Os01g0963400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin family protein.
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Os01g0963400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.13 | 0.245 | 12.8 | -0.631 | 0.576 | -1.06 | -0.486 | -2.96 | -0.531 | 20.5 | 0.8902 | 1385 | -- | -- |
| 31.49 | 0.261 | 12.9 | -0.874 | 0.595 | -0.454 | -0.185 | -- | -0.535 | 20.9 | 2.278 | 1335 | -- | -- |
| 27.78 | 0.245 | 12.8 | -0.642 | 0.577 | -1.01 | -- | -2.73 | -0.53 | 20.6 | 0.8274 | 1386 | -- | -- |
| 31.2 | 0.26 | 12.9 | -0.912 | 0.604 | -0.521 | -- | -- | -0.584 | 20.8 | 2.35 | 1347 | -- | -- |
| 34.25 | 0.273 | 12.8 | -0.808 | -- | -1.37 | -- | -2.23 | -0.565 | -- | 1.071 | 1231 | -- | -- |
| 34.07 | 0.274 | 12.9 | -0.814 | 0.704 | -- | 0.0511 | -- | -0.522 | 21.2 | -- | -- | -- | -- |
| 34.08 | 0.273 | 12.9 | -0.815 | 0.704 | -- | -- | -- | -0.522 | 21.2 | -- | -- | -- | -- |
| 32.71 | 0.266 | 12.9 | -0.957 | -- | -1.09 | -- | -- | -0.606 | -- | 2.107 | 1113 | -- | -- |
| 50.56 | 0.331 | 12.8 | -- | 0.673 | -0.221 | -- | -- | -0.476 | 21 | 20 | 2761 | -- | -- |
| 62.74 | 0.37 | 12.8 | -0.813 | -- | -- | -- | -- | -0.525 | -- | -- | -- | -- | -- |
| 51.6 | 0.336 | 12.8 | -- | 0.704 | -- | -- | -- | -0.431 | 21.1 | -- | -- | -- | -- |
| 55.24 | 0.346 | 12.8 | -- | -- | -0.972 | -- | -- | -0.512 | -- | 8.512 | 1084 | -- | -- |
| 80.19 | 0.418 | 12.8 | -- | -- | -- | -- | -- | -0.435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.44 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 2 | 27.46 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 7 | 27.49 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 12 | 27.56 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 143 | 28.31 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 17 |
| 145 | 28.31 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 146 | 28.33 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 174 | 28.40 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 179 | 28.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 199 | 28.43 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 217 | 28.44 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 221 | 28.44 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 231 | 28.45 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 262 | 28.53 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 271 | 28.62 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 273 | 28.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 278 | 28.64 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 291 | 28.67 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 15 |
| 292 | 28.67 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 20 |
| 294 | 28.67 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 15 |
| 296 | 28.67 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 301 | 28.73 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 318 | 28.76 | radiation | 1.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 341 | 28.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 350 | 28.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 352 | 28.90 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 356 | 28.91 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 371 | 28.92 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 14 |
| 386 | 28.96 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 390 | 28.96 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 407 | 28.99 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 431 | 29.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 442 | 29.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 454 | 29.02 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 17 |
| 480 | 29.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 488 | 29.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 490 | 29.07 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 495 | 29.07 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 6 | 22 |
| 498 | 29.07 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 6 | 22 |
| 521 | 29.10 | radiation | 1.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 546 | 29.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 570 | 29.12 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 650 | 29.16 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 652 | 29.16 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 655 | 29.17 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 665 | 29.17 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 669 | 29.17 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 678 | 29.17 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 681 | 29.18 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 688 | 29.18 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 700 | 29.18 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 707 | 29.19 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 19 |
| 709 | 29.19 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 752 | 29.23 | humidity | 80.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 780 | 29.23 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 791 | 29.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 805 | 29.25 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 809 | 29.25 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 831 | 29.27 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 853 | 29.28 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 889 | 29.32 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 892 | 29.33 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 965 | 29.33 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 975 | 29.34 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 23 |