BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0168200 Os01g0168200|AK103756
(131 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0168200 Similar to Thioredoxin-like protein 273 3e-74
Os05g0169000 Similar to Thioredoxin-like protein 231 1e-61
Os05g0480200 Thioredoxin domain 2 containing protein 137 2e-33
U92541 111 1e-25
Os07g0186000 Similar to Thioredoxin h isoform 1 111 1e-25
Os09g0401200 Similar to HSP associated protein like 105 9e-24
Os05g0508500 Similar to Thioredoxin H 103 2e-23
Os07g0190800 Similar to Thioredoxin h 98 2e-21
Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5) 94 2e-20
Os04g0629500 Similar to Thioredoxin h 90 5e-19
AK110198 84 3e-17
Os04g0367800 Thioredoxin-related domain containing protein 78 2e-15
Os12g0281300 Similar to Pi-ta protein 75 9e-15
Os02g0639900 Similar to Thioredoxin M-type, chloroplast pre... 63 5e-11
Os12g0188700 Similar to Thioredoxin (TRX) 63 6e-11
>Os01g0168200 Similar to Thioredoxin-like protein
Length = 131
Score = 273 bits (698), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MGSCVGKERSDEEDKIDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRV 60
MGSCVGKERSDEEDKIDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRV
Sbjct: 1 MGSCVGKERSDEEDKIDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRV 60
Query: 61 IAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPEL 120
IAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPEL
Sbjct: 61 IAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPEL 120
Query: 121 EKKVAALADSA 131
EKKVAALADSA
Sbjct: 121 EKKVAALADSA 131
>Os05g0169000 Similar to Thioredoxin-like protein
Length = 132
Score = 231 bits (589), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/132 (82%), Positives = 121/132 (91%), Gaps = 1/132 (0%)
Query: 1 MGSCVGKERSD-EEDKIDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCR 59
MG CVGK R EEDK+DFKGGNVHVI++KE+WD KI EANKDGKIV+ANFSA+WCGPCR
Sbjct: 1 MGGCVGKGRRHIEEDKLDFKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCR 60
Query: 60 VIAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPE 119
VIAP+YAEMS+TYPQ MFLTIDVD+LMDFSSSWDIRATPTFFF+KN +QVDKLVGANKPE
Sbjct: 61 VIAPIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPE 120
Query: 120 LEKKVAALADSA 131
LEKKV ALAD +
Sbjct: 121 LEKKVQALADGS 132
>Os05g0480200 Thioredoxin domain 2 containing protein
Length = 135
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Query: 1 MGSCVGKERSDEEDKIDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRV 60
MG C G D E+ +D+ GGNV ++++++NWD+ + E + GK V+ FSA WC PCR
Sbjct: 1 MGCC-GSSTVDAEEHLDYSGGNVTLVTDQKNWDNTMEEVAEHGKTVVLKFSAIWCTPCRN 59
Query: 61 IAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPEL 120
AP++AE+S YP +F+++DVDE+ + + +D+RATPTF F+KN E++DKLVG N +L
Sbjct: 60 AAPLFAELSLKYPDIVFVSVDVDEMPELVTQYDVRATPTFIFMKNNEEIDKLVGGNHEDL 119
Query: 121 EKKVAAL 127
++K L
Sbjct: 120 QEKFEQL 126
>U92541
Length = 122
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 79/115 (68%), Gaps = 4/115 (3%)
Query: 21 GNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFMFLTI 80
G V NK+ +D ++ +A + GK+VI +F+A+WCGPCR IAPV+AE ++ +P +FL +
Sbjct: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65
Query: 81 DVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELE----KKVAALADSA 131
DVDEL + + +++ A PTF F+K+G + DK+VGA K +L+ K V A A SA
Sbjct: 66 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA 120
>Os07g0186000 Similar to Thioredoxin h isoform 1
Length = 122
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 79/115 (68%), Gaps = 4/115 (3%)
Query: 21 GNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFMFLTI 80
G V NK+ +D ++ +A + GK+VI +F+A+WCGPCR IAPV+AE ++ +P +FL +
Sbjct: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65
Query: 81 DVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELE----KKVAALADSA 131
DVDEL + + +++ A PTF F+K+G + DK+VGA K +L+ K V A A SA
Sbjct: 66 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASA 120
>Os09g0401200 Similar to HSP associated protein like
Length = 317
Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Query: 18 FKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFMF 77
K G+V I + D K+ A+ ++V+ F+AAWCGPCR I PV +++ + +F
Sbjct: 205 LKDGDVIAIHSSSELDTKLKAASSLSRLVVLYFTAAWCGPCRFIGPVCKSLAEKHRNVVF 264
Query: 78 LTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELEKKVA 125
L +D+DEL + W++ + P+FFF++NG+++DK+VGA+K LE+KVA
Sbjct: 265 LKVDIDELNSVAYRWNVSSVPSFFFVRNGKEIDKVVGADKNGLERKVA 312
>Os05g0508500 Similar to Thioredoxin H
Length = 121
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 70/104 (67%)
Query: 21 GNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFMFLTI 80
G V I + + W +I EAN K+V+ +F+A+WCGPCR+IAPV+A++++ + +FL +
Sbjct: 12 GTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKV 71
Query: 81 DVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELEKKV 124
DVDEL + + + A PTF F+K G+ D++VGA K EL K+
Sbjct: 72 DVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKL 115
>Os07g0190800 Similar to Thioredoxin h
Length = 138
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 19 KGGNVHVIS--NKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFM 76
+GG V++ +K WD K+V+ +FSA+WCGPC+++ PV+ EM+ +
Sbjct: 17 EGGESAVVAVHSKAKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTDVA 76
Query: 77 FLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELEKKV 124
FL +DVDEL + + +W + A PTF + GE+V ++VGA+K ELEK +
Sbjct: 77 FLKVDVDELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKDELEKTI 124
>Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5)
Length = 134
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 20 GGNVHVIS--NKENWDHKI-AEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFM 76
GG+ V++ + WD + A + K+++ +FSA WCGPCR I P + +M+ + +
Sbjct: 18 GGDSRVVAVHSTATWDEQWGAHKSNPNKLIVIDFSATWCGPCRFIEPAFKDMAGRFADAV 77
Query: 77 FLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELEKKVAALADSA 131
F IDVDEL + + W + A PTF +K G++V ++VGA K ELE+KV S+
Sbjct: 78 FFKIDVDELSEVARQWKVEAMPTFVLIKGGKEVSRVVGAKKDELERKVNMFISSS 132
>Os04g0629500 Similar to Thioredoxin h
Length = 133
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 70/105 (66%)
Query: 26 ISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFMFLTIDVDEL 85
+ +E+WD + +A+ +G V+A+F A+WC + + E++QT+P+ +FL +DVD++
Sbjct: 17 VEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYVDVDDV 76
Query: 86 MDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELEKKVAALADS 130
SS ++A PTFF +K+ E V+K+VGAN E++K V A A+S
Sbjct: 77 QSVSSKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMVDASAES 121
>AK110198
Length = 961
Score = 84.0 bits (206), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 44 KIVIANFSAAWCGPCRVIAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFL 103
K+V+ +F A WCGPC+VIAPV+ ++ +P FL +DVD + + + +RA PTF FL
Sbjct: 21 KLVVVDFHALWCGPCKVIAPVFQQLVTRHPNVTFLKVDVDRVQAVAQRYRVRAMPTFLFL 80
Query: 104 KNGEQVDKLVGANKPEL 120
KN VD L GA+ L
Sbjct: 81 KNKNVVDTLQGADPNRL 97
>Os04g0367800 Thioredoxin-related domain containing protein
Length = 40
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/37 (81%), Positives = 35/37 (94%)
Query: 46 VIANFSAAWCGPCRVIAPVYAEMSQTYPQFMFLTIDV 82
V+ NFSA+WCGPCRVIAP+YAEMS+TYPQ MFLTID+
Sbjct: 1 VVENFSASWCGPCRVIAPIYAEMSKTYPQLMFLTIDM 37
>Os12g0281300 Similar to Pi-ta protein
Length = 1033
Score = 75.5 bits (184), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 7 KERSDEEDKIDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYA 66
+E S EED G V V E + +++A + K+V+ F+ + C R IAP +
Sbjct: 902 REISIEEDMPTGAEGTVIVPHTMEQFALHMSQAKQSHKLVVIQFTTSRCPASRYIAPAFT 961
Query: 67 EMSQTYPQFMFLTIDV--DELMDFSSSWDIRA-TPTFFFLKNGEQVDKLVGANKPELEKK 123
E ++ + +F+ ++V DEL + +DI PTFFF+K+GE++DK+ GANK L K
Sbjct: 962 EYAKEFAGAVFIKVNVDSDELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGANKELLRAK 1021
Query: 124 V 124
+
Sbjct: 1022 I 1022
>Os02g0639900 Similar to Thioredoxin M-type, chloroplast precursor (TRX-M)
Length = 173
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 28 NKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTYP-QFMFLTIDVDELM 86
K W + E+ V+ F A+WCGPC++I PV ++S+ Y + ++ DE
Sbjct: 72 TKSTWQSLVVESELP---VLVEFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENP 128
Query: 87 DFSSSWDIRATPTFFFLKNGEQVDKLVGA 115
D ++ + IR+ PT KNGE+ D ++GA
Sbjct: 129 DIATQFGIRSIPTMMIFKNGEKKDAVIGA 157
>Os12g0188700 Similar to Thioredoxin (TRX)
Length = 172
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 30 ENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTY-PQFMFLTIDVDELMDF 88
+NWD + + V+ F A WCGPCR+IAPV E+++ Y + ++ D+ +
Sbjct: 73 KNWDSMVLGSEAP---VLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNI 129
Query: 89 SSSWDIRATPTFFFLKNGEQVDKLVGA 115
++++ IR+ PT KNGE+ + ++GA
Sbjct: 130 ATNYGIRSIPTVLMFKNGEKKESVIGA 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,752,021
Number of extensions: 182489
Number of successful extensions: 430
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 16
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)