Os07g0186000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin h isoform 1.
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Os07g0186000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thioredoxin h isoform 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.74 | 0.417 | 16 | -1.25 | 0.457 | 0.871 | 0.755 | 0.177 | -0.234 | 15.2 | 29.7 | 2640 | -- | -- |
| 78.56 | 0.413 | 16 | -1.21 | 0.457 | 0.875 | 0.761 | -- | -0.203 | 15.2 | 29.53 | 2642 | -- | -- |
| 79.96 | 0.416 | 16 | -1.37 | 0.448 | 0.817 | -- | 0.765 | -0.181 | 15.5 | 29.35 | 2636 | -- | -- |
| 80.2 | 0.417 | 16 | -1.18 | 0.465 | 0.891 | -- | -- | -0.139 | 15.5 | 29.4 | 2639 | -- | -- |
| 91.04 | 0.444 | 16 | -1.42 | -- | 0.861 | -- | 0.972 | -0.163 | -- | 29 | 2655 | -- | -- |
| 113.99 | 0.501 | 16 | -1.49 | 0.561 | -- | 0.958 | -- | -0.187 | 14.7 | -- | -- | -- | -- |
| 117.15 | 0.507 | 16 | -1.46 | 0.566 | -- | -- | -- | -0.182 | 14.9 | -- | -- | -- | -- |
| 91.63 | 0.446 | 16 | -1.16 | -- | 0.965 | -- | -- | -0.115 | -- | 29.06 | 2655 | -- | -- |
| 114.65 | 0.499 | 16 | -- | 0.409 | 1.11 | -- | -- | 0.0267 | 15.7 | 28.62 | 2657 | -- | -- |
| 135.66 | 0.544 | 16 | -1.49 | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
| 173.5 | 0.616 | 15.9 | -- | 0.595 | -- | -- | -- | -0.0187 | 14.9 | -- | -- | -- | -- |
| 122.51 | 0.516 | 15.9 | -- | -- | 1.25 | -- | -- | 0.173 | -- | 27.4 | 2650 | -- | -- |
| 193.93 | 0.65 | 15.9 | -- | -- | -- | -- | -- | -0.0312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 3 | 78.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 6 | 78.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 7 | 78.51 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 18 | 78.55 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 22 | 78.59 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 28 | 78.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 29 | 78.84 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 34 | 79.36 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 35 | 79.36 | temperature | 30 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 49 | 79.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 50 | 79.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 63 | 79.44 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 66 | 79.48 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 80 | 79.50 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 84 | 79.53 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 133 | 79.58 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 182 | 79.66 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 185 | 79.68 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 199 | 79.69 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 11 |
| 224 | 79.73 | temperature | 25 | 14400 | > th | dose dependent | sin | 16 | NA |
| 229 | 79.73 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 256 | 79.75 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 280 | 79.78 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 288 | 79.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 325 | 79.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 341 | 79.85 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 350 | 79.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 411 | 79.90 | temperature | 10 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 464 | 79.96 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 467 | 79.97 | temperature | 25 | 14400 | > th | dose independent | sin | 7 | NA |
| 481 | 79.99 | temperature | 25 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 499 | 80.02 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 507 | 80.02 | temperature | 15 | 14400 | > th | dose dependent | rect. | 15 | 8 |
| 548 | 80.05 | temperature | 15 | 14400 | > th | dose dependent | rect. | 12 | 11 |
| 638 | 80.13 | temperature | 25 | 14400 | < th | dose independent | sin | 6 | NA |
| 676 | 80.15 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 831 | 80.27 | temperature | 15 | 14400 | > th | dose dependent | sin | 18 | NA |
| 885 | 80.30 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 916 | 80.32 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 933 | 80.32 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 936 | 80.33 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 959 | 80.34 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 980 | 80.35 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 990 | 80.36 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |