Os04g0530600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M).
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Os04g0530600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.35 | 0.489 | 11.9 | 1.88 | 0.952 | 3.4 | 2.08 | -1.71 | 0.177 | 12.2 | 7.214 | 841 | 18.6 | 16.3 |
| 109.59 | 0.488 | 11.9 | 2.07 | 0.863 | 3.51 | 1.53 | -- | 0.222 | 12.4 | 6.654 | 836 | 18.7 | 16.3 |
| 118.37 | 0.507 | 11.9 | 2.29 | 0.969 | 3.24 | -- | 1.12 | 0.299 | 11.4 | 7.754 | 849 | 18.9 | 16.1 |
| 119.54 | 0.509 | 11.9 | 2.15 | 0.699 | 3.62 | -- | -- | 0.221 | 12.4 | 5.454 | 839 | 18.8 | 16.2 |
| 118.89 | 0.508 | 11.9 | 2.3 | -- | 4.16 | -- | 1.55 | 0.3 | -- | 0.7606 | 824 | 19.2 | 16.3 |
| 182.15 | 0.633 | 11.8 | 2.66 | 2.51 | -- | 1.55 | -- | 0.671 | 10.6 | -- | -- | -- | -- |
| 191.92 | 0.649 | 11.8 | 2.72 | 2.5 | -- | -- | -- | 0.674 | 10.5 | -- | -- | -- | -- |
| 122.34 | 0.515 | 11.9 | 2.15 | -- | 4.19 | -- | -- | 0.259 | -- | 1.427 | 828 | 19.4 | 15.9 |
| 232.69 | 0.71 | 11.9 | -- | 0.077 | 4.74 | -- | -- | 0.0132 | 12.8 | 6.141 | 816 | 19.1 | 16.6 |
| 575.97 | 1.12 | 11.8 | 2.68 | -- | -- | -- | -- | 0.664 | -- | -- | -- | -- | -- |
| 387.39 | 0.921 | 11.8 | -- | 2.48 | -- | -- | -- | 0.371 | 10.4 | -- | -- | -- | -- |
| 230.37 | 0.707 | 12 | -- | -- | 4.87 | -- | -- | -0.133 | -- | 6.386 | 830 | 19.1 | 16.4 |
| 765.3 | 1.29 | 11.9 | -- | -- | -- | -- | -- | 0.366 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 2 | 115.08 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 6 | 116.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 14 | 118.39 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 18 | 118.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 22 | 118.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 50 | 120.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 62 | 120.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 68 | 120.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 90 | 121.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 108 | 121.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 162 | 122.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 214 | 123.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 254 | 124.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 300 | 124.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 375 | 125.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 377 | 125.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 445 | 126.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 453 | 126.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 526 | 127.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 557 | 127.91 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 9 |
| 607 | 128.34 | temperature | 15 | 10 | > th | dose dependent | sin | 4 | NA |
| 649 | 128.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 667 | 128.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 783 | 129.64 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 799 | 129.83 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 804 | 129.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 832 | 130.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 835 | 130.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 864 | 130.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 876 | 130.46 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 879 | 130.48 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 898 | 130.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 906 | 130.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 922 | 130.81 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 935 | 130.88 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 976 | 131.18 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |
| 984 | 131.23 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 8 |
| 986 | 131.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |