Os12g0188700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin (TRX).
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Os12g0188700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thioredoxin (TRX).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.69 | 0.307 | 13.8 | -0.768 | 0.112 | 0.296 | 0.412 | 0.772 | -0.632 | 6.61 | 1001 | 10321 | -- | -- |
| 42.69 | 0.304 | 13.8 | -0.825 | 0.12 | 0.444 | 0.389 | -- | -0.642 | 6.64 | 998.8 | 10300 | -- | -- |
| 42.97 | 0.305 | 13.8 | -0.771 | 0.112 | 0.333 | -- | 0.578 | -0.634 | 7.17 | 998.8 | 10199 | -- | -- |
| 43.05 | 0.306 | 13.8 | -0.804 | 0.114 | 0.453 | -- | -- | -0.63 | 7.07 | 998.3 | 10181 | -- | -- |
| 43.64 | 0.308 | 13.8 | -0.769 | -- | 0.319 | -- | 0.65 | -0.633 | -- | 998.8 | 10198 | -- | -- |
| 46.68 | 0.32 | 13.8 | -0.734 | 0.109 | -- | 0.395 | -- | -0.665 | 6.74 | -- | -- | -- | -- |
| 47.06 | 0.321 | 13.9 | -0.727 | 0.111 | -- | -- | -- | -0.666 | 7.28 | -- | -- | -- | -- |
| 43.4 | 0.307 | 13.8 | -0.808 | -- | 0.398 | -- | -- | -0.632 | -- | 997.2 | 11346 | -- | -- |
| 59.24 | 0.358 | 13.8 | -- | 0.0977 | 0.308 | -- | -- | -0.549 | 6.69 | 998.1 | 7681 | -- | -- |
| 47.71 | 0.323 | 13.9 | -0.725 | -- | -- | -- | -- | -0.664 | -- | -- | -- | -- | -- |
| 60.99 | 0.365 | 13.8 | -- | 0.104 | -- | -- | -- | -0.585 | 7.73 | -- | -- | -- | -- |
| 59.57 | 0.359 | 13.8 | -- | -- | 0.409 | -- | -- | -0.562 | -- | 997.7 | 4950 | -- | -- |
| 61.58 | 0.366 | 13.8 | -- | -- | -- | -- | -- | -0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.50 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 41.97 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 3 | 41.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 10 | 42.22 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 11 | 42.28 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 14 | 42.35 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 18 | 42.36 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 31 | 42.46 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 32 | 42.46 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 44 | 42.46 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 55 | 42.47 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 85 | 42.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 99 | 42.50 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 101 | 42.50 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 283 | 42.63 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 288 | 42.64 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 306 | 42.66 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 314 | 42.67 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 318 | 42.67 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 332 | 42.68 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 339 | 42.68 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 356 | 42.69 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 408 | 42.71 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 410 | 42.71 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 7 |
| 496 | 42.74 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 518 | 42.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 519 | 42.74 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 522 | 42.75 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 552 | 42.76 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 578 | 42.77 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 613 | 42.77 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 684 | 42.80 | atmosphere | 995.0 | 14400 | > th | dose independent | no | NA | NA |
| 700 | 42.80 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 712 | 42.80 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 719 | 42.80 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 811 | 42.84 | atmosphere | 995.0 | 14400 | < th | dose independent | no | NA | NA |
| 813 | 42.84 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 858 | 42.84 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 887 | 42.86 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 915 | 42.89 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 919 | 42.90 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 920 | 42.90 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 927 | 42.90 | wind | 1.0 | 720 | < th | dose independent | rect. | 7 | 18 |
| 931 | 42.91 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 949 | 42.92 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 11 | 1 |