BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0629500 Os04g0629500|AK072821
(133 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11530.1 | chr1:3874518-3875311 FORWARD LENGTH=119 110 1e-25
AT3G08710.1 | chr3:2645590-2646304 FORWARD LENGTH=141 67 3e-12
AT3G56420.1 | chr3:20922140-20922890 REVERSE LENGTH=155 64 2e-11
AT3G51030.1 | chr3:18951123-18951955 REVERSE LENGTH=115 60 4e-10
AT2G40790.1 | chr2:17023109-17023915 REVERSE LENGTH=155 59 8e-10
AT4G04950.1 | chr4:2517882-2519924 REVERSE LENGTH=489 54 3e-08
AT1G45145.1 | chr1:17075264-17076256 REVERSE LENGTH=119 54 3e-08
AT5G39950.1 | chr5:15990885-15991881 REVERSE LENGTH=134 53 5e-08
AT1G19730.1 | chr1:6823163-6824020 REVERSE LENGTH=120 53 6e-08
AT4G32580.1 | chr4:15719878-15720535 REVERSE LENGTH=161 52 7e-08
AT1G59730.1 | chr1:21952759-21953392 REVERSE LENGTH=130 50 3e-07
AT5G42980.1 | chr5:17242772-17243718 FORWARD LENGTH=119 49 1e-06
AT3G17880.1 | chr3:6123534-6126113 FORWARD LENGTH=381 47 4e-06
>AT1G11530.1 | chr1:3874518-3875311 FORWARD LENGTH=119
Length = 118
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 72/110 (65%)
Query: 12 SKVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYX 71
++VVK++ ESW+ +V+QA N+ P+VAHF A WC+ S+ MN FEELA + + LFL
Sbjct: 2 ARVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIV 61
Query: 72 XXXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMVDASAES 121
+L VKAMPTF +KD ++K+VGANPDE+KK VD +S
Sbjct: 62 DVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVDGFVQS 111
>AT3G08710.1 | chr3:2645590-2646304 FORWARD LENGTH=141
Length = 140
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%)
Query: 17 VEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYXXXXXX 76
+ +ESWD + +A +G VVA+F A+WC + F EL++ H ++FL
Sbjct: 28 ITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDEL 87
Query: 77 XXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMVDASAES 121
+KA PTFF +K+ + + K+VGAN E++K V + +S
Sbjct: 88 SDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKVTSIIDS 132
>AT3G56420.1 | chr3:20922140-20922890 REVERSE LENGTH=155
Length = 154
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 2 EIQQQKGVGNSKVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQ 61
+ + Q G KV V + E W+ + +A+N G +V +F A WCV + F +LA
Sbjct: 31 QTRSQHG-SKGKVHPVSRIEKWEEKITEANNHGKILVVNFSAPWCVPCKKIEPVFRDLAS 89
Query: 62 THPEILFLYXXXXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMVDASAES 121
+P ++F+ + V+A PT +KD ++K+VGA E++K A+A+
Sbjct: 90 RYPSMIFVTVDVEELAEFSNEWNVEATPTVVFLKDGRQMDKLVGAETSELQKKTAAAADL 149
Query: 122 F 122
F
Sbjct: 150 F 150
>AT3G51030.1 | chr3:18951123-18951955 REVERSE LENGTH=115
Length = 114
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 13 KVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYXX 72
+V+ E+W+ + +A+ VV F ASWC + F +LA+ P +LFL
Sbjct: 7 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVD 66
Query: 73 XXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMV 115
++AMPTF +K+ ++++K+VGA DE++ +
Sbjct: 67 TDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109
>AT2G40790.1 | chr2:17023109-17023915 REVERSE LENGTH=155
Length = 154
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%)
Query: 13 KVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYXX 72
KV V + E W+ + +A++ G +V +F ASWC+ S ++ ++ELA T+ ++F+
Sbjct: 41 KVHPVSRMEKWEEKITEANSHGKILVVNFKASWCLPSKTILPIYQELASTYTSMIFVTID 100
Query: 73 XXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMVDASA 119
+ V A PT +KD ++K+VG + E++K A+A
Sbjct: 101 VEELAEFSHEWNVDATPTVVFLKDGRQMDKLVGGDAAELQKKTAAAA 147
>AT4G04950.1 | chr4:2517882-2519924 REVERSE LENGTH=489
Length = 488
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 27 VNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYXXXXXXXXXXXKLGVK 86
++ G PVV HF ASWC S M+ F LA P F V
Sbjct: 14 LDNLRQSGAPVVLHFWASWCDASKQMDQVFSHLATDFPRAHFFRVEAEEHPEISEAYSVA 73
Query: 87 AMPTFFLIKDKEVVNKIVGANPDEVKKMVD-----------ASAESFGVTAPPDIV 131
A+P F KD + V+ + GA+P + V A+ S G+ A P I+
Sbjct: 74 AVPYFVFFKDGKTVDTLEGADPSSLANKVGKVAGSSTSAEPAAPASLGLAAGPTIL 129
>AT1G45145.1 | chr1:17075264-17076256 REVERSE LENGTH=119
Length = 118
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%)
Query: 10 GNSKVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFL 69
G +V+ E W+ V A+ +V F ASWC + F E+A+ ++F
Sbjct: 3 GEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFF 62
Query: 70 YXXXXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEV 111
+ V+AMPTF +K+ +++++VGA DE+
Sbjct: 63 KIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEI 104
>AT5G39950.1 | chr5:15990885-15991881 REVERSE LENGTH=134
Length = 133
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%)
Query: 12 SKVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYX 71
S+V+K W L N+ +V F ASWC + +A ++ F+
Sbjct: 25 SRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKL 84
Query: 72 XXXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMV 115
+ V AMPTF L+K + + +I+GA DE++K V
Sbjct: 85 DVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKV 128
>AT1G19730.1 | chr1:6823163-6824020 REVERSE LENGTH=120
Length = 119
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 13 KVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTH-PEILFLYX 71
+V+ + W + +++A +V F ASWC + F +LA+ +F
Sbjct: 7 QVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKV 66
Query: 72 XXXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEVK 112
+ GV+AMPTF IK EVV+K+VGAN ++++
Sbjct: 67 DVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQ 107
>AT4G32580.1 | chr4:15719878-15720535 REVERSE LENGTH=161
Length = 160
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 17 VEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLYXXXXXX 76
V KEE ++ + G P+V HF ASWC S M+ F LA P F
Sbjct: 9 VSKEE-----LDNLRHSGAPLVLHFWASWCDASKQMDQVFSHLATDFPRAHFFRVEAEEH 63
Query: 77 XXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMVDASA-----ESFGVTAPPDIV 131
V +P F KD + V+ + GA+P + V A S G+ A P I+
Sbjct: 64 PEISEAYSVALVPYFVFFKDGKTVDTLEGADPSSLANKVGKVAGSITPASLGLAAGPTIL 123
>AT1G59730.1 | chr1:21952759-21953392 REVERSE LENGTH=130
Length = 129
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%)
Query: 11 NSKVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFLY 70
N VV++E W + +V F A WC +M + E+A + E +F
Sbjct: 20 NGFVVEIESRRQWKSLFDSMKGSNKLLVIDFTAVWCGPCKAMEPRVREIASKYSEAVFAR 79
Query: 71 XXXXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMVD 116
+P F +K E ++++VGA PDE+ K ++
Sbjct: 80 VDVDRLMDVAGTYRAITLPAFVFVKRGEEIDRVVGAKPDELVKKIE 125
>AT5G42980.1 | chr5:17242772-17243718 FORWARD LENGTH=119
Length = 118
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 10 GNSKVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHPEILFL 69
+V+ E W + A+ +V F A+WC + F +LA+ H +++F
Sbjct: 3 AEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFF 62
Query: 70 YXXXXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGANPDEV 111
+ V+AMPTF +K+ E+ +VGA +E+
Sbjct: 63 KVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEI 104
>AT3G17880.1 | chr3:6123534-6126113 FORWARD LENGTH=381
Length = 380
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%)
Query: 2 EIQQQKGVGNSKVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQ 61
E + Q + + +V+ + + A ++ +F A+WC M+ + LA
Sbjct: 260 EREAQAALNDGEVISIHSTSELEAKTKAAKKASRLLILYFTATWCGPCRYMSPLYSNLAT 319
Query: 62 THPEILFLYXXXXXXXXXXXKLGVKAMPTFFLIKDKEVVNKIVGAN 107
H ++FL + ++PTF I+D + V+K+VGA+
Sbjct: 320 QHSRVVFLKVDIDKANDVAASWNISSVPTFCFIRDGKEVDKVVGAD 365
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,642,950
Number of extensions: 87069
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 16
Length of query: 133
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 45
Effective length of database: 8,693,961
Effective search space: 391228245
Effective search space used: 391228245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)