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Os04g0629500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thioredoxin h.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0256) R2 : 0.605
β1 : 0.923 (0.0939) R2dD : 0.0869 R2D : -0.0633
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.26 (0.0644) R2dE : 0.332 R2E : 0.223
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.956 (0.0547) R2dN8 : 0.354 R2N8 : 0.198
σ : 0.479
deviance : 105.89
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 27.26
memory length : 46
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.65
open length of G : 14.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.33 0.464 13.2 0.901 0.547 1.13 0.83 -0.871 0.988 16.9 20.22 79 4.97 14.8
98.83 0.463 13.2 0.927 0.502 1.13 0.449 -- 1.01 16.4 20.58 73 5.13 14.7
98.46 0.462 13.2 0.91 0.513 1.13 -- -0.606 0.997 16.2 20 73 5.08 14.7
98.69 0.463 13.2 0.907 0.464 1.17 -- -- 1.02 15.9 19.54 66 5.32 14.5
106.06 0.48 13.2 0.95 -- 1.25 -- -0.322 0.971 -- 26.08 56 5.53 14.7
159 0.591 13.2 0.876 0.806 -- 0.553 -- 0.935 16.6 -- -- -- --
159.76 0.592 13.2 0.88 0.808 -- -- -- 0.938 16.4 -- -- -- --
105.89 0.479 13.2 0.923 -- 1.26 -- -- 0.956 -- 27.26 46 5.65 14.7
121.37 0.513 13.2 -- 0.445 1.17 -- -- 0.967 15.8 20 66 5.33 14.6
194.74 0.652 13.2 0.848 -- -- -- -- 0.917 -- -- -- -- --
180.18 0.628 13.2 -- 0.791 -- -- -- 0.84 16.4 -- -- -- --
128.19 0.527 13.2 -- -- 1.23 -- -- 0.858 -- 27.47 43 5.68 14.7
213.73 0.682 13.2 -- -- -- -- -- 0.823 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.04 radiation 20.0 90 < th dose dependent rect. 5 15
8 104.62 radiation 10.0 90 < th dose independent rect. 5 15
11 106.44 radiation 20.0 90 < th dose dependent sin 0 NA
49 112.17 humidity 50.0 30 > th dose dependent rect. 5 15
51 112.23 radiation 10.0 90 < th dose independent sin 0 NA
53 112.36 temperature 10.0 270 > th dose dependent rect. 19 8
57 112.61 radiation 10.0 90 > th dose independent sin 0 NA
59 112.75 radiation 30.0 90 < th dose dependent rect. 13 22
71 113.35 radiation 30.0 90 < th dose dependent rect. 11 23
129 115.46 radiation 10.0 90 > th dose independent rect. 7 10
141 115.72 radiation 20.0 90 < th dose dependent rect. 5 10
161 116.53 radiation 30.0 90 < th dose dependent rect. 15 19
166 116.54 humidity 70.0 30 > th dose independent rect. 5 15
196 116.98 radiation 10.0 90 > th dose independent rect. 17 23
281 118.19 radiation 10.0 90 > th dose independent no NA NA
364 118.26 radiation 10.0 90 > th dose independent rect. 9 23
387 118.76 radiation 20.0 90 < th dose dependent rect. 15 23
409 119.01 radiation 20.0 90 < th dose independent rect. 11 23
415 119.09 radiation 20.0 90 < th dose dependent rect. 5 6
434 119.40 radiation 20.0 90 < th dose dependent no NA NA
435 119.40 radiation 20.0 90 < th dose dependent rect. 21 23
477 119.91 atmosphere 1000.0 270 > th dose independent rect. 15 16
534 120.67 atmosphere 1015.0 30 < th dose dependent rect. 20 9
535 120.70 wind 1.0 90 > th dose independent rect. 4 16
540 120.79 atmosphere 1010.0 90 < th dose independent rect. 20 9
553 120.97 radiation 40.0 270 < th dose independent rect. 2 16
567 121.08 atmosphere 995.0 270 > th dose dependent rect. 14 17
604 121.50 radiation 10.0 90 < th dose independent rect. 5 9
619 121.63 radiation 20.0 90 < th dose dependent rect. 9 23
685 122.03 humidity 80.0 10 < th dose independent rect. 7 10
702 122.14 precipitation 0.1 90 < th dose independent rect. 20 9
703 122.14 precipitation 0.1 90 < th dose dependent rect. 20 9
708 122.19 atmosphere 995.0 90 > th dose independent rect. 5 15
711 122.23 radiation 20.0 90 < th dose dependent rect. 3 23
743 122.43 temperature 15.0 90 > th dose independent rect. 20 9
758 122.49 radiation 20.0 90 < th dose independent rect. 15 18
762 122.52 humidity 50.0 270 > th dose dependent rect. 2 16
773 122.65 radiation 1.0 90 > th dose dependent rect. 7 10
779 122.68 radiation 30.0 10 < th dose dependent rect. 17 23
787 122.72 radiation 30.0 90 < th dose dependent rect. 1 23
791 122.75 radiation 10.0 270 < th dose independent rect. 3 5
803 122.79 radiation 10.0 270 < th dose dependent rect. 3 5
838 122.87 radiation 20.0 90 < th dose independent rect. 17 16
875 123.01 radiation 1.0 90 < th dose dependent rect. 20 9
897 123.16 radiation 20.0 90 < th dose independent rect. 15 20
904 123.20 temperature 15.0 90 > th dose independent rect. 5 15
907 123.23 temperature 10.0 1440 > th dose independent rect. 21 9
910 123.23 temperature 30.0 1440 < th dose independent rect. 21 9
914 123.23 humidity 50.0 1440 > th dose independent rect. 21 9
920 123.23 atmosphere 995.0 1440 > th dose independent rect. 21 9
921 123.23 radiation 20.0 1440 < th dose independent rect. 21 9
930 123.23 temperature 10.0 1440 > th dose independent rect. 6 15
952 123.39 radiation 10.0 270 < th dose independent rect. 2 7
953 123.39 radiation 10.0 90 < th dose independent rect. 21 23
965 123.44 radiation 1.0 90 < th dose independent rect. 20 9
968 123.45 wind 9.0 90 < th dose independent rect. 5 15
982 123.54 wind 9.0 90 < th dose independent rect. 20 9
983 123.54 atmosphere 995.0 270 > th dose independent rect. 3 16
988 123.57 temperature 30.0 90 < th dose independent rect. 20 9
989 123.57 humidity 50.0 90 > th dose independent rect. 20 9
992 123.57 atmosphere 995.0 90 > th dose independent rect. 20 9
997 123.57 atmosphere 1015.0 90 < th dose independent rect. 5 15
1000 123.58 radiation 10.0 90 < th dose independent rect. 15 23