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Os05g0403400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mitochodrial transcription termination factor-related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.1 (0.0221) R2 : 0.395
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.855 (0.0573) R2dC : 0.296 R2C : 0.278
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.383 (0.0465) R2dN8 : 0.116 R2N8 : 0.0982
σ : 0.417
deviance : 79.45
__
_____
C
peak time of C : 16.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.06 0.388 8.96 1.07 0.853 -0.796 0.442 5.41 -0.109 17.1 25.7 1115 -- --
75.27 0.407 9.11 -0.276 0.722 0.412 0.253 -- -0.429 17.1 25.7 1115 -- --
68.48 0.385 8.96 1.09 0.855 -0.816 -- 5.58 -0.114 17.2 25.82 1100 -- --
75.33 0.407 9.11 -0.277 0.726 0.443 -- -- -0.422 17.1 26.23 9786 -- --
96.28 0.459 9.11 -0.348 -- 0.914 -- 0.213 -0.474 -- 25.36 1194 -- --
77.75 0.413 9.11 -0.218 0.848 -- 0.426 -- -0.409 16.7 -- -- -- --
78.23 0.414 9.11 -0.216 0.851 -- -- -- -0.407 16.7 -- -- -- --
96.3 0.459 9.11 -0.37 -- 0.93 -- -- -0.48 -- 25.36 1194 -- --
75.03 0.403 9.08 -- 0.857 -0.338 -- -- -0.286 16.7 15.01 25772 -- --
116.63 0.505 9.1 -0.248 -- -- -- -- -0.429 -- -- -- -- --
79.45 0.417 9.1 -- 0.855 -- -- -- -0.383 16.7 -- -- -- --
99.85 0.467 9.1 -- -- 0.877 -- -- -0.436 -- 25.36 1194 -- --
118.25 0.508 9.1 -- -- -- -- -- -0.402 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.01 atmosphere 1005 270 > th dose independent rect. 24 6
3 66.68 temperature 25 720 > th dose dependent rect. 20 1
4 66.82 temperature 25 720 > th dose dependent rect. 18 5
7 66.95 atmosphere 1005 10 > th dose independent rect. 2 6
10 67.04 atmosphere 1005 30 > th dose independent rect. 24 8
25 67.39 humidity 90 720 > th dose dependent rect. 22 2
26 67.42 humidity 80 720 > th dose dependent rect. 20 4
38 67.63 atmosphere 1005 270 > th dose independent rect. 2 2
42 67.74 humidity 90 720 > th dose independent rect. 21 3
88 68.37 humidity 90 14400 > th dose dependent rect. 3 1
122 68.71 temperature 25 720 > th dose dependent sin 12 NA
134 68.85 radiation 20 14400 < th dose independent rect. 3 3
147 68.92 humidity 90 14400 > th dose independent rect. 2 2
149 68.95 atmosphere 1005 270 > th dose independent rect. 14 16
179 69.11 radiation 10 14400 < th dose dependent rect. 22 5
210 69.41 wind 7 14400 < th dose independent rect. 11 1
211 69.42 humidity 90 720 < th dose dependent rect. 18 12
225 69.51 humidity 50 1440 < th dose independent rect. 16 1
226 69.53 atmosphere 1005 30 > th dose independent rect. 15 17
229 69.55 atmosphere 1005 14400 > th dose independent rect. 11 1
243 69.61 wind 7 14400 > th dose independent rect. 11 1
245 69.61 temperature 25 720 < th dose independent rect. 19 5
248 69.61 humidity 50 1440 < th dose dependent rect. 16 1
258 69.65 atmosphere 1000 270 > th dose dependent rect. 24 6
260 69.66 wind 7 14400 > th dose dependent rect. 10 2
271 69.74 temperature 25 720 < th dose independent rect. 15 9
277 69.77 temperature 25 720 > th dose independent rect. 18 5
279 69.77 humidity 90 720 < th dose dependent rect. 20 3
286 69.84 humidity 90 1440 < th dose independent rect. 22 2
291 69.86 temperature 30 270 < th dose independent rect. 24 19
293 69.88 atmosphere 1000 10 > th dose dependent rect. 2 6
295 69.89 humidity 90 720 < th dose dependent rect. 19 6
370 70.11 humidity 70 720 > th dose dependent rect. 19 12
384 70.15 temperature 25 720 < th dose independent sin 15 NA
386 70.15 atmosphere 1005 30 > th dose independent rect. 18 14
404 70.20 humidity 90 720 < th dose dependent rect. 20 1
407 70.21 wind 1 90 < th dose independent rect. 4 1
408 70.21 wind 9 14400 > th dose independent rect. 23 15
410 70.22 atmosphere 1005 14400 < th dose independent rect. 11 1
431 70.28 wind 9 14400 > th dose independent rect. 3 11
438 70.29 humidity 90 14400 < th dose independent rect. 2 2
441 70.29 wind 9 14400 > th dose independent rect. 5 9
447 70.30 wind 1 90 < th dose dependent rect. 4 1
500 70.43 temperature 30 1440 > th dose independent rect. 9 6
515 70.46 wind 7 14400 > th dose dependent rect. 5 8
529 70.50 temperature 30 1440 > th dose independent rect. 18 21
530 70.50 atmosphere 1000 30 > th dose dependent rect. 24 8
555 70.54 wind 7 14400 > th dose independent rect. 18 1
595 70.64 humidity 90 14400 < th dose independent rect. 24 4
606 70.66 wind 9 14400 < th dose independent rect. 3 11
607 70.66 atmosphere 1000 270 > th dose dependent rect. 2 2
610 70.67 humidity 70 720 < th dose independent rect. 19 1
623 70.67 radiation 20 14400 > th dose independent rect. 17 14
627 70.69 temperature 30 1440 > th dose independent rect. 13 1
649 70.71 wind 9 14400 > th dose dependent rect. 23 15
657 70.73 wind 9 14400 > th dose dependent rect. 3 11
669 70.75 temperature 25 720 < th dose independent rect. 14 15
670 70.75 humidity 70 720 < th dose dependent rect. 19 1
678 70.75 humidity 70 90 > th dose dependent rect. 21 5
689 70.75 temperature 10 270 > th dose dependent rect. 5 19
694 70.77 radiation 20 14400 > th dose independent rect. 6 1
702 70.77 temperature 25 90 < th dose independent rect. 2 9
724 70.79 temperature 25 1440 > th dose dependent rect. 13 1
740 70.81 temperature 10 270 > th dose dependent rect. 5 9
766 70.85 temperature 25 1440 > th dose dependent rect. 11 20
772 70.86 wind 9 14400 < th dose independent rect. 23 15
773 70.86 atmosphere 1000 270 > th dose independent rect. 24 19
790 70.88 temperature 25 1440 > th dose dependent rect. 11 16
795 70.89 humidity 90 14400 < th dose independent rect. 24 1
796 70.89 wind 9 14400 < th dose independent rect. 7 7
800 70.90 wind 1 270 > th dose independent rect. 2 2
802 70.90 temperature 30 1440 < th dose independent rect. 9 6
821 70.92 temperature 20 270 > th dose independent rect. 5 19
833 70.93 temperature 30 1440 < th dose independent rect. 18 21
841 70.94 temperature 25 270 < th dose independent rect. 1 4
845 70.94 temperature 30 1440 < th dose independent rect. 22 17
846 70.94 temperature 30 1440 < th dose independent rect. 20 19
849 70.94 temperature 10 90 > th dose dependent rect. 7 19
864 70.96 temperature 30 1440 < th dose independent rect. 24 15
886 70.98 temperature 30 1440 < th dose independent rect. 5 10
897 70.99 temperature 25 270 < th dose independent rect. 24 9
899 70.99 temperature 30 1440 < th dose independent rect. 2 13
935 71.02 wind 5 90 < th dose dependent rect. 2 5
941 71.03 humidity 50 1440 > th dose independent rect. 16 1
965 71.04 radiation 1 14400 < th dose dependent rect. 19 10
976 71.06 radiation 20 1440 > th dose independent rect. 6 1