BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0963400 Os01g0963400|AK062343
(122 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0963400 Thioredoxin family protein 253 2e-68
Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M) 90 3e-19
Os02g0639900 Similar to Thioredoxin M-type, chloroplast pre... 85 1e-17
Os12g0188700 Similar to Thioredoxin (TRX) 84 2e-17
Os04g0430800 Thioredoxin family protein 81 1e-16
Os04g0676100 Similar to Thioredoxin X, chloroplast precursor 80 3e-16
Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5) 73 5e-14
Os07g0190800 Similar to Thioredoxin h 72 7e-14
U92541 70 4e-13
Os07g0186000 Similar to Thioredoxin h isoform 1 70 4e-13
AK110198 69 6e-13
Os01g0339900 Thioredoxin domain 2 containing protein 66 4e-12
Os05g0508500 Similar to Thioredoxin H 66 5e-12
Os08g0378900 Similar to Thioredoxin protein 66 6e-12
Os01g0913000 Similar to Thioredoxin F-type 2, chloroplast p... 65 1e-11
Os05g0156300 Similar to Protein disulfide isomerase 65 2e-11
>Os01g0963400 Thioredoxin family protein
Length = 122
Score = 253 bits (645), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 AAAPSRRGATLRVQAKKQTFSSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKL 60
AAAPSRRGATLRVQAKKQTFSSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKL
Sbjct: 1 AAAPSRRGATLRVQAKKQTFSSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKL 60
Query: 61 GDKIQVVKIDTEKYTSIANRYQIEALPTFIIFKNGKPCHRFEGALPANQLIQQIESALEV 120
GDKIQVVKIDTEKYTSIANRYQIEALPTFIIFKNGKPCHRFEGALPANQLIQQIESALEV
Sbjct: 61 GDKIQVVKIDTEKYTSIANRYQIEALPTFIIFKNGKPCHRFEGALPANQLIQQIESALEV 120
Query: 121 AK 122
AK
Sbjct: 121 AK 122
>Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M)
Length = 180
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 74/113 (65%)
Query: 7 RGATLRVQAKKQTFSSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQV 66
+G +Q + T S++ L+ +SE PVLV ++ATWCGPC+ + P++ ++S++ K++
Sbjct: 67 QGQDTSIQVPEVTKSTWQSLVMESELPVLVGYWATWCGPCKMIDPVVGKLSKEYEGKLKC 126
Query: 67 VKIDTEKYTSIANRYQIEALPTFIIFKNGKPCHRFEGALPANQLIQQIESALE 119
K++T++ IA++Y + ++PT +IFKNG+ GA+P + LI IE +E
Sbjct: 127 YKLNTDENPDIASQYGVRSIPTMMIFKNGEKKDAVIGAVPESTLIASIEKFVE 179
>Os02g0639900 Similar to Thioredoxin M-type, chloroplast precursor (TRX-M)
Length = 173
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 69/109 (63%)
Query: 7 RGATLRVQAKKQTFSSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQV 66
+G Q T S++ L+ +SE PVLV+F+A+WCGPC+ + P++ ++S++ K+
Sbjct: 60 QGQETSFQVPDVTKSTWQSLVVESELPVLVEFWASWCGPCKMIDPVIGKLSKEYEGKLNC 119
Query: 67 VKIDTEKYTSIANRYQIEALPTFIIFKNGKPCHRFEGALPANQLIQQIE 115
K++T++ IA ++ I ++PT +IFKNG+ GA+P + L+ I+
Sbjct: 120 YKLNTDENPDIATQFGIRSIPTMMIFKNGEKKDAVIGAVPESTLVSSID 168
>Os12g0188700 Similar to Thioredoxin (TRX)
Length = 172
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 61/94 (64%)
Query: 22 SFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSIANRY 81
++D ++ SE PVLV+F+A WCGPC+ + P++ E++++ KI+ K++T+ +IA Y
Sbjct: 74 NWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNY 133
Query: 82 QIEALPTFIIFKNGKPCHRFEGALPANQLIQQIE 115
I ++PT ++FKNG+ GA+P L I+
Sbjct: 134 GIRSIPTVLMFKNGEKKESVIGAVPKTTLATIID 167
>Os04g0430800 Thioredoxin family protein
Length = 266
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 30 SEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSIANRYQIEALPTF 89
+ PVL++F+A+WCGPC+ + I+ E++++ +I+ K+DT+ Y +A Y IE +PT
Sbjct: 32 GDIPVLIEFWASWCGPCRMVHRIVDEIAQEYAGRIKCYKLDTDDYPQVATSYSIERIPTV 91
Query: 90 IIFKNGKPCHRFEGALPANQLIQQI 114
++FK+G+ H G LP I I
Sbjct: 92 LLFKDGEKTHSITGTLPKAVYISGI 116
>Os04g0676100 Similar to Thioredoxin X, chloroplast precursor
Length = 180
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 1 AAAP--SRRGATLRVQAKKQTF----SSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQ 54
AAAP RR A+ RV+ S F+ + +S+ PVLVDF A WCGPC+ + P++
Sbjct: 49 AAAPPGGRRIASARVRCGAAVRFIGQSEFEAEVLQSDLPVLVDFVADWCGPCRLIAPVVD 108
Query: 55 EVSEKLGDKIQVVKIDTEKYTSIANRYQIEALPTFIIFKNGK--PCHRFEGALPANQLIQ 112
+E+ ++++VKID + + Y++ LP+ I+FK+GK P R EGA+ + +
Sbjct: 109 WAAEEYEGRLKIVKIDHDANPQLIEEYKVYGLPSLILFKDGKEVPGSRREGAITKAKFKE 168
Query: 113 QIESALEVA 121
+E L +
Sbjct: 169 YLEPLLSTS 177
>Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5)
Length = 134
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
Query: 8 GATLRVQAKKQTFSSFDELL----EKSEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDK 63
G RV A T +++DE K +++DF ATWCGPC+++ P ++++ + D
Sbjct: 18 GGDSRVVAVHST-ATWDEQWGAHKSNPNKLIVIDFSATWCGPCRFIEPAFKDMAGRFADA 76
Query: 64 IQVVKIDTEKYTSIANRYQIEALPTFIIFKNGKPCHRFEGA 104
+ KID ++ + +A ++++EA+PTF++ K GK R GA
Sbjct: 77 V-FFKIDVDELSEVARQWKVEAMPTFVLIKGGKEVSRVVGA 116
>Os07g0190800 Similar to Thioredoxin h
Length = 138
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 21 SSFDELLE---KSEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSI 77
+ +DEL + + K V++DF A+WCGPC+ M P+ +E++ + D + +K+D ++ +
Sbjct: 30 AKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTD-VAFLKVDVDELAEV 88
Query: 78 ANRYQIEALPTFIIFKNGKPCHRFEGA 104
A +++EA+PTF++ + G+ R GA
Sbjct: 89 ARTWRVEAMPTFVLARGGEEVGRIVGA 115
>U92541
Length = 122
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 23 FDELLEKSE---KPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSIAN 79
FD + K++ K V++DF A+WCGPC+++ P+ E ++K + +K+D ++ +A
Sbjct: 17 FDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAE 75
Query: 80 RYQIEALPTFIIFKNGKPCHRFEGA 104
+Y +EA+PTF+ K+G + GA
Sbjct: 76 KYNVEAMPTFLFIKDGAEADKVVGA 100
>Os07g0186000 Similar to Thioredoxin h isoform 1
Length = 122
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 23 FDELLEKSE---KPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSIAN 79
FD + K++ K V++DF A+WCGPC+++ P+ E ++K + +K+D ++ +A
Sbjct: 17 FDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAE 75
Query: 80 RYQIEALPTFIIFKNGKPCHRFEGA 104
+Y +EA+PTF+ K+G + GA
Sbjct: 76 KYNVEAMPTFLFIKDGAEADKVVGA 100
>AK110198
Length = 961
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 21 SSFD-ELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSIAN 79
+ FD EL K V+VDF+A WCGPC+ + P+ Q++ + + + +K+D ++ ++A
Sbjct: 9 TEFDAELQAAGSKLVVVDFHALWCGPCKVIAPVFQQLVTRHPN-VTFLKVDVDRVQAVAQ 67
Query: 80 RYQIEALPTFIIFKNGKPCHRFEGALP 106
RY++ A+PTF+ KN +GA P
Sbjct: 68 RYRVRAMPTFLFLKNKNVVDTLQGADP 94
>Os01g0339900 Thioredoxin domain 2 containing protein
Length = 371
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 21 SSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSE--KLGDKIQVVKIDTEKYTSIA 78
+FD ++ K +LV+FYA WCG C+++ PI ++++ KL D + + +D +K+ +A
Sbjct: 161 DNFDSIVLDENKDILVEFYAPWCGHCKHLAPIYEKLASVYKLDDGVVIANLDADKHKDLA 220
Query: 79 NRYQIEALPTFIIF-KNGKPCHRFEGALPANQLIQQI 114
+Y + PT F K K ++G + ++ I
Sbjct: 221 EKYGVSGYPTLKFFPKGNKAGEDYDGGRELDDFVKFI 257
>Os05g0508500 Similar to Thioredoxin H
Length = 121
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 30 SEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSIANRYQIEALPTF 89
++K V++DF A+WCGPC+ + P+ ++++K + + +K+D ++ IA ++ +EA+PTF
Sbjct: 33 AKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAV-FLKVDVDELKPIAEQFSVEAMPTF 91
Query: 90 IIFKNGKPCHRFEGALPANQLIQQIE 115
+ K G R GA+ ++L ++E
Sbjct: 92 LFMKEGDVKDRVVGAMK-DELASKLE 116
>Os08g0378900 Similar to Thioredoxin protein
Length = 189
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 16 KKQTFSSFDELLEKSEK-PVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKY 74
KK T +EL+ K P++VDFYATWCGPC M ++ ++ + + VK+DT+
Sbjct: 84 KKVTAKELEELVRGERKVPLIVDFYATWCGPCVLMAQDIEMLAVEYENNALFVKVDTDDE 143
Query: 75 TSIANRYQIEALPTFIIF--KNGKPCHRFEGALPANQLIQQIESAL 118
+A Q+ LPT F K R EG +P + + I++ L
Sbjct: 144 YELARDMQVRGLPTLYFFSPDQSKDALRTEGLIPIDMIRNIIDNEL 189
>Os01g0913000 Similar to Thioredoxin F-type 2, chloroplast precursor (TRX-F2)
Length = 187
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 32 KPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKID-TEKYTSIANRYQIEALPTFI 90
K V++D Y WCGPC+ M P QE+SEK D + +K+D + S+A I+ +PTF
Sbjct: 100 KVVVLDMYTQWCGPCKVMAPKFQEMSEKDQD-VVFLKLDCNQDNKSLAKELGIKVVPTFK 158
Query: 91 IFKNGKPCHRFEGALPANQLIQQIES 116
I K+GK GA ++LIQ IE+
Sbjct: 159 ILKDGKVVKEVTGA-KLDELIQAIET 183
>Os05g0156300 Similar to Protein disulfide isomerase
Length = 366
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 19 TFSSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSE--KLGDKIQVVKIDTEKYTS 76
T +FD ++ K VLV+FYA WCG C+++ PI ++++ K + + + +D +K+T+
Sbjct: 154 TPETFDSVVLDETKDVLVEFYAPWCGHCKHLAPIYEKLASVYKQDEGVVIANLDADKHTA 213
Query: 77 IANRYQIEALPTFIIF-KNGKPCHRFEGALPANQLIQQI 114
+A +Y + PT F K K ++G + ++ I
Sbjct: 214 LAEKYGVSGFPTLKFFPKGNKAGEDYDGGRELDDFVKFI 252
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,611,238
Number of extensions: 119884
Number of successful extensions: 464
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 16
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)