Os12g0281300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pi-ta protein.
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Os12g0281300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pi-ta protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.13 | 0.367 | 7.77 | 0.552 | 0.757 | -1.19 | 0.485 | 1.59 | 0.628 | 8.53 | 25.51 | 488 | -- | -- |
| 63.63 | 0.372 | 7.72 | 0.834 | 0.672 | -1.34 | 0.673 | -- | 0.744 | 8.65 | 23.63 | 477 | -- | -- |
| 61.8 | 0.366 | 7.78 | 0.526 | 0.76 | -1.18 | -- | 1.8 | 0.62 | 8.57 | 25.43 | 513 | -- | -- |
| 65.4 | 0.377 | 7.73 | 0.834 | 0.715 | -1.44 | -- | -- | 0.736 | 8.62 | 23.24 | 508 | -- | -- |
| 83.43 | 0.428 | 7.77 | 0.764 | -- | -1.13 | -- | 1.06 | 0.693 | -- | 25.43 | 513 | -- | -- |
| 89.7 | 0.444 | 7.68 | 1.17 | 0.588 | -- | 0.824 | -- | 0.967 | 8.77 | -- | -- | -- | -- |
| 91.95 | 0.449 | 7.68 | 1.2 | 0.585 | -- | -- | -- | 0.968 | 8.82 | -- | -- | -- | -- |
| 85.47 | 0.432 | 7.75 | 0.927 | -- | -1.2 | -- | -- | 0.729 | -- | 25.43 | 513 | -- | -- |
| 71.61 | 0.394 | 7.77 | -- | 0.727 | -1.59 | -- | -- | 0.626 | 8.3 | 21.84 | 7821 | -- | -- |
| 111.41 | 0.493 | 7.7 | 1.2 | -- | -- | -- | -- | 0.972 | -- | -- | -- | -- | -- |
| 129.68 | 0.533 | 7.71 | -- | 0.588 | -- | -- | -- | 0.834 | 8.67 | -- | -- | -- | -- |
| 88.85 | 0.439 | 7.79 | -- | -- | -1.92 | -- | -- | 0.575 | -- | 21.6 | 7541 | -- | -- |
| 149.19 | 0.57 | 7.73 | -- | -- | -- | -- | -- | 0.839 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 2 | 59.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 3 | 59.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 17 |
| 4 | 59.40 | temperature | 25 | 270 | < th | dose dependent | sin | 22 | NA |
| 15 | 59.97 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 29 | 60.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 32 | 60.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 52 | 60.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 156 | 61.84 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 246 | 62.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 329 | 63.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 336 | 63.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 374 | 63.20 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 465 | 63.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 467 | 63.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 532 | 63.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 550 | 64.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 552 | 64.09 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 11 |
| 598 | 64.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 616 | 64.28 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 18 |
| 624 | 64.33 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 12 |
| 644 | 64.39 | temperature | 20 | 270 | > th | dose independent | sin | 22 | NA |
| 646 | 64.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 738 | 64.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 749 | 64.64 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 762 | 64.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 852 | 64.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 854 | 64.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 893 | 64.95 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 939 | 65.04 | temperature | 20 | 720 | > th | dose independent | sin | 2 | NA |