Os05g0508500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin H.
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Os05g0508500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thioredoxin H.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.5 | 0.213 | 14.9 | -0.811 | 0.694 | 1.25 | 0.308 | 3.11 | -0.254 | 18.9 | 20.43 | 270 | -- | -- |
| 22.46 | 0.222 | 14.8 | -0.723 | 0.702 | 0.396 | 0.0455 | -- | -0.208 | 18.5 | 35.19 | 199 | -- | -- |
| 20.72 | 0.212 | 14.9 | -0.814 | 0.695 | 1.21 | -- | 2.98 | -0.255 | 18.9 | 20.44 | 258 | -- | -- |
| 22.46 | 0.222 | 14.8 | -0.724 | 0.703 | 0.398 | -- | -- | -0.208 | 18.5 | 82.29 | 91 | -- | -- |
| 45.33 | 0.315 | 14.8 | -0.842 | -- | 0.525 | -- | 1.44 | -0.273 | -- | 20.44 | 258 | -- | -- |
| 23.97 | 0.23 | 14.8 | -0.799 | 0.658 | -- | 0.0837 | -- | -0.264 | 19.1 | -- | -- | -- | -- |
| 23.98 | 0.229 | 14.8 | -0.801 | 0.659 | -- | -- | -- | -0.263 | 19.1 | -- | -- | -- | -- |
| 45.36 | 0.314 | 14.8 | -0.702 | -- | 0.269 | -- | -- | -0.22 | -- | 83.01 | 2842 | -- | -- |
| 34.9 | 0.275 | 14.8 | -- | 0.83 | 0.723 | -- | -- | -0.09 | 18.4 | 90.51 | 208 | -- | -- |
| 46.85 | 0.32 | 14.8 | -0.814 | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
| 40.88 | 0.299 | 14.8 | -- | 0.667 | -- | -- | -- | -0.174 | 19 | -- | -- | -- | -- |
| 49.35 | 0.327 | 14.8 | -- | -- | 0.622 | -- | -- | 0.000997 | -- | 82.33 | 47520 | -- | -- |
| 64.31 | 0.374 | 14.8 | -- | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.69 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 13 |
| 5 | 19.71 | temperature | 20 | 720 | < th | dose independent | sin | 18 | NA |
| 52 | 20.05 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 53 | 20.05 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 63 | 20.07 | temperature | 20 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 65 | 20.07 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 105 | 20.25 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 2 |
| 117 | 20.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 123 | 20.39 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 126 | 20.41 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 134 | 20.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 138 | 20.44 | temperature | 20 | 270 | < th | dose dependent | sin | 12 | NA |
| 140 | 20.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 148 | 20.48 | temperature | 20 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 151 | 20.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 8 |
| 152 | 20.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 203 | 20.56 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 23 |
| 204 | 20.56 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 234 | 20.60 | temperature | 20 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 259 | 20.64 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 264 | 20.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 333 | 20.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 344 | 20.72 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 364 | 20.73 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 16 |
| 386 | 20.75 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 402 | 20.76 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 419 | 20.77 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 447 | 20.78 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 18 |
| 462 | 20.78 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 493 | 20.79 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 11 |
| 500 | 20.80 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 553 | 20.82 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 589 | 20.84 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 591 | 20.84 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 623 | 20.85 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 630 | 20.86 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 643 | 20.87 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 652 | 20.87 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 654 | 20.87 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 675 | 20.88 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 718 | 20.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 780 | 20.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 801 | 20.95 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 806 | 20.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 830 | 20.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 863 | 20.98 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 885 | 21.00 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 898 | 21.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 900 | 21.01 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 901 | 21.01 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 925 | 21.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 928 | 21.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 13 |
| 937 | 21.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 955 | 21.03 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 980 | 21.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 17 |