Os01g0168200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin-like protein.
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Os01g0168200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thioredoxin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.89 | 0.361 | 9.25 | 0.043 | 1.56 | 0.664 | 0.253 | -4.24 | 0.145 | 4.82 | 21.19 | 897 | -- | -- |
| 70.87 | 0.392 | 9.17 | 0.819 | 1.51 | 0.591 | 0.309 | -- | 0.291 | 4.54 | 11.79 | 10334 | -- | -- |
| 58.98 | 0.358 | 9.25 | 0.0599 | 1.59 | 0.674 | -- | -4.33 | 0.149 | 4.83 | 21.29 | 822 | -- | -- |
| 70.47 | 0.391 | 9.16 | 0.729 | 1.53 | 0.52 | -- | -- | 0.316 | 4.52 | 11.2 | 29163 | -- | -- |
| 173.42 | 0.617 | 9.1 | 1.35 | -- | -1.01 | -- | -0.555 | 0.681 | -- | 21.59 | 1174 | -- | -- |
| 74.95 | 0.406 | 9.12 | 1.19 | 1.53 | -- | 0.214 | -- | 0.507 | 4.5 | -- | -- | -- | -- |
| 75.07 | 0.406 | 9.12 | 1.19 | 1.53 | -- | -- | -- | 0.506 | 4.48 | -- | -- | -- | -- |
| 173.7 | 0.617 | 9.09 | 1.45 | -- | -1.04 | -- | -- | 0.708 | -- | 21.59 | 1174 | -- | -- |
| 73.84 | 0.4 | 9.22 | -- | 1.51 | 1.02 | -- | -- | 0.0735 | 4.53 | -1.417 | 44174 | -- | -- |
| 200.3 | 0.661 | 9.13 | 1.25 | -- | -- | -- | -- | 0.546 | -- | -- | -- | -- | -- |
| 112.38 | 0.496 | 9.15 | -- | 1.55 | -- | -- | -- | 0.373 | 4.46 | -- | -- | -- | -- |
| 196.52 | 0.653 | 9.23 | -- | -- | 1.09 | -- | -- | 0.0606 | -- | 10.5 | 29999 | -- | -- |
| 241.49 | 0.725 | 9.16 | -- | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 35 | 59.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 41 | 59.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 42 | 59.57 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 58 | 59.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 99 | 59.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 127 | 60.17 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 148 | 60.33 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 13 |
| 186 | 60.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 191 | 60.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 226 | 60.79 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 21 |
| 241 | 60.86 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 250 | 60.90 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 22 |
| 279 | 61.03 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 21 |
| 280 | 61.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 296 | 61.07 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 11 |
| 302 | 61.08 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 23 |
| 303 | 61.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 330 | 61.17 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 23 |
| 345 | 61.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 360 | 61.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 20 |
| 376 | 61.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 4 |
| 410 | 61.36 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 411 | 61.36 | radiation | 30 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 414 | 61.37 | temperature | 25 | 720 | < th | dose independent | rect. | 22 | 23 |
| 454 | 61.45 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 23 |
| 467 | 61.47 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 505 | 61.55 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 23 |
| 517 | 61.59 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 532 | 61.63 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 23 |
| 550 | 61.66 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 23 |
| 562 | 61.70 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 23 |
| 606 | 61.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 5 |
| 614 | 61.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 629 | 61.88 | radiation | 30 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 643 | 61.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 647 | 61.91 | radiation | 30 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 659 | 61.94 | radiation | 20 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 671 | 61.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 674 | 61.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 680 | 61.99 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 23 |
| 681 | 61.99 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 713 | 62.05 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 746 | 62.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 756 | 62.12 | temperature | 15 | 10 | > th | dose dependent | sin | 13 | NA |
| 773 | 62.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 789 | 62.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 791 | 62.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 809 | 62.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 908 | 62.36 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 9 | 12 |
| 970 | 62.46 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 993 | 62.49 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 998 | 62.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 1 |