Os01g0339900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0339900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Thioredoxin domain 2 containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.67 | 0.288 | 11.8 | -0.144 | 0.807 | 0.17 | 0.0426 | -0.732 | 0.0995 | 17.4 | 20.5 | 106 | -- | -- |
| 40 | 0.295 | 11.8 | -0.0199 | 0.805 | 0.233 | -0.222 | -- | 0.129 | 17.3 | 19.6 | 119 | -- | -- |
| 37.68 | 0.286 | 11.8 | -0.143 | 0.807 | 0.17 | -- | -0.724 | 0.1 | 17.4 | 20.51 | 105 | -- | -- |
| 40.07 | 0.295 | 11.8 | -0.0407 | 0.794 | 0.269 | -- | -- | 0.126 | 17.4 | 19.4 | 144 | -- | -- |
| 60.6 | 0.363 | 11.8 | -0.167 | -- | 0.483 | -- | -0.312 | 0.161 | -- | 26.5 | 310 | -- | -- |
| 41.97 | 0.304 | 11.8 | 0.0435 | 0.827 | -- | -0.286 | -- | 0.171 | 17.2 | -- | -- | -- | -- |
| 42.17 | 0.304 | 11.8 | 0.0432 | 0.826 | -- | -- | -- | 0.17 | 17.2 | -- | -- | -- | -- |
| 58.89 | 0.357 | 11.8 | -0.119 | -- | 0.538 | -- | -- | 0.0172 | -- | 26.52 | 334 | -- | -- |
| 40.1 | 0.295 | 11.8 | -- | 0.796 | 0.269 | -- | -- | 0.134 | 17.4 | 19.45 | 143 | -- | -- |
| 77.84 | 0.412 | 11.8 | 0.0144 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 42.22 | 0.304 | 11.8 | -- | 0.825 | -- | -- | -- | 0.165 | 17.2 | -- | -- | -- | -- |
| 59.26 | 0.359 | 11.8 | -- | -- | 0.526 | -- | -- | 0.0295 | -- | 26.6 | 336 | -- | -- |
| 77.85 | 0.412 | 11.8 | -- | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 35.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 35.18 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 20 | 5 |
| 7 | 35.56 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 9 | 35.59 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 10 | 35.59 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 11 | 35.59 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 21 | 35.80 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 24 | 35.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 38 | 36.10 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 66 | 36.51 | temperature | 20.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 74 | 36.57 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 84 | 36.66 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 17 |
| 85 | 36.67 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 97 | 36.71 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 100 | 36.72 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 104 | 36.73 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 112 | 36.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 115 | 36.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 138 | 36.89 | temperature | 20.0 | 270 | < th | dose independent | sin | 12 | NA |
| 142 | 36.92 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 146 | 36.95 | wind | 1.0 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 147 | 36.96 | wind | 1.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 148 | 36.96 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 150 | 36.97 | temperature | 20.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 151 | 36.98 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 157 | 36.99 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 162 | 37.00 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 167 | 37.02 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 171 | 37.03 | wind | 1.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 175 | 37.03 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 187 | 37.06 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 16 |
| 188 | 37.07 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 191 | 37.07 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 210 | 37.10 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 211 | 37.10 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 223 | 37.13 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 240 | 37.16 | wind | 1.0 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 262 | 37.21 | wind | 5.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 263 | 37.21 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 273 | 37.23 | wind | 1.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 283 | 37.26 | wind | 1.0 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 286 | 37.26 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 291 | 37.27 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 22 |
| 296 | 37.28 | wind | 5.0 | 720 | < th | dose independent | rect. | 15 | 17 |
| 299 | 37.28 | wind | 1.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 302 | 37.29 | wind | 1.0 | 43200 | > th | dose independent | no | NA | NA |
| 303 | 37.29 | wind | 1.0 | 43200 | < th | dose independent | no | NA | NA |
| 308 | 37.29 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 315 | 37.31 | wind | 1.0 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 316 | 37.31 | wind | 1.0 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 330 | 37.35 | wind | 5.0 | 720 | < th | dose independent | sin | 13 | NA |
| 336 | 37.36 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 18 |
| 353 | 37.38 | wind | 3.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 359 | 37.39 | wind | 1.0 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 377 | 37.43 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 18 | 13 |
| 401 | 37.47 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 20 | 11 |
| 402 | 37.47 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 431 | 37.52 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 464 | 37.56 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 489 | 37.59 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 490 | 37.59 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 11 |
| 520 | 37.61 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 536 | 37.64 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 537 | 37.64 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 5 |
| 559 | 37.68 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 574 | 37.71 | temperature | 20.0 | 10 | < th | dose independent | sin | 10 | NA |
| 578 | 37.71 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 18 | 15 |
| 590 | 37.73 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 596 | 37.74 | temperature | 20.0 | 270 | > th | dose independent | sin | 8 | NA |
| 613 | 37.75 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 21 |
| 614 | 37.75 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 615 | 37.76 | wind | 1.0 | 270 | > th | dose independent | sin | 9 | NA |
| 622 | 37.77 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 624 | 37.77 | wind | 5.0 | 720 | < th | dose independent | rect. | 13 | 14 |
| 627 | 37.77 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 643 | 37.79 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 670 | 37.81 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 707 | 37.84 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 712 | 37.85 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 14 |
| 744 | 37.86 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 759 | 37.87 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 773 | 37.89 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 2 |
| 790 | 37.90 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 810 | 37.92 | atmosphere | 1000.0 | 30 | > th | dose dependent | sin | 9 | NA |
| 829 | 37.94 | temperature | 20.0 | 90 | > th | dose independent | rect. | 22 | 23 |
| 841 | 37.96 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 23 | 2 |
| 852 | 37.97 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 21 | 4 |
| 864 | 37.97 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 940 | 38.02 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 976 | 38.04 | atmosphere | 1005.0 | 270 | > th | dose independent | sin | 11 | NA |
| 986 | 38.04 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |