BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0508500 Os05g0508500|AK106758
(121 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0508500 Similar to Thioredoxin H 228 8e-61
U92541 143 2e-35
Os07g0186000 Similar to Thioredoxin h isoform 1 143 2e-35
Os09g0401200 Similar to HSP associated protein like 115 5e-27
Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5) 114 1e-26
Os07g0190800 Similar to Thioredoxin h 108 7e-25
Os05g0169000 Similar to Thioredoxin-like protein 105 1e-23
Os01g0168200 Similar to Thioredoxin-like protein 103 2e-23
AK110198 102 6e-23
Os12g0281300 Similar to Pi-ta protein 95 1e-20
Os05g0480200 Thioredoxin domain 2 containing protein 92 8e-20
Os01g0913000 Similar to Thioredoxin F-type 2, chloroplast p... 75 2e-14
Os04g0629500 Similar to Thioredoxin h 70 3e-13
Os12g0188700 Similar to Thioredoxin (TRX) 70 4e-13
Os02g0639900 Similar to Thioredoxin M-type, chloroplast pre... 70 5e-13
Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M) 66 5e-12
Os01g0963400 Thioredoxin family protein 66 5e-12
Os05g0200100 Thioredoxin domain 2 containing protein 64 2e-11
>Os05g0508500 Similar to Thioredoxin H
Length = 121
Score = 228 bits (581), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 112/121 (92%), Positives = 112/121 (92%)
Query: 1 MXXXXXXXXXEGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLA 60
M EGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLA
Sbjct: 1 MAAASAAAQAEGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLA 60
Query: 61 KKHTNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELHMA 120
KKHTNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELHMA
Sbjct: 61 KKHTNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELHMA 120
Query: 121 M 121
M
Sbjct: 121 M 121
>U92541
Length = 122
Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 86/110 (78%)
Query: 11 EGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLK 70
EG VIA H+ DE+ Q+ +A A K+V+IDFTASWCGPCR IAPVFA+ AKK AVFLK
Sbjct: 5 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLK 64
Query: 71 VDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELHMA 120
VDVDELK +AE+++VEAMPTFLF+K+G D+VVGA KD+L + + H+
Sbjct: 65 VDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114
>Os07g0186000 Similar to Thioredoxin h isoform 1
Length = 122
Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 86/110 (78%)
Query: 11 EGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLK 70
EG VIA H+ DE+ Q+ +A A K+V+IDFTASWCGPCR IAPVFA+ AKK AVFLK
Sbjct: 5 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLK 64
Query: 71 VDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELHMA 120
VDVDELK +AE+++VEAMPTFLF+K+G D+VVGA KD+L + + H+
Sbjct: 65 VDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114
>Os09g0401200 Similar to HSP associated protein like
Length = 317
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 76/108 (70%)
Query: 11 EGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLK 70
+G VIAIHS E +++ A+S +LVV+ FTA+WCGPCR I PV LA+KH N VFLK
Sbjct: 207 DGDVIAIHSSSELDTKLKAASSLSRLVVLYFTAAWCGPCRFIGPVCKSLAEKHRNVVFLK 266
Query: 71 VDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELH 118
VD+DEL +A +++V ++P+F F++ G D+VVGA K+ L K+ H
Sbjct: 267 VDIDELNSVAYRWNVSSVPSFFFVRNGKEIDKVVGADKNGLERKVAQH 314
>Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5)
Length = 134
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 11 EGTVIAIHSLDEWTIQI-EEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFL 69
+ V+A+HS W Q ++ KL+VIDF+A+WCGPCR I P F D+A + +AVF
Sbjct: 20 DSRVVAVHSTATWDEQWGAHKSNPNKLIVIDFSATWCGPCRFIEPAFKDMAGRFADAVFF 79
Query: 70 KVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELHMA 120
K+DVDEL +A Q+ VEAMPTF+ +K G RVVGA KDEL K+ + ++
Sbjct: 80 KIDVDELSEVARQWKVEAMPTFVLIKGGKEVSRVVGAKKDELERKVNMFIS 130
>Os07g0190800 Similar to Thioredoxin h
Length = 138
Score = 108 bits (271), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 70/101 (69%)
Query: 11 EGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLK 70
E V+A+HS +W + + KLVVIDF+ASWCGPC+++ PVF ++A + T+ FLK
Sbjct: 20 ESAVVAVHSKAKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTDVAFLK 79
Query: 71 VDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDEL 111
VDVDEL +A + VEAMPTF+ + G+ R+VGA KDEL
Sbjct: 80 VDVDELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKDEL 120
>Os05g0169000 Similar to Thioredoxin-like protein
Length = 132
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 71/105 (67%)
Query: 12 GTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKV 71
G V I S ++W +IEEAN K+VV +F+ASWCGPCR+IAP++A+++K + +FL +
Sbjct: 22 GNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTI 81
Query: 72 DVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLE 116
DVD+L + + + A PTF F+K D++VGA K EL K++
Sbjct: 82 DVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKVQ 126
>Os01g0168200 Similar to Thioredoxin-like protein
Length = 131
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 70/104 (67%)
Query: 12 GTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKV 71
G V I + + W +I EAN K+V+ +F+A+WCGPCR+IAPV+A++++ + +FL +
Sbjct: 21 GNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFMFLTI 80
Query: 72 DVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKL 115
DVDEL + + + A PTF F+K G+ D++VGA K EL K+
Sbjct: 81 DVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELEKKV 124
>AK110198
Length = 961
Score = 102 bits (254), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Query: 19 SLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKVDVDELKP 78
S E+ +++ A S KLVV+DF A WCGPC++IAPVF L +H N FLKVDVD ++
Sbjct: 7 SATEFDAELQAAGS--KLVVVDFHALWCGPCKVIAPVFQQLVTRHPNVTFLKVDVDRVQA 64
Query: 79 IAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELH 118
+A+++ V AMPTFLF+K +V D + GA + L + ++ H
Sbjct: 65 VAQRYRVRAMPTFLFLKNKNVVDTLQGADPNRLTALVKQH 104
>Os12g0281300 Similar to Pi-ta protein
Length = 1033
Score = 94.7 bits (234), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/113 (41%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 11 EGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLK 70
EGTVI H+++++ + + +A + KLVVI FT S C R IAP F + AK+ AVF+K
Sbjct: 915 EGTVIVPHTMEQFALHMSQAKQSHKLVVIQFTTSRCPASRYIAPAFTEYAKEFAGAVFIK 974
Query: 71 VDV--DELKPIAEQFSVEAM-PTFLFMKEGDVKDRVVGAMKDELASKLELHMA 120
V+V DEL+ + + + +E + PTF F+K+G+ D++ GA K+ L +K+ H A
Sbjct: 975 VNVDSDELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGANKELLRAKIRRHTA 1027
>Os05g0480200 Thioredoxin domain 2 containing protein
Length = 135
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%)
Query: 12 GTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKV 71
G V + W +EE K VV+ F+A WC PCR AP+FA+L+ K+ + VF+ V
Sbjct: 20 GNVTLVTDQKNWDNTMEEVAEHGKTVVLKFSAIWCTPCRNAAPLFAELSLKYPDIVFVSV 79
Query: 72 DVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLE 116
DVDE+ + Q+ V A PTF+FMK + D++VG ++L K E
Sbjct: 80 DVDEMPELVTQYDVRATPTFIFMKNNEEIDKLVGGNHEDLQEKFE 124
>Os01g0913000 Similar to Thioredoxin F-type 2, chloroplast precursor (TRX-F2)
Length = 187
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 31 NSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKVDVDE-LKPIAEQFSVEAMP 89
++ K+VV+D WCGPC+++AP F ++++K + VFLK+D ++ K +A++ ++ +P
Sbjct: 96 SAGPKVVVLDMYTQWCGPCKVMAPKFQEMSEKDQDVVFLKLDCNQDNKSLAKELGIKVVP 155
Query: 90 TFLFMKEGDVKDRVVGAMKDELASKLE 116
TF +K+G V V GA DEL +E
Sbjct: 156 TFKILKDGKVVKEVTGAKLDELIQAIE 182
>Os04g0629500 Similar to Thioredoxin h
Length = 133
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 59/98 (60%)
Query: 14 VIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKVDV 73
V+ + + W + + +A++ VV F ASWC + F +LA+ H +FL VDV
Sbjct: 14 VVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYVDV 73
Query: 74 DELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDEL 111
D+++ ++ + V+AMPTF +K+ +V +++VGA DE+
Sbjct: 74 DDVQSVSSKLGVKAMPTFFLIKDKEVVNKIVGANPDEV 111
>Os12g0188700 Similar to Thioredoxin (TRX)
Length = 172
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 37 VVIDFTASWCGPCRIIAPVFADLAKKHTNAV-FLKVDVDELKPIAEQFSVEAMPTFLFMK 95
V+++F A WCGPCR+IAPV +LAK++ + KV+ D+ IA + + ++PT L K
Sbjct: 86 VLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFK 145
Query: 96 EGDVKDRVVGAM-KDELASKLELHMA 120
G+ K+ V+GA+ K LA+ ++ +++
Sbjct: 146 NGEKKESVIGAVPKTTLATIIDKYVS 171
>Os02g0639900 Similar to Thioredoxin M-type, chloroplast precursor (TRX-M)
Length = 173
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 37 VVIDFTASWCGPCRIIAPVFADLAKKHTNAV-FLKVDVDELKPIAEQFSVEAMPTFLFMK 95
V+++F ASWCGPC++I PV L+K++ + K++ DE IA QF + ++PT + K
Sbjct: 87 VLVEFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFK 146
Query: 96 EGDVKDRVVGAMKDE-LASKLELHMA 120
G+ KD V+GA+ + L S ++ ++
Sbjct: 147 NGEKKDAVIGAVPESTLVSSIDKYIG 172
>Os04g0530600 Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M)
Length = 180
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 37 VVIDFTASWCGPCRIIAPVFADLAKKHTNAV-FLKVDVDELKPIAEQFSVEAMPTFLFMK 95
V++ + A+WCGPC++I PV L+K++ + K++ DE IA Q+ V ++PT + K
Sbjct: 94 VLVGYWATWCGPCKMIDPVVGKLSKEYEGKLKCYKLNTDENPDIASQYGVRSIPTMMIFK 153
Query: 96 EGDVKDRVVGAMKD 109
G+ KD V+GA+ +
Sbjct: 154 NGEKKDAVIGAVPE 167
>Os01g0963400 Thioredoxin family protein
Length = 122
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 33 AKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAV-FLKVDVDELKPIAEQFSVEAMPTF 91
++K V++DF A+WCGPC+ + P+ ++++K + + +K+D ++ IA ++ +EA+PTF
Sbjct: 30 SEKPVLVDFYATWCGPCQYMVPILQEVSEKLGDKIQVVKIDTEKYTSIANRYQIEALPTF 89
Query: 92 LFMKEGDVKDRVVGAMK-DELASKLE 116
+ K G R GA+ ++L ++E
Sbjct: 90 IIFKNGKPCHRFEGALPANQLIQQIE 115
>Os05g0200100 Thioredoxin domain 2 containing protein
Length = 231
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 13 TVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKVD 72
+I IHS E+ + +A +LV+++F +WCG CR + P A ++ + +FLKV+
Sbjct: 95 NMIDIHSTQEFLDALRDAGD--RLVIVEFYGTWCGSCRALFPRLCRTAVENPDILFLKVN 152
Query: 73 VDELKPIAEQFSVEAMPTFLFMKEGD 98
DE KP+ ++ +V+ +P F F + D
Sbjct: 153 FDENKPMCKRLNVKVLPYFHFYRGAD 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,280,560
Number of extensions: 108045
Number of successful extensions: 263
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 19
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)