BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0225100 Os06g0225100|AK071845
(404 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0225100 Mitochodrial transcription termination factor-... 730 0.0
Os06g0224700 Mitochodrial transcription termination factor-... 300 1e-81
Os06g0225200 Mitochodrial transcription termination factor-... 290 2e-78
Os06g0224600 Mitochodrial transcription termination factor-... 289 3e-78
Os06g0224650 Mitochodrial transcription termination factor-... 286 3e-77
Os11g0206200 Mitochodrial transcription termination factor-... 270 2e-72
Os11g0206600 Mitochodrial transcription termination factor-... 269 4e-72
Os06g0224400 Mitochodrial transcription termination factor-... 261 6e-70
Os02g0749900 Mitochodrial transcription termination factor-... 259 3e-69
Os06g0224900 Mitochodrial transcription termination factor-... 249 3e-66
Os11g0246100 Mitochodrial transcription termination factor-... 241 1e-63
Os02g0749800 Mitochodrial transcription termination factor-... 165 4e-41
Os11g0206300 Mitochodrial transcription termination factor-... 160 1e-39
Os06g0224500 Mitochodrial transcription termination factor-... 157 1e-38
Os08g0528700 Mitochodrial transcription termination factor-... 151 1e-36
Os04g0637500 Mitochodrial transcription termination factor-... 134 1e-31
Os07g0423000 Mitochodrial transcription termination factor-... 129 5e-30
Os11g0206501 115 5e-26
Os05g0403400 Mitochodrial transcription termination factor-... 97 2e-20
Os05g0403600 Mitochodrial transcription termination factor-... 83 5e-16
Os05g0413000 Mitochodrial transcription termination factor-... 78 1e-14
>Os06g0225100 Mitochodrial transcription termination factor-related family
protein
Length = 404
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/391 (93%), Positives = 365/391 (93%)
Query: 14 PPRATASTLLSLRHHGLFSLTRFXXXXXXXXXXGHFAVEEYLVATCHLTPDQATKASKSI 73
PPRATASTLLSLRHHGLFSLTRF GHFAVEEYLVATCHLTPDQATKASKSI
Sbjct: 14 PPRATASTLLSLRHHGLFSLTRFSAAAAAAKSAGHFAVEEYLVATCHLTPDQATKASKSI 73
Query: 74 SHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPRLLCAEVDRTLAPRLAELAGLGLSPS 133
SHLKSPSRPDAVVAF YDPRLLCAEVDRTLAPRLAELAGLGLSPS
Sbjct: 74 SHLKSPSRPDAVVAFLAGLGLSAADIAAAVAYDPRLLCAEVDRTLAPRLAELAGLGLSPS 133
Query: 134 QIARLVLVDPARFRRPTVISKLQYYVPLFGSFETLLQALKNNSYLLSSDLEKVVKPNVAL 193
QIARLVLVDPARFRRPTVISKLQYYVPLFGSFETLLQALKNNSYLLSSDLEKVVKPNVAL
Sbjct: 134 QIARLVLVDPARFRRPTVISKLQYYVPLFGSFETLLQALKNNSYLLSSDLEKVVKPNVAL 193
Query: 194 LRECGLGACDIAKLCIPLPRLLTTSPERVRDMVAQAENVGVRRGSKMFRHAILAVAYISE 253
LRECGLGACDIAKLCIPLPRLLTTSPERVRDMVAQAENVGVRRGSKMFRHAILAVAYISE
Sbjct: 194 LRECGLGACDIAKLCIPLPRLLTTSPERVRDMVAQAENVGVRRGSKMFRHAILAVAYISE 253
Query: 254 EKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRSSEDKLSRVSEFLISEVGLEPAYIAYR 313
EKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRSSEDKLSRVSEFLISEVGLEPAYIAYR
Sbjct: 254 EKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRSSEDKLSRVSEFLISEVGLEPAYIAYR 313
Query: 314 PAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSYYSAVQVTEEVFVEKYISPYEDTAPHL 373
PAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSYYSAVQVTEEVFVEKYISPYEDTAPHL
Sbjct: 314 PAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSYYSAVQVTEEVFVEKYISPYEDTAPHL 373
Query: 374 AEDYAAVSSVKIPTRFRLKGPKTGHASAQTA 404
AEDYAAVSSVKIPTRFRLKGPKTGHASAQTA
Sbjct: 374 AEDYAAVSSVKIPTRFRLKGPKTGHASAQTA 404
>Os06g0224700 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 300 bits (769), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/337 (47%), Positives = 222/337 (65%), Gaps = 4/337 (1%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXX-XXXXXXXXYDP 107
FAV+EYLVATC LT QA KAS+ +S+L+SPS PDAV+AF DP
Sbjct: 46 FAVDEYLVATCGLTRAQAAKASEKLSNLRSPSNPDAVLAFLSDLGLSRPDGIAAAVAADP 105
Query: 108 RLLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFET 167
RLLCA+V +LA R+ EL GLGLS SQIARL+ + FR ++ ++L ++ P+FGSFE
Sbjct: 106 RLLCADVGSSLARRVDELGGLGLSRSQIARLLPLAGRCFRSSSLATRLAFWHPVFGSFEN 165
Query: 168 LLQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPL--PRLLTTSPERVRDM 225
+L+ALK N+ LL SDL+KV KPN+A L +CG+ A D+ + + L RL T +P ++D
Sbjct: 166 ILKALKMNAALLGSDLDKVAKPNLAFLAQCGINASDVTRTTLSLYSCRLFTVNPRFLQDA 225
Query: 226 VAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVL 285
VA+ E +GV RG + F + VA++S E IA+KMQ L+ L +S + + V + P VL
Sbjct: 226 VARVEELGVARGWRTFHRVLSTVAFLSRETIASKMQ-LLDDLGFSQDDFLVIVRRAPQVL 284
Query: 286 RSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDK 345
R S+ ++ R EFLI +VGLE +YIA RP +L YSLERRL+PRHC+LK LK GL+ D
Sbjct: 285 RLSDGRIRRSVEFLIRDVGLEQSYIAQRPTLLAYSLERRLLPRHCLLKVLKAKGLLNCDL 344
Query: 346 SYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSS 382
SYY ++EE FV++++ P++D LA+ Y + S
Sbjct: 345 SYYCIAAMSEEKFVQRFVDPFKDKIQGLADAYTSSCS 381
>Os06g0225200 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/333 (47%), Positives = 221/333 (66%), Gaps = 6/333 (1%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPR 108
FAVE+YLVAT LT QA KASK +SHL+SPS+PDAV+AF DPR
Sbjct: 49 FAVEDYLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPR 108
Query: 109 LLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETL 168
LCA+V+ LA R+ EL GLGLS SQIARLV + FR +V + L +++ + GSF+ +
Sbjct: 109 FLCADVESNLARRVDELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKI 168
Query: 169 LQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPL--PRLLTTSPERVRDMV 226
L+AL+ NS LL SDLEKVVKPN+ LL++CG+ D A PL RL T +P +RD V
Sbjct: 169 LKALRMNSSLLGSDLEKVVKPNLELLKQCGMS--DFAT-SFPLYTSRLFTANPIYLRDAV 225
Query: 227 AQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLR 286
A+ E +G+ R S+MFRH ++AVA+ S+E +A K+Q +M+ L +S E + + K P ++
Sbjct: 226 ARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQ-VMEELGFSRDELLMIIRKAPQLVA 284
Query: 287 SSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKS 346
SSE+K+ + +EFL +VGLE YIA+RP + YSLERRL+PRH +LK L+ GL++ +
Sbjct: 285 SSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSLERRLLPRHHLLKVLRMKGLLDCELD 344
Query: 347 YYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAA 379
YY+ ++E FV K++ PY+ P LA+ Y +
Sbjct: 345 YYNTAAMSERKFVRKFVDPYKCHIPGLADAYTS 377
>Os06g0224600 Mitochodrial transcription termination factor-related family
protein
Length = 389
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/338 (44%), Positives = 224/338 (66%), Gaps = 2/338 (0%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPR 108
FA E+YLVA C LT QA +AS+ ISHL+SPS+PDAV+AF DPR
Sbjct: 43 FAAEDYLVAACGLTRAQAARASERISHLRSPSKPDAVLAFLAGLGIPRPDIATAVAADPR 102
Query: 109 LLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETL 168
LLCA V+ LA R+AEL LG+ SQIARLV + FR ++ + L +++P+FGS +++
Sbjct: 103 LLCAGVEGNLAKRVAELGDLGIPRSQIARLVPLAKIPFRSSSLATNLAFWLPVFGSLDSI 162
Query: 169 LQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIA-KLCIPLPRLLTTSPERVRDMVA 227
L+AL+ NS LLS++L+KVVKPN+A L++CG+ A D+A + RL T++P ++RD VA
Sbjct: 163 LRALRKNSSLLSANLDKVVKPNLAFLKQCGIDARDVASNPNLYSSRLFTSNPMKLRDAVA 222
Query: 228 QAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRS 287
+ E +G+ RGS++F ++AVA++S+E +A K + L++ L +S + + K+P L +
Sbjct: 223 RVEELGMVRGSRVFHRGLVAVAFLSKEAVATKTRLLVE-LGFSQDDVSVIFRKMPSFLTA 281
Query: 288 SEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSY 347
SE ++ R FL +VGLE YIA RP +L YSLERRL+PR+ +LK L+ GL++ Y
Sbjct: 282 SEKRIRRAVGFLKGDVGLEERYIARRPVLLLYSLERRLLPRYYLLKVLRTKGLLDCKLCY 341
Query: 348 YSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSSVKI 385
YS + E+ F+E+++ PYED LA+ Y ++ S K+
Sbjct: 342 YSTAALGEKKFIERFVHPYEDHIAGLADAYGSICSGKV 379
>Os06g0224650 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 286 bits (731), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 215/335 (64%), Gaps = 2/335 (0%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPR 108
FAVE+YLVA C LT +A KAS ISHL SPS PDAV+AF DPR
Sbjct: 46 FAVEDYLVAGCGLTRAEAAKASAKISHLSSPSNPDAVIAFLSDLGLPRPQIAAAIAADPR 105
Query: 109 LLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETL 168
LLCA+V++ LA R+ EL LG S SQIARL+ + FR ++ + L +++P+FGSF+ +
Sbjct: 106 LLCADVEKNLAKRVGELGDLGFSRSQIARLLPLAGWCFRSSSLATNLAFWLPVFGSFDKI 165
Query: 169 LQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKL-CIPLPRLLTTSPERVRDMVA 227
L+AL+ N LLS ++K KP +A L +CG+ A D+A+ + RLLT +PE +RD VA
Sbjct: 166 LKALRMNKNLLSPGVQKSAKPILAFLEQCGINASDVARSSTMYSSRLLTANPEYLRDAVA 225
Query: 228 QAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRS 287
+ E +G+ R S+ F ++AVA +S+E A K++ LM+ L +S + + + KLP L
Sbjct: 226 RVEELGLDRSSRRFHRGLVAVALVSKETAARKIR-LMEELGFSQDDLLVIMRKLPNFLAL 284
Query: 288 SEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSY 347
SE K+ R EFL +VGLE YI RP +L+YSLERRL+PRHC+LK L+ GL+ S+ Y
Sbjct: 285 SEKKIRRAVEFLKRDVGLEGRYIVQRPVLLSYSLERRLLPRHCLLKVLRTKGLLNSELDY 344
Query: 348 YSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSS 382
YS ++E+ FV K++ PYED LA+ YA+ S
Sbjct: 345 YSTAALSEKKFVNKFVHPYEDHIAGLADAYASGCS 379
>Os11g0206200 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/342 (43%), Positives = 213/342 (62%), Gaps = 5/342 (1%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPR 108
F+VEEYLV TC LT QA KASK +SHL+SP++PDAV+A DP+
Sbjct: 61 FSVEEYLVDTCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSRADLAAVVASDPQ 120
Query: 109 LLCAEVDRTLAPRLAELAG-LGLSPSQIARLVLVDPAR-FRRPTVISKLQYYVPLFGSFE 166
LLCA D +A R+A L +GLS QI +L A+ V S+L++++P GSFE
Sbjct: 121 LLCARAD-NIARRIASLRDRVGLSDPQIGSFLLAGGAKGIHACDVASRLEFWIPFLGSFE 179
Query: 167 TLLQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRDMV 226
TLL+ LK N+ L+ SDLEKV+KPN+ALL+ECGL CDIAK+ PR+ T++P++V V
Sbjct: 180 TLLRILKGNNVLVLSDLEKVIKPNIALLQECGLTVCDIAKMARFAPRMFTSNPKQVEGFV 239
Query: 227 AQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLR 286
+A+ +GV R S F++ + A ISE A+M++L ++L S + R AV KLP +L
Sbjct: 240 RRADELGVPRTSGQFKYMVGIFANISEGSATARMEYLSRSLGCSMDKLRSAVQKLPQILG 299
Query: 287 SSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGL--IESD 344
SE L EFL+ +V LEP Y+ P + TYSLE+RL+ RH +++ L GL ++ D
Sbjct: 300 LSETNLGSKIEFLVGKVRLEPEYLLKTPKLFTYSLEKRLVARHYIVQVLAAKGLKGLKKD 359
Query: 345 KSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSSVKIP 386
+ S VQ+ E FV+ +I +E+ P L++ YAA+ + K+P
Sbjct: 360 VPFCSYVQLGESCFVKNFIDQHENVVPGLSDAYAALRAGKVP 401
>Os11g0206600 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 213/340 (62%), Gaps = 3/340 (0%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPR 108
F+VEEYLVATC LT QA KASK +SHL+SP++PDAV+A DP
Sbjct: 49 FSVEEYLVATCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSRADLAAVVAADPM 108
Query: 109 LLCAEVDRTLAPRLAELAG-LGLSPSQIARLVLVDPAR-FRRPTVISKLQYYVPLFGSFE 166
LLCA R +A RL L +GLS + +AR +L A R+ + +L++++ GSF+
Sbjct: 109 LLCARA-RNVARRLHSLRDRVGLSDADVARFLLAGGAMGLRKCDIAPRLEFWIGFVGSFD 167
Query: 167 TLLQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRDMV 226
LL ALK N+ +L SDL+KVVKPN+ALL+ECGL C+IAKL +L+ SPERV+ V
Sbjct: 168 KLLPALKGNNGILMSDLDKVVKPNIALLQECGLSVCEIAKLSTLKWTVLSLSPERVKASV 227
Query: 227 AQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLR 286
E + V R S F+H + + +ISE+ +A KM+FL TL S+ + R AV P +
Sbjct: 228 LCVEKLVVPRSSDRFKHVLKSACWISEDMLAMKMEFLRSTLGCSEDKLRAAVCISPHIFY 287
Query: 287 SSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKS 346
S+ L R +FLISEVGLE +I RP +L YSLE+R++PRH V+K L+ GL++
Sbjct: 288 LSDKNLCRKIDFLISEVGLEREFIVERPWVLGYSLEKRMVPRHSVMKILRTMGLMKDAVD 347
Query: 347 YYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSSVKIP 386
+ S++ +E+ FV +YI PY+ AP LA+ YAA + K+P
Sbjct: 348 FSSSLVYSEKKFVARYIDPYKQAAPTLADSYAAACAGKMP 387
>Os06g0224400 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 261 bits (667), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 208/329 (63%), Gaps = 2/329 (0%)
Query: 51 VEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPRLL 110
VE+YLV +C LT +A KAS +SHL+SPS PDAV+AF DP +
Sbjct: 46 VEDYLVDSCGLTRARAKKASGKLSHLRSPSNPDAVLAFLSGLGLSRPDIAAVVVNDPLFI 105
Query: 111 CAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETLLQ 170
CA VD+TLA R+AEL LGLS SQIARL+ V + FR ++ +L + + +FGSF+ L+
Sbjct: 106 CARVDKTLATRVAELTDLGLSRSQIARLIPVVRSLFRCKSLAPRLAFLLTVFGSFDRCLE 165
Query: 171 ALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRDMVAQAE 230
+K N +LSS++E V+KPN+A+L+ECG+ D R+++ + + + V A
Sbjct: 166 VIKTNYGVLSSNVEAVIKPNLAVLKECGISIADRPSYAFA-SRVISRPTKHLEEAVVLAN 224
Query: 231 NVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRSSED 290
G ++G+++F +A++ + +EK+A K++F K L WS + +AV +P +L E+
Sbjct: 225 EFGAKQGTRVFTNAVMIFGILGQEKLAKKLEFF-KKLGWSQDDLSLAVRSMPHILAMKEE 283
Query: 291 KLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSYYSA 350
++ R +FL +VGLE YIA RPA+ YS+ERRL+PRHC++ LK NGL++++ +Y+
Sbjct: 284 RMRRGMKFLTEDVGLEIPYIARRPALTMYSIERRLLPRHCLINVLKGNGLLKANYDFYNI 343
Query: 351 VQVTEEVFVEKYISPYEDTAPHLAEDYAA 379
++ + F+EK++ PY ++ P L + YA+
Sbjct: 344 SVISNDDFMEKFVQPYVESVPGLGDAYAS 372
>Os02g0749900 Mitochodrial transcription termination factor-related family
protein
Length = 382
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 206/341 (60%), Gaps = 6/341 (1%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVV---AFXXXXXXXXXXXXXXXXY 105
F E+ LVA C LT +A KASK + K PS DA + AF
Sbjct: 40 FVDEDALVAACGLTGAEALKASKRLQ--KVPSNLDAALTFLAFLADFRLSKDDIAAASSR 97
Query: 106 DPRLLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSF 165
PR L +VD TL ++A L +GLS +I RL+ + P P IS+L++Y+ GS+
Sbjct: 98 YPRFLHLKVDETLTSQVARLRDIGLSTPEIGRLITIAPCILSNPRTISRLEFYLSFLGSY 157
Query: 166 ETLLQALKNNSYLLS-SDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRD 224
+ AL+NNS LL +++E VKPN+A L +CGL CDIAK+ + R+L PE V++
Sbjct: 158 PRVHSALRNNSSLLRRNNIESEVKPNIAFLEQCGLTTCDIAKILMSGSRILIMQPEHVKE 217
Query: 225 MVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVV 284
+VA A+ G+ R S FR+A++AV IS +++AK+ FL + SDA+ IAVS+ P++
Sbjct: 218 IVACADKFGMPRESAGFRYALMAVTGISPVRVSAKLDFLRMVIGCSDAQLHIAVSRFPLI 277
Query: 285 LRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESD 344
L SE KLSR EFL +EVGLEP YI RPA+L YS+++RLMPR+ V+K L + GL++ D
Sbjct: 278 LTYSEVKLSRSLEFLKAEVGLEPQYIVLRPALLGYSIQKRLMPRYHVMKVLNEKGLLKKD 337
Query: 345 KSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSSVKI 385
+YS V++ EE F +K++ PY + P L + Y A K+
Sbjct: 338 TDFYSMVKIVEESFFKKFLLPYHRSVPGLEKAYLAAREGKM 378
>Os06g0224900 Mitochodrial transcription termination factor-related family
protein
Length = 378
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/331 (44%), Positives = 216/331 (65%), Gaps = 3/331 (0%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPR 108
FAVE+YLV TC LT DQA KA+K++S L+SPS+PDA VAF DPR
Sbjct: 44 FAVEDYLVTTCGLTGDQARKAAKTLSRLRSPSKPDAAVAFLSGLGLSRSGIAAAVAADPR 103
Query: 109 LLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETL 168
LLCA+V++ LA R+AEL LG+S SQIARL+ + FR ++ + L +++P+ GSFE +
Sbjct: 104 LLCADVEKNLAKRVAELGELGISRSQIARLIPLARQSFRSSSLATNLGFWLPVLGSFENV 163
Query: 169 LQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRDMVAQ 228
L ALK N +L SD+EKVVKPN+ALL++CG+ CD LP +L P V++ VA+
Sbjct: 164 LMALKANGAILGSDVEKVVKPNLALLQQCGIHVCDFPH--TRLPTVLCRPPNHVQEAVAR 221
Query: 229 AENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRSS 288
GV + S +FR+A++ AY ++EK+AAK+ L + WS+ + + + K PVV+ S
Sbjct: 222 IGEFGVPQYSPVFRNALVPFAYQNKEKLAAKIGVL-EMFGWSEDDLSMTMRKGPVVMNMS 280
Query: 289 EDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSYY 348
++L + EFL +V LE YIA RP M++YSLERRL+PRH +L++L GL++ + +Y
Sbjct: 281 VERLRKNVEFLTRDVKLETRYIARRPIMISYSLERRLLPRHRLLRFLSAKGLLDGELDFY 340
Query: 349 SAVQVTEEVFVEKYISPYEDTAPHLAEDYAA 379
SAV +TE+ F++K++ + + A YA+
Sbjct: 341 SAVALTEKKFLDKFVHSCKCSIADPANAYAS 371
>Os11g0246100 Mitochodrial transcription termination factor-related family
protein
Length = 417
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/349 (42%), Positives = 204/349 (58%), Gaps = 10/349 (2%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXX-------XXXXXXX 101
F+VE YL+ATC LT QA +AS +S L S S PDAV+A
Sbjct: 39 FSVEHYLIATCGLTAAQARRASPKLSRLNSSSNPDAVLALLSSSAAGLDSLSLSRADLAA 98
Query: 102 XXXYDPRLLCAEVDRTLAPRLAELAG-LGLSPSQIARLVLVDPARFRRPTVIS-KLQYYV 159
+PRLL A T+A R+A L G LS QI ++ A + +S KL ++V
Sbjct: 99 VVAAEPRLLRARPG-TIARRIASLRGRANLSAPQIRSFLMSGGAAHLASSDVSPKLAFWV 157
Query: 160 PLFGSFETLLQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSP 219
P GSF+ LL+ L+ + +L++D+++VV+PNVALL ECGLG CDI ++ LLT +P
Sbjct: 158 PFLGSFDMLLKILRRCNAILATDVDRVVRPNVALLGECGLGVCDIVQMTQTAAWLLTFNP 217
Query: 220 ERVRDMVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVS 279
ER++ +V +AE +GV S F+ A+ VA +E IAA+M+FL TL S + R A+S
Sbjct: 218 ERLKIVVRRAEELGVPTSSWAFKDAVCTVARNNEGTIAARMEFLRGTLGCSMDKLRSAIS 277
Query: 280 KLPVVLRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNG 339
+ P +L SE L EFL+++V LE YI RP MLT SL++RL PRH VL+ L + G
Sbjct: 278 RKPSILGFSEKTLRGKIEFLLTKVQLETEYILQRPVMLTLSLDKRLAPRHYVLQALVEKG 337
Query: 340 LIESDKSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSSVKIPTR 388
LI++D YYS V E FV +YI +ED P L + YAAV + K P +
Sbjct: 338 LIKNDVDYYSCVCFGNEHFVARYIDRHEDALPGLTDAYAAVHAGKSPAQ 386
>Os02g0749800 Mitochodrial transcription termination factor-related family
protein
Length = 168
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 114/166 (68%)
Query: 223 RDMVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLP 282
+D V +A +GV GS+MFRHA+ I ++KI AK+ L ++L WS E +AVSK P
Sbjct: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
Query: 283 VVLRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIE 342
+L +SE++L R +EFLI EVGL+P Y+A R +L YSLERRL+PRH V+K LK+ GLIE
Sbjct: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
Query: 343 SDKSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSSVKIPTR 388
D+ +++AV TEE F+EK++ P+E P LA+ Y + + K P +
Sbjct: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPVQ 166
>Os11g0206300 Mitochodrial transcription termination factor-related family
protein
Length = 458
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 146/256 (57%), Gaps = 7/256 (2%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPR 108
F+ E+YLVATC LT DQA KASK ISHL+S + PDAV+A DP
Sbjct: 46 FSAEDYLVATCGLTGDQALKASKKISHLRSAANPDAVLAVLSGVGLSRADLAAVVASDPH 105
Query: 109 LLCAEVDRTLAPRLAELAG-LGLSPSQIARLVLVDPAR-FRRPTVISKLQYYVP-LFGSF 165
LLCA D ++ R+ L +GLS QI R +L A R+ V +L++++P L GSF
Sbjct: 106 LLCARPD-NVSRRVTSLRDRVGLSDPQIGRFLLAGGAMAVRKCDVAERLEFWIPFLGGSF 164
Query: 166 ETLLQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRDM 225
ETLL+ L+ N+ ++ +D+EKV+KPN+AL +E GL DI K+ P L T +P+RV
Sbjct: 165 ETLLKMLRRNNAIVRADVEKVIKPNIALFQESGLTVRDIVKM--P-GWLFTFNPKRVEAA 221
Query: 226 VAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVL 285
V + +GV S ++ + I+E +A+M++L TL S + V K+P ++
Sbjct: 222 VERTGKLGVELASSRLKYMLSIAGNITEGNASARMKYLSSTLNCSMDKVEYMVGKMPTII 281
Query: 286 RSSEDKLSRVSEFLIS 301
SE+KL EFL S
Sbjct: 282 TLSEEKLRSKIEFLSS 297
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 211 LPRLLTTSPERVR---DMVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTL 267
+P ++T S E++R + ++ N V + M +A ISEEK+ +FL L
Sbjct: 277 MPTIITLSEEKLRSKIEFLSSTLNCCVDKIGHMVCKEPFILA-ISEEKLRINTKFLSSAL 335
Query: 268 KWSDAEARIAVSKLPVVLRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMP 327
S + V K+P +L S + L R EFL+++VGLEP YI +P + SLE+RLMP
Sbjct: 336 GCSIDNICVMVYKMPSILGLSVNNLCRKIEFLVTKVGLEPDYILSKPVLFACSLEKRLMP 395
Query: 328 RHCVLKYLKDNGLIESDKSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSSVKIP 386
RH +++ L GLI+ + + + + E+ FV +YI +++ P LA+ YA + S K+P
Sbjct: 396 RHYIVEVLLAKGLIK-NAGFLTYAILREKDFVARYIDQHKNAVPGLADAYATICSGKVP 453
>Os06g0224500 Mitochodrial transcription termination factor-related family
protein
Length = 330
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 162/344 (47%), Gaps = 89/344 (25%)
Query: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPR 108
FAVE+YLV +C LT +A K S +SHL+SPS+PDAV+A
Sbjct: 43 FAVEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAI-------------------- 82
Query: 109 LLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETL 168
L+GLGL+ IA V DP
Sbjct: 83 ----------------LSGLGLTRPDIAAAVASDP------------------------- 101
Query: 169 LQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPR-------------LL 215
LL + +++ + VA L GL IA+L IPL R L
Sbjct: 102 --------RLLCARVDRTLDARVAELGGIGLSRSQIARL-IPLARGGFRIKSLGSKLAFL 152
Query: 216 TTSPERVRDMVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEAR 275
T P +D E ++ G+++F A++ A +S+ KI K L K L WS +
Sbjct: 153 VTVPGGCQD-----ELWAIKPGTRLFALAVVKFAILSQGKITKK-SGLFKKLGWSQEDLS 206
Query: 276 IAVSKLPVVLRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYL 335
+A +P +L E +L + +FL +VGLE YIA RPA++ YS+ERRL+PRHC++ L
Sbjct: 207 LAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVL 266
Query: 336 KDNGLIESDKSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAA 379
K NGL++ + +YS ++ E F++K++ PY ++ P + + YA+
Sbjct: 267 KRNGLLKINYDFYSTALISNEKFLDKFVHPYVESVPGIGDAYAS 310
>Os08g0528700 Mitochodrial transcription termination factor-related family
protein
Length = 190
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 117/185 (63%)
Query: 202 CDIAKLCIPLPRLLTTSPERVRDMVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQ 261
CDI ++ R+LT SPER++ +V QAE + + S F++A+ AVA +E + A+M+
Sbjct: 3 CDIVQMSQTSARVLTFSPERLKVIVQQAEKLRMPGCSWAFKNAVGAVARSNEGIVNARME 62
Query: 262 FLMKTLKWSDAEARIAVSKLPVVLRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSL 321
FL +L S + R AV K P +L SE KL EFL+ +VGLEP YI RP +LTYSL
Sbjct: 63 FLSSSLGCSMEKLRSAVCKCPQILGLSESKLHSKIEFLVGKVGLEPDYILQRPVLLTYSL 122
Query: 322 ERRLMPRHCVLKYLKDNGLIESDKSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVS 381
E+RL+PRH V++ L GLI+ +Y V V+ E FV +YI +E+ P LA+ YAAV
Sbjct: 123 EKRLLPRHYVVEVLLVKGLIKKTVDFYGCVCVSNEDFVARYIDHHENAVPGLADAYAAVC 182
Query: 382 SVKIP 386
S K+P
Sbjct: 183 SGKLP 187
>Os04g0637500 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 166/334 (49%), Gaps = 7/334 (2%)
Query: 48 HFAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDP 107
HF V+ YLV+ C L+P A KA+ +HL S SRPDA +AF + P
Sbjct: 51 HFMVQ-YLVSKCGLSPAAAAKAAPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKP 109
Query: 108 RLLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFR---RPTVISKLQYYVPLFGS 164
LL ++VD TL P+ + LGL + +ARL + P ++ ++ +++ GS
Sbjct: 110 ELLLSDVDATLDPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFLGS 169
Query: 165 FETLLQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRD 224
+ L++ L ++LL ++ +++ N++ LR G+ I P L+T +P R +
Sbjct: 170 AKLLMKWLAK-TWLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQK 227
Query: 225 MVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVV 284
+V + E GV S M+ A A+ +SE AK ++ ++ E + P +
Sbjct: 228 LVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRAKKAAVVGAAGCTEEEFDAMFRRAPCL 287
Query: 285 LRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGL-IES 343
+ L R EFL++E G + +I P +LT SL +R+ PR V++ L+ G+ I
Sbjct: 288 VFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVGIGK 347
Query: 344 DKSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDY 377
+ S ++ E+ FVE+Y+ Y++ P L E Y
Sbjct: 348 KANLGSVMRYPEDKFVERYVLRYKEEVPELLELY 381
>Os07g0423000 Mitochodrial transcription termination factor-related family
protein
Length = 408
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 166/339 (48%), Gaps = 8/339 (2%)
Query: 53 EYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPRLLCA 112
+L TC L+ D+A A+ + L+S + A+VA +P LL
Sbjct: 70 HFLRNTCGLSEDEAAAAAARV-RLRSTKKAHAIVALFRGIGFSAADIARLVTSNPSLLSY 128
Query: 113 EVDRTLAPRLAELA-GLGLSPSQIARLVLVDPARFRRPTVISKLQ--YYV--PLFGSFET 167
D TL P++ LGL+ ++I RLVL +P R R ++ ++ Y + L GS +
Sbjct: 129 RADATLMPKIEFFRRELGLTDAEIRRLVLANPYRVLRYSLKRCIRPNYLILRDLLGSDKN 188
Query: 168 LLQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRDMVA 227
+ A+ ++ L+ D+ ++ P + +L++ G I KL PR L R + +A
Sbjct: 189 VTAAVLQSTDLIHGDVRGILLPKIKILQDYGATNDVIVKLVTTHPRALMHRASRFEESLA 248
Query: 228 QAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRS 287
+ +GVR S MF ++ A + K +M + +L W+ + A + P +
Sbjct: 249 AMKELGVRPSSGMFPYSFGLFARLHPRKWKGRMDNFL-SLGWTKEQVIEAFVRHPYCMSV 307
Query: 288 SEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSY 347
S DK+ + +FL ++ Y+A P +L++S ++R++PR VL L G+ D
Sbjct: 308 SNDKVKLIWQFLAKKLRWTTDYVARSPMVLSFSYDKRILPRCTVLNLLASRGIFNRDIK- 366
Query: 348 YSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSSVKIP 386
S + + E+ F EKY++PY+D P + E Y++V+ ++P
Sbjct: 367 TSHLVLGEKKFKEKYVTPYQDEIPEVLEAYSSVAESRVP 405
>Os11g0206501
Length = 266
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 110/203 (54%), Gaps = 8/203 (3%)
Query: 185 KVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRDMVAQAENVGVRRGSKMFRHA 244
+V+ P V LLR GA + +P P L ER++ V +A+ +GV R S FR
Sbjct: 49 RVLDPFVGLLR----GASQDRQAKLPHPHLRHRG-ERIKRYVHRADMLGVPRCSPAFR-- 101
Query: 245 ILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRSSEDKLSRVSEFLISEVG 304
+AV +E + A+M+FL +TL S IAV K P +L S D L R EFL++EVG
Sbjct: 102 -MAVCSTNEGSVTARMEFLSRTLGCSMDNILIAVGKRPTILGLSMDNLRRKIEFLVTEVG 160
Query: 305 LEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSYYSAVQVTEEVFVEKYIS 364
L+ I +L YSLE+R++PRH V++ L+ GL++ S Y + E FV +YI
Sbjct: 161 LKLECIVECLGILRYSLEKRMVPRHSVMEILRARGLMKKGASLYGLIMQGEADFVARYID 220
Query: 365 PYEDTAPHLAEDYAAVSSVKIPT 387
++D LA+ Y A K+P
Sbjct: 221 THKDMVHGLADAYNASCFGKMPV 243
>Os05g0403400 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 147/327 (44%), Gaps = 7/327 (2%)
Query: 54 YLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPRLLCAE 113
YLVA+ L+P A + S+ + +S + +AVV+ P LL
Sbjct: 60 YLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
Query: 114 VDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETLLQALK 173
D+ L P+L A LG+ PS ++R L+ AR ++ +++ + G+ L A+
Sbjct: 119 PDKILRPKLEYFASLGVVPSALSRAPLL--ARSLEKHLVPCVEFIRGVVGTDANLCAAIS 176
Query: 174 NNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRDMVAQAENVG 233
N + L D+ ++P V LR GL +I++L + LT SP+R+ + E +
Sbjct: 177 RNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEALE 236
Query: 234 VRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRSSEDKLS 293
+ F + A++ + +M M+ S +E A + P +L + +
Sbjct: 237 LPISHSRFVYGFWALSRLKRGAWEERMSVFMR-FGVSRSELLKAFREQPGILVFTAKTIQ 295
Query: 294 RVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIE---SDKSYYSA 350
R F ++ + PA + P +LT+SLE+ ++P+ VL L G I+ +
Sbjct: 296 RKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRP 355
Query: 351 VQVTEEVFVEKYISPYEDTAPHLAEDY 377
+Q + F E+++ YE+ P + + Y
Sbjct: 356 LQRSNISFFERFVRKYEEDVPDVVKAY 382
>Os05g0403600 Mitochodrial transcription termination factor-related family
protein
Length = 399
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 140/327 (42%), Gaps = 6/327 (1%)
Query: 54 YLVATCHLTPDQA--TKASKSISHLKSPSRPDAVVAFXXXXXXXXXXXXXXXXYDPRLLC 111
YLV +C L P A T A+ ++S + DAV P LL
Sbjct: 60 YLV-SCGLPPAVARHTAANTRGLRIRSTEKADAVRTLLRSYGFSDADVARIARSAPLLLT 118
Query: 112 AEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETLLQA 171
+ DR + P+L A +G PS+++ L+ AR ++ +Q+ + GS + + +
Sbjct: 119 VDPDRIIRPKLEFFATMGFQPSKLSTAPLL-LARSLEKHLVPTIQFLRSIIGSDDGIRRG 177
Query: 172 LKNNSYLLSSDLEKVVKPNVALLRECGL-GACDIAKLCIPLPRLLTTSPERVRDMVAQAE 230
L L+ ++P V L GL G D++K+ + +L SP R+ ++ +
Sbjct: 178 FSRIPRALLVSLDNCMRPAVEALHRHGLTGREDVSKVLVLQMGVLMLSPVRIGEIFEDLK 237
Query: 231 NVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRSSED 290
+G+ F ++ A+ + K+ L ++ S++E A K P L +++
Sbjct: 238 AMGMSITDGRFANSFRAMCSMRRATWLRKVA-LYRSFGLSESEVFEAFKKQPTALLGADE 296
Query: 291 KLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKSYYSA 350
+ + + F + LE + P ++ YS E+ ++PR VL L G I D A
Sbjct: 297 TIKKNASFFRDALKLEMREVMVHPVVMAYSFEKTILPRCAVLSVLMREGKINPDIQLLHA 356
Query: 351 VQVTEEVFVEKYISPYEDTAPHLAEDY 377
+ + + F +Y+ + P + E Y
Sbjct: 357 LLGSAKTFSGRYVDRFAADVPDVVEAY 383
>Os05g0413000 Mitochodrial transcription termination factor-related family
protein
Length = 395
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 146/334 (43%), Gaps = 15/334 (4%)
Query: 51 VEEYLVATCHLTPDQATKASKSISHL--KSP---SRPDAVVAFXXXXXXXXXXXXXXXXY 105
V YL+++C LTP A +A+ + L SP S DAVVA
Sbjct: 35 VVSYLISSCGLTPAAAARAAATSPWLPLASPDFASNADAVVALLRRYGFTDADISATVRA 94
Query: 106 DPRLLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVP----L 161
R+L ++ RTL P+L L +G++ + R+V + P R ++ S L + +
Sbjct: 95 FSRILASDPARTLQPKLDYLRSVGITAPLLPRVVSLSPVILHR-SIESHLAPLIASLREV 153
Query: 162 FGSFETLLQALKNNSYLLSSDLEKVVKPNVALLREC-GLGACDIAKLCIPLPRLLTTSPE 220
GS ++ AL+ + + + + +LR+ GL +++KL P ++ P
Sbjct: 154 LGSDSRIVTALRQMPFAMRCSPKATFLRTLPVLRDVHGLTPSELSKLVASQPGVILLGPG 213
Query: 221 RVRDMVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSK 280
R ++V ++ GV GS MF + A + + + K + ++L + + + + +
Sbjct: 214 RAGEIVQAVKDAGVEPGSPMFVYIFAAFSKLKAPTLENKFA-IYRSLGFGKDDIAVMLRR 272
Query: 281 LPVVLRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHC-VLKYLKDNG 339
LP SE++L R FL + GL I P +L+ SL+ R C VL L+ G
Sbjct: 273 LPNAAGISEERLKRTVGFLTGKAGLRREDIVAYPNLLSRSLDSHA--RRCAVLAVLRREG 330
Query: 340 LIESDKSYYSAVQVTEEVFVEKYISPYEDTAPHL 373
E + + F++ Y+ YE P +
Sbjct: 331 KPEGQHRVPHVLVASLARFMKAYVRRYEGEVPDV 364
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,189,837
Number of extensions: 405681
Number of successful extensions: 1184
Number of sequences better than 1.0e-10: 21
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 23
Length of query: 404
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 301
Effective length of database: 11,657,759
Effective search space: 3508985459
Effective search space used: 3508985459
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)