Os05g0200100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0200100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Thioredoxin domain 2 containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.4 | 0.207 | 13.8 | -0.129 | 0.277 | 0.25 | -0.156 | 1.26 | -0.356 | 23 | 74.12 | 5695 | -- | -- |
| 21.77 | 0.217 | 13.8 | -0.136 | 0.279 | 0.327 | -0.168 | -- | -0.318 | 23 | 67.5 | 5542 | -- | -- |
| 19.39 | 0.205 | 13.8 | -0.155 | 0.281 | 0.288 | -- | 1.29 | -0.347 | 23.2 | 69.07 | 6188 | -- | -- |
| 20.83 | 0.213 | 13.7 | -0.186 | 0.256 | 0.395 | -- | -- | -0.287 | 23.2 | 56 | 4112 | -- | -- |
| 24.04 | 0.228 | 13.8 | -0.0667 | -- | 0.359 | -- | 1.35 | -0.38 | -- | 75.63 | 6640 | -- | -- |
| 23.59 | 0.228 | 13.8 | -0.126 | 0.291 | -- | -0.108 | -- | -0.358 | 23.1 | -- | -- | -- | -- |
| 23.64 | 0.228 | 13.8 | -0.122 | 0.291 | -- | -- | -- | -0.358 | 23.2 | -- | -- | -- | -- |
| 24.93 | 0.233 | 13.7 | -0.159 | -- | 0.406 | -- | -- | -0.332 | -- | 85 | 952 | -- | -- |
| 20.9 | 0.213 | 13.7 | -- | 0.286 | 0.352 | -- | -- | -0.294 | 22.8 | 46.94 | 15565 | -- | -- |
| 28.94 | 0.251 | 13.8 | -0.115 | -- | -- | -- | -- | -0.356 | -- | -- | -- | -- | -- |
| 24.03 | 0.229 | 13.8 | -- | 0.29 | -- | -- | -- | -0.344 | 23.2 | -- | -- | -- | -- |
| 25.57 | 0.236 | 13.7 | -- | -- | 0.393 | -- | -- | -0.334 | -- | 87.33 | 937 | -- | -- |
| 29.29 | 0.253 | 13.8 | -- | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.55 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 6 | 18.57 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 16 | 18.61 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 18 | 18.61 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 26 | 18.64 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 39 | 18.66 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 10 |
| 49 | 18.67 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 50 | 18.68 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 60 | 18.69 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 63 | 18.70 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 17 |
| 72 | 18.71 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 82 | 18.73 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 111 | 18.76 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 137 | 18.79 | wind | 9.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 153 | 18.80 | wind | 1.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 206 | 18.86 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 236 | 18.89 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 244 | 18.90 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 288 | 18.94 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 300 | 18.95 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 317 | 18.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 325 | 18.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 326 | 18.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 333 | 18.98 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 352 | 18.99 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 353 | 18.99 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 368 | 18.99 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 17 |
| 371 | 19.00 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 372 | 19.00 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 391 | 19.01 | wind | 5.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 419 | 19.03 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 434 | 19.04 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 435 | 19.04 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 483 | 19.08 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 485 | 19.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 508 | 19.10 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 518 | 19.10 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 570 | 19.13 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 19 |
| 586 | 19.15 | wind | 3.0 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 599 | 19.16 | wind | 3.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 603 | 19.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 611 | 19.16 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 16 | 21 |
| 688 | 19.22 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 787 | 19.28 | wind | 1.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 792 | 19.28 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 807 | 19.29 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 824 | 19.30 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 844 | 19.31 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 854 | 19.31 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 876 | 19.33 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 915 | 19.35 | wind | 1.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 917 | 19.35 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 970 | 19.38 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 986 | 19.39 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |