Os05g0169000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin-like protein.
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Os05g0169000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thioredoxin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.67 | 0.285 | 12 | 0.136 | 1.69 | -0.638 | -0.718 | -0.031 | 0.155 | 8.02 | 70 | 376 | -- | -- |
| 36.67 | 0.282 | 12 | 0.138 | 1.69 | -0.64 | -0.712 | -- | 0.155 | 8.02 | 70 | 376 | -- | -- |
| 38.1 | 0.287 | 12 | 0.128 | 1.7 | -0.633 | -- | 0.199 | 0.159 | 8.03 | 69.91 | 376 | -- | -- |
| 38.09 | 0.287 | 12 | 0.115 | 1.69 | -0.609 | -- | -- | 0.171 | 8.08 | 70.34 | 368 | -- | -- |
| 114.1 | 0.498 | 12 | 0.36 | -- | -1.8 | -- | 0.322 | 0.325 | -- | 74.81 | 607 | -- | -- |
| 46.06 | 0.318 | 12 | 0.0537 | 2 | -- | -0.535 | -- | 0.131 | 7.47 | -- | -- | -- | -- |
| 46.85 | 0.321 | 12 | 0.0413 | 2 | -- | -- | -- | 0.132 | 7.48 | -- | -- | -- | -- |
| 112.93 | 0.495 | 12 | 0.201 | -- | -1.82 | -- | -- | 0.243 | -- | 74.31 | 592 | -- | -- |
| 38.44 | 0.289 | 12 | -- | 1.69 | -0.592 | -- | -- | 0.158 | 8.06 | 70 | 367 | -- | -- |
| 260.87 | 0.755 | 12 | 0.0721 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 46.9 | 0.32 | 12 | -- | 2 | -- | -- | -- | 0.127 | 7.48 | -- | -- | -- | -- |
| 114 | 0.497 | 12 | -- | -- | -1.81 | -- | -- | 0.22 | -- | 74.88 | 592 | -- | -- |
| 261 | 0.754 | 12 | -- | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.62 | radiation | 20.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 7 | 28.99 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 4 |
| 8 | 29.00 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 21 | 29.17 | radiation | 1.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 26 | 29.45 | radiation | 10.0 | 270 | > th | dose independent | rect. | 14 | 4 |
| 41 | 29.72 | radiation | 10.0 | 270 | < th | dose independent | sin | 15 | NA |
| 43 | 29.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 46 | 29.87 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 63 | 29.99 | humidity | 70.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 64 | 30.00 | radiation | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 80 | 30.03 | radiation | 1.0 | 270 | < th | dose independent | sin | 17 | NA |
| 82 | 30.05 | humidity | 70.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 84 | 30.08 | radiation | 10.0 | 270 | > th | dose independent | sin | 15 | NA |
| 91 | 30.20 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 99 | 30.41 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 14 | 3 |
| 127 | 30.54 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 13 | 5 |
| 132 | 30.63 | humidity | 90.0 | 90 | < th | dose independent | rect. | 14 | 5 |
| 134 | 30.70 | humidity | 70.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 135 | 30.73 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 172 | 30.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 191 | 31.03 | humidity | 90.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 322 | 31.64 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 344 | 31.67 | humidity | 70.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 376 | 31.74 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 403 | 31.90 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 19 |
| 406 | 31.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 414 | 32.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 451 | 32.08 | humidity | 70.0 | 270 | > th | dose independent | sin | 16 | NA |
| 469 | 32.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 493 | 32.18 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 502 | 32.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 513 | 32.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 527 | 32.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 6 |
| 532 | 32.37 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 543 | 32.40 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 14 | 5 |
| 545 | 32.40 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 14 | 5 |
| 551 | 32.42 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 597 | 32.53 | temperature | 25.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 626 | 32.67 | humidity | 70.0 | 270 | < th | dose independent | sin | 16 | NA |
| 661 | 32.75 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 663 | 32.76 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 714 | 32.87 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 736 | 32.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 749 | 33.00 | wind | 3.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 760 | 33.02 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 763 | 33.04 | humidity | 70.0 | 270 | > th | dose independent | rect. | 8 | 15 |
| 765 | 33.04 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 19 |
| 767 | 33.05 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 779 | 33.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 796 | 33.11 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 6 |
| 819 | 33.17 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 821 | 33.17 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 881 | 33.29 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 19 |
| 882 | 33.29 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 19 |
| 935 | 33.39 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 15 |