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Os07g0190800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thioredoxin h.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0298) R2 : 0.482
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.21 (0.148) R2dE : 0.282 R2E : 0.358
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.57 (0.0654) R2dN8 : 0.124 R2N8 : 0.2
σ : 0.554
deviance : 141.37
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.29
memory length : 1218
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.97 0.525 11.6 0.171 0.317 -1.54 0.566 2.19 0.531 8.47 26.08 1143 -- --
127.06 0.525 11.6 0.55 0.335 -1.87 0.738 -- 0.668 8.58 23.52 1082 -- --
125.48 0.522 11.6 0.198 0.346 -1.51 -- 2.24 0.539 7.98 26 1071 -- --
128.47 0.528 11.6 0.575 0.344 -1.86 -- -- 0.667 7.72 23.5 1084 -- --
131.13 0.533 11.6 0.181 -- -1.51 -- 2.27 0.539 -- 25.7 1213 -- --
171.81 0.615 11.5 1.1 0.306 -- -0.644 -- 0.993 4.53 -- -- -- --
172.15 0.614 11.5 1.1 0.33 -- -- -- 0.997 5.86 -- -- -- --
134.04 0.539 11.6 0.551 -- -1.9 -- -- 0.657 -- 23.48 1202 -- --
136.13 0.543 11.6 -- 0.343 -2.18 -- -- 0.607 7.84 23.4 1111 -- --
177.78 0.623 11.5 1.11 -- -- -- -- 1 -- -- -- -- --
204.25 0.669 11.5 -- 0.347 -- -- -- 0.874 5.71 -- -- -- --
141.37 0.554 11.6 -- -- -2.21 -- -- 0.57 -- 23.29 1218 -- --
210.49 0.677 11.5 -- -- -- -- -- 0.881 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.02 temperature 25.0 1440 < th dose dependent rect. 20 1
25 123.21 temperature 15.0 270 > th dose dependent rect. 17 21
28 123.47 radiation 20.0 14400 < th dose independent rect. 21 9
45 124.11 temperature 25.0 1440 < th dose dependent sin 15 NA
50 124.17 humidity 80.0 43200 < th dose dependent rect. 8 1
53 124.25 temperature 25.0 4320 > th dose independent rect. 10 2
74 124.65 temperature 25.0 4320 < th dose independent rect. 10 2
91 125.02 temperature 15.0 1440 > th dose dependent rect. 20 1
98 125.10 temperature 25.0 4320 < th dose independent rect. 16 2
99 125.11 temperature 25.0 4320 > th dose independent rect. 16 2
110 125.25 humidity 70.0 43200 < th dose independent rect. 3 7
116 125.32 radiation 1.0 14400 > th dose independent rect. 9 4
117 125.35 humidity 70.0 43200 > th dose independent rect. 4 6
122 125.38 radiation 1.0 14400 > th dose independent rect. 8 6
133 125.53 humidity 60.0 43200 < th dose independent rect. 18 19
139 125.60 radiation 1.0 43200 < th dose independent rect. 18 3
140 125.62 radiation 1.0 43200 < th dose independent rect. 18 1
142 125.63 radiation 1.0 43200 < th dose independent rect. 18 5
171 125.81 humidity 80.0 43200 < th dose independent rect. 17 1
175 125.82 humidity 60.0 43200 > th dose independent rect. 18 19
180 125.86 humidity 60.0 43200 < th dose independent rect. 22 15
191 125.89 humidity 60.0 43200 < th dose dependent rect. 12 2
194 125.91 humidity 70.0 43200 < th dose dependent rect. 18 1
201 125.95 radiation 1.0 14400 < th dose independent rect. 8 6
205 125.98 temperature 25.0 1440 < th dose independent rect. 7 11
209 126.00 humidity 70.0 43200 > th dose independent rect. 19 14
216 126.02 humidity 60.0 43200 > th dose independent rect. 23 14
219 126.05 humidity 70.0 43200 > th dose independent rect. 8 1
220 126.05 humidity 70.0 43200 < th dose independent rect. 7 3
224 126.06 radiation 30.0 43200 < th dose independent rect. 17 14
226 126.07 humidity 60.0 43200 < th dose independent rect. 18 2
231 126.08 humidity 80.0 43200 > th dose independent rect. 17 1
238 126.12 humidity 70.0 43200 < th dose independent rect. 20 14
240 126.13 temperature 25.0 1440 > th dose independent rect. 7 11
256 126.19 temperature 25.0 720 < th dose dependent rect. 3 18
259 126.21 radiation 1.0 43200 > th dose independent rect. 13 2
262 126.22 precipitation 0.1 43200 > th dose independent rect. 9 1
264 126.22 precipitation 0.1 43200 > th dose dependent rect. 9 1
266 126.23 radiation 1.0 43200 < th dose independent rect. 13 2
267 126.23 radiation 1.0 43200 < th dose dependent rect. 13 2
270 126.24 humidity 60.0 43200 > th dose independent rect. 19 1
277 126.27 precipitation 0.1 43200 < th dose independent rect. 9 1
280 126.27 precipitation 0.1 43200 < th dose dependent rect. 9 1
356 126.47 humidity 70.0 43200 < th dose dependent rect. 1 11
367 126.50 humidity 60.0 43200 < th dose independent sin 7 NA
372 126.51 humidity 70.0 43200 < th dose dependent rect. 23 13
373 126.51 humidity 70.0 43200 < th dose dependent rect. 19 17
390 126.56 humidity 60.0 43200 > th dose independent rect. 11 20
393 126.57 radiation 30.0 14400 < th dose independent rect. 23 8
399 126.59 humidity 60.0 43200 < th dose independent sin 15 NA
420 126.65 humidity 60.0 43200 < th dose independent rect. 12 19
426 126.66 humidity 60.0 43200 > th dose independent sin 15 NA
433 126.67 temperature 25.0 4320 > th dose independent rect. 10 9
440 126.67 humidity 60.0 43200 < th dose dependent rect. 16 22
444 126.69 humidity 60.0 43200 < th dose independent rect. 16 10
493 126.76 humidity 60.0 43200 > th dose independent sin 5 NA
550 126.84 humidity 60.0 43200 > th dose independent no NA NA
556 126.84 humidity 60.0 43200 > th dose independent rect. 3 23
580 126.88 radiation 1.0 14400 < th dose dependent rect. 9 4
584 126.89 humidity 60.0 43200 > th dose independent rect. 17 4
585 126.89 humidity 60.0 43200 < th dose independent rect. 17 7
587 126.89 humidity 60.0 43200 > th dose independent rect. 16 10
601 126.90 humidity 60.0 43200 < th dose dependent rect. 11 19
608 126.91 humidity 60.0 43200 > th dose independent rect. 23 23
636 126.94 humidity 60.0 43200 < th dose dependent rect. 11 14
640 126.95 radiation 30.0 43200 < th dose independent rect. 4 3
659 126.96 humidity 60.0 43200 < th dose dependent rect. 11 9
661 126.96 humidity 60.0 43200 < th dose dependent rect. 11 12
667 126.97 temperature 25.0 1440 < th dose independent sin 23 NA
678 126.97 radiation 1.0 14400 < th dose dependent rect. 8 6
683 126.98 humidity 60.0 43200 > th dose independent rect. 17 7
695 126.99 humidity 60.0 43200 < th dose independent rect. 8 23
717 127.02 humidity 60.0 43200 < th dose independent no NA NA
718 127.02 radiation 30.0 43200 < th dose independent rect. 2 5
738 127.03 humidity 60.0 43200 < th dose dependent rect. 11 23
744 127.04 temperature 25.0 1440 < th dose independent rect. 7 15
749 127.04 humidity 60.0 43200 < th dose independent rect. 3 23
759 127.05 radiation 1.0 43200 < th dose dependent rect. 4 1
793 127.07 humidity 60.0 43200 < th dose dependent rect. 9 17
821 127.09 humidity 60.0 43200 < th dose independent rect. 24 23
825 127.09 humidity 60.0 43200 < th dose dependent rect. 9 11
840 127.10 radiation 1.0 43200 < th dose dependent rect. 18 11
846 127.11 temperature 25.0 1440 > th dose independent sin 23 NA
847 127.11 radiation 1.0 43200 > th dose independent rect. 18 1
912 127.15 radiation 30.0 43200 < th dose independent rect. 10 1
921 127.16 humidity 60.0 43200 < th dose dependent sin 21 NA
937 127.17 humidity 60.0 43200 < th dose dependent rect. 24 20
980 127.19 humidity 60.0 43200 < th dose dependent rect. 6 14
987 127.19 humidity 60.0 43200 < th dose dependent rect. 5 21