BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0676100 Os04g0676100|Os04g0676100
(180 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0676100 Similar to Thioredoxin X, chloroplast precursor 283 4e-77
Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M) 87 6e-18
Os12g0188700 Similar to Thioredoxin (TRX) 85 2e-17
Os02g0639900 Similar to Thioredoxin M-type, chloroplast pre... 85 3e-17
Os04g0430800 Thioredoxin family protein 82 3e-16
Os01g0963400 Thioredoxin family protein 80 9e-16
U92541 66 1e-11
Os07g0186000 Similar to Thioredoxin h isoform 1 66 1e-11
Os08g0378900 Similar to Thioredoxin protein 64 5e-11
Os09g0451500 Thioredoxin domain 2 containing protein 64 8e-11
>Os04g0676100 Similar to Thioredoxin X, chloroplast precursor
Length = 180
Score = 283 bits (724), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/180 (81%), Positives = 147/180 (81%)
Query: 1 MASAPSTTASGLAPPPFSSXXXXXXXXXXXXXXXXXXXSVGSFXXXXXXXXXXXXXXIAS 60
MASAPSTTASGLAPPPFSS SVGSF IAS
Sbjct: 1 MASAPSTTASGLAPPPFSSARGARLLPGALLRLPPPPASVGSFRVVGPAAAPPGGRRIAS 60
Query: 61 ARVRCGAAVRFIGQSEFEAEVLQSDLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKI 120
ARVRCGAAVRFIGQSEFEAEVLQSDLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKI
Sbjct: 61 ARVRCGAAVRFIGQSEFEAEVLQSDLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKI 120
Query: 121 VKIDHDANPQLIEEYKVYGLPSLILFKDGKEVPGSRREGAITKAKFKEYLEPLLSTSTVA 180
VKIDHDANPQLIEEYKVYGLPSLILFKDGKEVPGSRREGAITKAKFKEYLEPLLSTSTVA
Sbjct: 121 VKIDHDANPQLIEEYKVYGLPSLILFKDGKEVPGSRREGAITKAKFKEYLEPLLSTSTVA 180
>Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M)
Length = 180
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 60/80 (75%)
Query: 72 IGQSEFEAEVLQSDLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVKIDHDANPQL 131
+ +S +++ V++S+LPVLV + A WCGPC++I PVV ++EYEG+LK K++ D NP +
Sbjct: 78 VTKSTWQSLVMESELPVLVGYWATWCGPCKMIDPVVGKLSKEYEGKLKCYKLNTDENPDI 137
Query: 132 IEEYKVYGLPSLILFKDGKE 151
+Y V +P++++FK+G++
Sbjct: 138 ASQYGVRSIPTMMIFKNGEK 157
>Os12g0188700 Similar to Thioredoxin (TRX)
Length = 172
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 56/76 (73%)
Query: 76 EFEAEVLQSDLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVKIDHDANPQLIEEY 135
+++ VL S+ PVLV+F A WCGPCR+IAPV+D A+EY G++K K++ D +P + Y
Sbjct: 74 NWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNY 133
Query: 136 KVYGLPSLILFKDGKE 151
+ +P++++FK+G++
Sbjct: 134 GIRSIPTVLMFKNGEK 149
>Os02g0639900 Similar to Thioredoxin M-type, chloroplast precursor (TRX-M)
Length = 173
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 60/80 (75%)
Query: 72 IGQSEFEAEVLQSDLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVKIDHDANPQL 131
+ +S +++ V++S+LPVLV+F A WCGPC++I PV+ ++EYEG+L K++ D NP +
Sbjct: 71 VTKSTWQSLVVESELPVLVEFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDI 130
Query: 132 IEEYKVYGLPSLILFKDGKE 151
++ + +P++++FK+G++
Sbjct: 131 ATQFGIRSIPTMMIFKNGEK 150
>Os04g0430800 Thioredoxin family protein
Length = 266
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 85 DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVKIDHDANPQLIEEYKVYGLPSLI 144
D+PVL++F A WCGPCR++ +VD A+EY GR+K K+D D PQ+ Y + +P+++
Sbjct: 33 DIPVLIEFWASWCGPCRMVHRIVDEIAQEYAGRIKCYKLDTDDYPQVATSYSIERIPTVL 92
Query: 145 LFKDGKE 151
LFKDG++
Sbjct: 93 LFKDGEK 99
>Os01g0963400 Thioredoxin family protein
Length = 122
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 59 ASARVRCGAAVRFIGQ----SEFEAEVLQSDLPVLVDFVADWCGPCRLIAPVVDWAAEEY 114
A+A R GA +R + S F+ + +S+ PVLVDF A WCGPC+ + P++ +E+
Sbjct: 1 AAAPSRRGATLRVQAKKQTFSSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKL 60
Query: 115 EGRLKIVKIDHDANPQLIEEYKVYGLPSLILFKDGKEVPGSRREGAITKAKFKEYLEPLL 174
++++VKID + + Y++ LP+ I+FK+GK P R EGA+ + + +E L
Sbjct: 61 GDKIQVVKIDTEKYTSIANRYQIEALPTFIIFKNGK--PCHRFEGALPANQLIQQIESAL 118
Query: 175 STS 177
+
Sbjct: 119 EVA 121
>U92541
Length = 122
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 66 GAAVRFIGQSEFEAEVLQSDLP---VLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVK 122
G + + EF+A++ ++ V++DF A WCGPCR IAPV A+++ G + +K
Sbjct: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLK 64
Query: 123 IDHDANPQLIEEYKVYGLPSLILFKDGKE---VPGSRRE 158
+D D ++ E+Y V +P+ + KDG E V G+R++
Sbjct: 65 VDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 103
>Os07g0186000 Similar to Thioredoxin h isoform 1
Length = 122
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 66 GAAVRFIGQSEFEAEVLQSDLP---VLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVK 122
G + + EF+A++ ++ V++DF A WCGPCR IAPV A+++ G + +K
Sbjct: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLK 64
Query: 123 IDHDANPQLIEEYKVYGLPSLILFKDGKE---VPGSRRE 158
+D D ++ E+Y V +P+ + KDG E V G+R++
Sbjct: 65 VDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 103
>Os08g0378900 Similar to Thioredoxin protein
Length = 189
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 83 QSDLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVKIDHDANPQLIEEYKVYGLPS 142
+ +P++VDF A WCGPC L+A ++ A EYE VK+D D +L + +V GLP+
Sbjct: 98 ERKVPLIVDFYATWCGPCVLMAQDIEMLAVEYENNALFVKVDTDDEYELARDMQVRGLPT 157
Query: 143 LILFKDGKEVPGSRREGAI 161
L F + R EG I
Sbjct: 158 LYFFSPDQSKDALRTEGLI 176
>Os09g0451500 Thioredoxin domain 2 containing protein
Length = 441
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%)
Query: 60 SARVRCGAAVRFIGQSEFEAEVLQSDLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLK 119
SA G+ V + F+++VL S+ VLV+F A WCG C+ + P+ + AA +G
Sbjct: 22 SALYSAGSPVLQFNPNNFKSKVLNSNGVVLVEFFAPWCGHCQQLTPIWEKAAGVLKGVAT 81
Query: 120 IVKIDHDANPQLIEEYKVYGLPSLILFKDGK 150
+ +D DA+ +L +EY + G P++ +F GK
Sbjct: 82 VAALDADAHKELAQEYGIRGFPTIKVFVPGK 112
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,218,866
Number of extensions: 183011
Number of successful extensions: 506
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 10
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)