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Os05g0480200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thioredoxin domain 2 containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.75 (0.0367) R2 : 0.15
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.75 (0.119) R2dE : 0.0759 R2E : 0.0167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.573 (0.0781) R2dN8 : 0.133 R2N8 : 0.0742
σ : 0.688
deviance : 218.03
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1002
memory length : 9
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.31 0.67 5.39 2.21 0.0759 5.89 0.995 -28.8 -0.535 3.34 1000 8 -- --
214.54 0.687 5.74 0.26 0.0606 0.815 0.928 -- -0.535 3.69 1000 8 -- --
205.7 0.673 5.4 2.14 0.0933 5.66 -- -27.5 -0.543 5.26 1000 3 -- --
216.72 0.69 5.74 0.198 0.0956 0.752 -- -- -0.554 7.02 1002 8 -- --
206.16 0.672 5.4 2.14 -- 5.66 -- -27.5 -0.541 -- 1000 3 -- --
233.28 0.716 5.72 0.11 0.0844 -- 1 -- -0.478 3.74 -- -- -- --
236.02 0.719 5.72 0.0952 0.117 -- -- -- -0.484 6.07 -- -- -- --
216.9 0.686 5.74 0.21 -- 0.773 -- -- -0.551 -- 1002 9 -- --
217.53 0.687 5.74 -- 0.0976 0.744 -- -- -0.574 7.13 1002 8 -- --
236.73 0.719 5.73 0.0986 -- -- -- -- -0.482 -- -- -- -- --
236.26 0.719 5.73 -- 0.119 -- -- -- -0.495 6.03 -- -- -- --
218.03 0.688 5.75 -- -- 0.75 -- -- -0.573 -- 1002 9 -- --
236.99 0.719 5.73 -- -- -- -- -- -0.493 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.29 temperature 30 14400 > th dose dependent rect. 8 1
15 195.57 temperature 30 14400 > th dose independent rect. 8 1
32 198.54 temperature 30 14400 < th dose independent rect. 4 5
34 198.78 temperature 30 14400 < th dose independent rect. 1 8
38 198.95 wind 1 14400 < th dose dependent rect. 2 1
41 199.26 temperature 30 14400 < th dose independent rect. 19 14
44 199.35 temperature 30 14400 < th dose independent rect. 21 12
50 199.82 temperature 25 270 > th dose dependent rect. 19 14
53 200.61 atmosphere 1000 10 > th dose independent rect. 3 23
64 202.30 atmosphere 1000 90 > th dose independent rect. 3 16
65 202.31 atmosphere 1000 270 > th dose independent rect. 14 16
69 202.72 temperature 25 270 > th dose dependent sin 9 NA
71 203.47 atmosphere 1000 90 > th dose independent rect. 3 18
73 203.56 temperature 10 90 > th dose dependent rect. 7 20
74 203.59 atmosphere 1000 270 > th dose independent rect. 1 18
79 203.91 temperature 25 270 > th dose dependent rect. 18 19
94 204.15 atmosphere 1000 90 > th dose independent rect. 16 15
95 204.21 temperature 15 90 > th dose dependent rect. 19 8
96 204.22 radiation 30 10 < th dose dependent rect. 3 23
102 204.55 atmosphere 995 90 > th dose dependent rect. 3 16
106 204.71 atmosphere 995 90 > th dose dependent rect. 3 18
107 204.75 atmosphere 1000 10 < th dose independent rect. 19 23
108 204.80 atmosphere 1000 10 < th dose independent rect. 1 23
110 204.83 atmosphere 1000 10 < th dose independent rect. 5 23
112 204.86 atmosphere 1000 10 < th dose independent rect. 7 23
113 204.87 atmosphere 1000 10 < th dose independent rect. 15 23
114 204.88 atmosphere 1000 10 > th dose independent rect. 16 15
115 204.88 atmosphere 1000 10 < th dose independent rect. 21 23
116 204.89 atmosphere 1000 10 < th dose independent rect. 9 23
117 204.90 atmosphere 1000 10 > th dose independent no NA NA
119 204.90 atmosphere 1000 10 < th dose independent no NA NA
120 204.90 atmosphere 1000 10 < th dose independent rect. 13 23
121 204.91 atmosphere 1000 10 < th dose independent rect. 23 23
123 204.94 atmosphere 1000 10 < th dose independent rect. 3 23
130 205.03 temperature 10 10 > th dose dependent rect. 7 21
142 205.11 atmosphere 1000 270 > th dose independent no NA NA
143 205.11 atmosphere 1000 270 < th dose independent rect. 4 23
145 205.14 atmosphere 1000 10 < th dose independent rect. 11 23
148 205.17 atmosphere 1000 30 < th dose independent rect. 17 23
159 205.29 atmosphere 1000 270 < th dose independent rect. 11 23
177 205.53 atmosphere 1000 270 < th dose independent no NA NA
178 205.54 atmosphere 1000 270 < th dose independent rect. 17 23
179 205.54 atmosphere 1000 270 < th dose independent rect. 20 23
203 205.77 wind 9 14400 > th dose dependent rect. 22 16
206 205.81 temperature 30 90 < th dose independent rect. 3 16
209 205.83 temperature 25 270 < th dose independent rect. 23 8
216 205.91 temperature 30 4320 > th dose independent rect. 11 1
222 205.95 wind 1 14400 < th dose independent rect. 2 1
242 206.09 wind 1 14400 > th dose independent rect. 2 1
243 206.09 temperature 30 4320 < th dose independent rect. 11 1
244 206.09 atmosphere 1000 270 > th dose independent rect. 24 21
250 206.10 wind 9 14400 > th dose dependent rect. 3 11
263 206.15 atmosphere 1005 270 > th dose independent rect. 3 1
269 206.17 radiation 40 90 < th dose dependent rect. 3 16
271 206.19 atmosphere 1005 90 > th dose independent rect. 3 4
304 206.39 temperature 30 270 < th dose independent rect. 1 17
312 206.45 wind 9 14400 > th dose dependent rect. 10 4
321 206.49 temperature 30 4320 > th dose dependent rect. 11 1
324 206.51 radiation 20 10 < th dose independent rect. 3 23
342 206.62 temperature 30 4320 > th dose independent rect. 8 4
380 206.73 temperature 30 4320 < th dose independent rect. 2 10
387 206.76 wind 9 14400 > th dose dependent rect. 12 2
388 206.76 temperature 15 30 > th dose dependent rect. 7 9
389 206.77 temperature 30 4320 < th dose independent rect. 23 13
391 206.77 temperature 30 4320 < th dose independent rect. 20 16
392 206.78 temperature 30 4320 < th dose independent rect. 8 4
400 206.83 temperature 30 4320 < th dose independent rect. 5 7
439 207.06 wind 9 14400 > th dose independent rect. 22 16
455 207.08 wind 1 1440 < th dose dependent rect. 7 1
456 207.08 humidity 50 1440 < th dose dependent rect. 16 1
459 207.09 radiation 20 90 < th dose independent rect. 3 16
464 207.12 humidity 50 1440 < th dose independent rect. 16 1
465 207.12 temperature 25 270 > th dose independent rect. 19 14
492 207.29 wind 9 14400 > th dose independent rect. 3 11
602 207.73 wind 1 14400 < th dose dependent rect. 9 2
623 207.84 temperature 30 10 > th dose independent rect. 9 7
642 207.88 temperature 25 4320 > th dose independent rect. 24 2
666 207.94 wind 9 14400 > th dose independent rect. 13 1
672 207.97 temperature 25 4320 < th dose independent rect. 1 1
679 208.01 wind 1 1440 < th dose independent rect. 7 1
681 208.02 temperature 25 4320 < th dose independent rect. 3 1
687 208.06 atmosphere 1005 30 > th dose independent rect. 3 6
688 208.06 atmosphere 1000 10 > th dose independent rect. 14 17
695 208.09 wind 9 14400 > th dose independent rect. 9 5
719 208.19 wind 1 1440 > th dose independent rect. 7 1
722 208.20 temperature 25 4320 > th dose dependent sin 8 NA
723 208.21 temperature 25 270 < th dose independent rect. 1 4
748 208.31 atmosphere 1005 270 > th dose independent rect. 24 7
777 208.47 radiation 20 90 < th dose independent rect. 3 18
813 208.64 radiation 40 90 < th dose dependent rect. 3 18
864 208.84 atmosphere 995 270 > th dose dependent rect. 1 18
883 208.92 atmosphere 995 270 > th dose dependent rect. 13 17
892 208.95 temperature 10 270 > th dose dependent rect. 7 17
902 209.00 atmosphere 995 10 > th dose dependent rect. 16 15
905 209.01 radiation 30 10 < th dose dependent rect. 4 15
947 209.16 temperature 25 270 < th dose independent sin 10 NA
952 209.16 atmosphere 995 90 > th dose dependent rect. 16 15
974 209.26 temperature 30 4320 > th dose independent sin 8 NA