BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0169000 Os05g0169000|AK060918
(132 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0169000 Similar to Thioredoxin-like protein 275 9e-75
Os01g0168200 Similar to Thioredoxin-like protein 231 1e-61
Os05g0480200 Thioredoxin domain 2 containing protein 134 1e-32
U92541 106 5e-24
Os07g0186000 Similar to Thioredoxin h isoform 1 106 5e-24
Os05g0508500 Similar to Thioredoxin H 105 1e-23
Os09g0401200 Similar to HSP associated protein like 102 1e-22
Os07g0190800 Similar to Thioredoxin h 95 1e-20
Os04g0629500 Similar to Thioredoxin h 92 1e-19
Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5) 92 1e-19
AK110198 87 2e-18
Os04g0367800 Thioredoxin-related domain containing protein 83 6e-17
Os12g0281300 Similar to Pi-ta protein 71 2e-13
>Os05g0169000 Similar to Thioredoxin-like protein
Length = 132
Score = 275 bits (702), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGGCVGKGRRHIEEDKLDFKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCR 60
MGGCVGKGRRHIEEDKLDFKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCR
Sbjct: 1 MGGCVGKGRRHIEEDKLDFKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCR 60
Query: 61 VIAPIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPE 120
VIAPIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPE
Sbjct: 61 VIAPIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPE 120
Query: 121 LEKKVQALADGS 132
LEKKVQALADGS
Sbjct: 121 LEKKVQALADGS 132
>Os01g0168200 Similar to Thioredoxin-like protein
Length = 131
Score = 231 bits (589), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/132 (82%), Positives = 121/132 (91%), Gaps = 1/132 (0%)
Query: 1 MGGCVGKGRRHIEEDKLDFKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCR 60
MG CVGK R EEDK+DFKGGNVHVI++KE+WD KI EANKDGKIV+ANFSA+WCGPCR
Sbjct: 1 MGSCVGKERSD-EEDKIDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCR 59
Query: 61 VIAPIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPE 120
VIAP+YAEMS+TYPQ MFLTIDVD+LMDFSSSWDIRATPTFFF+KN +QVDKLVGANKPE
Sbjct: 60 VIAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPE 119
Query: 121 LEKKVQALADGS 132
LEKKV ALAD +
Sbjct: 120 LEKKVAALADSA 131
>Os05g0480200 Thioredoxin domain 2 containing protein
Length = 135
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 88/126 (69%), Gaps = 1/126 (0%)
Query: 3 GCVGKGRRHIEEDKLDFKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVI 62
GC G EE LD+ GGNV ++T +++WD +EE + GK VV FSA WC PCR
Sbjct: 2 GCCGSSTVDAEE-HLDYSGGNVTLVTDQKNWDNTMEEVAEHGKTVVLKFSAIWCTPCRNA 60
Query: 63 APIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELE 122
AP++AE+S YP ++F+++DVD++ + + +D+RATPTF F+KN +++DKLVG N +L+
Sbjct: 61 APLFAELSLKYPDIVFVSVDVDEMPELVTQYDVRATPTFIFMKNNEEIDKLVGGNHEDLQ 120
Query: 123 KKVQAL 128
+K + L
Sbjct: 121 EKFEQL 126
>U92541
Length = 122
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 74/104 (71%)
Query: 22 GNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTI 81
G V +K+++D ++ +A + GK+V+ +F+ASWCGPCR IAP++AE +K +P +FL +
Sbjct: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65
Query: 82 DVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKV 125
DVD+L + + +++ A PTF FIK+ + DK+VGA K +L+ +
Sbjct: 66 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109
>Os07g0186000 Similar to Thioredoxin h isoform 1
Length = 122
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 74/104 (71%)
Query: 22 GNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTI 81
G V +K+++D ++ +A + GK+V+ +F+ASWCGPCR IAP++AE +K +P +FL +
Sbjct: 6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV 65
Query: 82 DVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKV 125
DVD+L + + +++ A PTF FIK+ + DK+VGA K +L+ +
Sbjct: 66 DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109
>Os05g0508500 Similar to Thioredoxin H
Length = 121
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 71/105 (67%)
Query: 22 GNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTI 81
G V I S ++W +IEEAN K+VV +F+ASWCGPCR+IAP++A+++K + +FL +
Sbjct: 12 GTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKV 71
Query: 82 DVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKVQ 126
DVD+L + + + A PTF F+K D++VGA K EL K++
Sbjct: 72 DVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLE 116
>Os09g0401200 Similar to HSP associated protein like
Length = 317
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 73/107 (68%)
Query: 19 FKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMF 78
K G+V I S + D K++ A+ ++VV F+A+WCGPCR I P+ +++ + ++F
Sbjct: 205 LKDGDVIAIHSSSELDTKLKAASSLSRLVVLYFTAAWCGPCRFIGPVCKSLAEKHRNVVF 264
Query: 79 LTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKV 125
L +D+D+L + W++ + P+FFF++N K++DK+VGA+K LE+KV
Sbjct: 265 LKVDIDELNSVAYRWNVSSVPSFFFVRNGKEIDKVVGADKNGLERKV 311
>Os07g0190800 Similar to Thioredoxin h
Length = 138
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 20 KGGNVHVIT--SKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLM 77
+GG V+ SK WD + K+VV +FSASWCGPC+++ P++ EM+ + +
Sbjct: 17 EGGESAVVAVHSKAKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTDVA 76
Query: 78 FLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKVQ 126
FL +DVD+L + + +W + A PTF + ++V ++VGA+K ELEK +
Sbjct: 77 FLKVDVDELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKDELEKTIN 125
>Os04g0629500 Similar to Thioredoxin h
Length = 133
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 70/105 (66%)
Query: 27 ITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTIDVDDL 86
+ +E WD + +A+ +G VVA+F ASWC + + E+++T+P+++FL +DVDD+
Sbjct: 17 VEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYVDVDDV 76
Query: 87 MDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKVQALADG 131
SS ++A PTFF IK+++ V+K+VGAN E++K V A A+
Sbjct: 77 QSVSSKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMVDASAES 121
>Os03g0800700 Similar to Thioredoxin H-type 5 (TRX-H-5)
Length = 134
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 21 GGNVHVIT--SKEDWDRKI-EEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLM 77
GG+ V+ S WD + + K++V +FSA+WCGPCR I P + +M+ + +
Sbjct: 18 GGDSRVVAVHSTATWDEQWGAHKSNPNKLIVIDFSATWCGPCRFIEPAFKDMAGRFADAV 77
Query: 78 FLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKVQALADGS 132
F IDVD+L + + W + A PTF IK K+V ++VGA K ELE+KV S
Sbjct: 78 FFKIDVDELSEVARQWKVEAMPTFVLIKGGKEVSRVVGAKKDELERKVNMFISSS 132
>AK110198
Length = 961
Score = 87.4 bits (215), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 24 VHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTIDV 83
V + S ++D +++ A K+VV +F A WCGPC+VIAP++ ++ +P + FL +DV
Sbjct: 2 VKEVVSATEFDAELQAAGS--KLVVVDFHALWCGPCKVIAPVFQQLVTRHPNVTFLKVDV 59
Query: 84 DDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKVQ 126
D + + + +RA PTF F+KN+ VD L GA+ L V+
Sbjct: 60 DRVQAVAQRYRVRAMPTFLFLKNKNVVDTLQGADPNRLTALVK 102
>Os04g0367800 Thioredoxin-related domain containing protein
Length = 40
Score = 82.8 bits (203), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/37 (94%), Positives = 36/37 (97%)
Query: 47 VVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTIDV 83
VV NFSASWCGPCRVIAPIYAEMSKTYPQLMFLTID+
Sbjct: 1 VVENFSASWCGPCRVIAPIYAEMSKTYPQLMFLTIDM 37
>Os12g0281300 Similar to Pi-ta protein
Length = 1033
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 12 IEEDKLDFKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSK 71
IEED G V V + E + + +A + K+VV F+ S C R IAP + E +K
Sbjct: 906 IEEDMPTGAEGTVIVPHTMEQFALHMSQAKQSHKLVVIQFTTSRCPASRYIAPAFTEYAK 965
Query: 72 TYPQLMFLTIDV--DDLMDFSSSWDIRA-TPTFFFIKNEKQVDKLVGANKPELEKKVQ 126
+ +F+ ++V D+L + +DI PTFFF+K+ +++DK+ GANK L K++
Sbjct: 966 EFAGAVFIKVNVDSDELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGANKELLRAKIR 1023
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,963,874
Number of extensions: 194947
Number of successful extensions: 465
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 13
Length of query: 132
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 42
Effective length of database: 12,336,541
Effective search space: 518134722
Effective search space used: 518134722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)