Os06g0224400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os06g0224400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.08 | 0.27 | 10.9 | 0.448 | 0.854 | 0.291 | -0.528 | 2.93 | -0.0784 | 19.3 | 10.82 | 4 | -- | -- |
| 38.76 | 0.292 | 10.9 | 0.0338 | 0.825 | 0.444 | -0.723 | -- | -0.193 | 19.7 | 24.1 | 5 | -- | -- |
| 33.82 | 0.271 | 10.9 | 0.467 | 0.853 | 0.277 | -- | 2.97 | -0.076 | 19.3 | 10.32 | 4 | -- | -- |
| 40.04 | 0.295 | 10.9 | 0.0598 | 0.831 | 0.38 | -- | -- | -0.188 | 19.5 | 24.1 | 13 | -- | -- |
| 64.24 | 0.373 | 10.8 | 0.453 | -- | 0.925 | -- | 3.33 | -0.159 | -- | 14.27 | 342 | -- | -- |
| 41.72 | 0.303 | 10.9 | 0.114 | 0.898 | -- | -0.481 | -- | -0.141 | 19 | -- | -- | -- | -- |
| 42.28 | 0.304 | 10.9 | 0.124 | 0.899 | -- | -- | -- | -0.142 | 18.9 | -- | -- | -- | -- |
| 63.01 | 0.37 | 10.9 | -0.0621 | -- | 0.865 | -- | -- | -0.237 | -- | 24.2 | 394 | -- | -- |
| 40.13 | 0.295 | 10.9 | -- | 0.827 | 0.396 | -- | -- | -0.197 | 19.5 | 24.1 | 13 | -- | -- |
| 84.62 | 0.43 | 10.9 | 0.104 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 42.68 | 0.306 | 10.9 | -- | 0.897 | -- | -- | -- | -0.156 | 18.9 | -- | -- | -- | -- |
| 63.04 | 0.37 | 10.9 | -- | -- | 0.856 | -- | -- | -0.241 | -- | 24.2 | 393 | -- | -- |
| 84.9 | 0.43 | 10.9 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 14 | 31.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 26 | 31.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 30 | 31.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 55 | 32.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 59 | 32.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 76 | 32.33 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 93 | 32.49 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 111 | 32.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 126 | 32.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 139 | 32.73 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 4 |
| 161 | 32.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 197 | 32.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 13 |
| 206 | 32.89 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 212 | 32.91 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 22 |
| 226 | 32.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 238 | 32.97 | temperature | 20 | 720 | > th | dose independent | sin | 23 | NA |
| 242 | 32.98 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 22 |
| 247 | 32.99 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 258 | 33.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 274 | 33.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 294 | 33.07 | temperature | 10 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 305 | 33.09 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 312 | 33.11 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 313 | 33.11 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 330 | 33.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 336 | 33.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 337 | 33.14 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 2 |
| 358 | 33.16 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 16 |
| 362 | 33.16 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 388 | 33.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 404 | 33.22 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 409 | 33.24 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 7 |
| 436 | 33.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 439 | 33.28 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 20 |
| 447 | 33.29 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 523 | 33.36 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 543 | 33.38 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 576 | 33.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 581 | 33.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 591 | 33.44 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 20 |
| 606 | 33.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 608 | 33.45 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 621 | 33.47 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 22 |
| 628 | 33.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 639 | 33.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 653 | 33.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 678 | 33.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 752 | 33.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 793 | 33.67 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 15 |
| 794 | 33.67 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 18 |
| 856 | 33.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 878 | 33.76 | wind | 3 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 997 | 33.87 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 1 |