BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0403400 Os05g0403400|AK064244
(393 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0403400 Mitochodrial transcription termination factor-... 697 0.0
Os05g0403600 Mitochodrial transcription termination factor-... 274 1e-73
Os05g0413000 Mitochodrial transcription termination factor-... 152 5e-37
Os07g0423000 Mitochodrial transcription termination factor-... 134 1e-31
Os04g0637500 Mitochodrial transcription termination factor-... 110 2e-24
Os11g0246100 Mitochodrial transcription termination factor-... 101 7e-22
Os11g0206200 Mitochodrial transcription termination factor-... 100 2e-21
Os11g0206600 Mitochodrial transcription termination factor-... 100 3e-21
Os06g0224650 Mitochodrial transcription termination factor-... 94 1e-19
Os06g0225100 Mitochodrial transcription termination factor-... 94 2e-19
Os02g0749900 Mitochodrial transcription termination factor-... 90 3e-18
Os06g0224400 Mitochodrial transcription termination factor-... 86 5e-17
Os06g0224600 Mitochodrial transcription termination factor-... 82 8e-16
Os06g0225200 Mitochodrial transcription termination factor-... 81 1e-15
Os08g0528700 Mitochodrial transcription termination factor-... 78 1e-14
Os06g0224700 Mitochodrial transcription termination factor-... 75 8e-14
Os06g0224500 Mitochodrial transcription termination factor-... 69 7e-12
>Os05g0403400 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/393 (89%), Positives = 352/393 (89%)
Query: 1 MFPTAGGRRLLVLIRRXXXXXXXXXXXXXXXXXXTLFTHRYSSSPLARTPXXXXXXXXXY 60
MFPTAGGRRLLVLIRR TLFTHRYSSSPLARTP Y
Sbjct: 1 MFPTAGGRRLLVLIRRASAAAAAGANPNHHHHHATLFTHRYSSSPLARTPEAESAAAASY 60
Query: 61 LVASVGLSPAAAARISRKARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILNPD 120
LVASVGLSPAAAARISRKARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILNPD
Sbjct: 61 LVASVGLSPAAAARISRKARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILNPD 120
Query: 121 KILRPKLEYFASLGVVXXXXXXXXXXXXXXEKHLVPCVEFIRGVVGTDANLCAAISRNPW 180
KILRPKLEYFASLGVV EKHLVPCVEFIRGVVGTDANLCAAISRNPW
Sbjct: 121 KILRPKLEYFASLGVVPSALSRAPLLARSLEKHLVPCVEFIRGVVGTDANLCAAISRNPW 180
Query: 181 ALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEALELPIS 240
ALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEALELPIS
Sbjct: 181 ALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEALELPIS 240
Query: 241 HSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGILVFTAKTIQRKLSF 300
HSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGILVFTAKTIQRKLSF
Sbjct: 241 HSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGILVFTAKTIQRKLSF 300
Query: 301 YQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRPLQRSN 360
YQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRPLQRSN
Sbjct: 301 YQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRPLQRSN 360
Query: 361 ISFFERFVRKYEEDVPDVVKAYEGKIKFTGFMD 393
ISFFERFVRKYEEDVPDVVKAYEGKIKFTGFMD
Sbjct: 361 ISFFERFVRKYEEDVPDVVKAYEGKIKFTGFMD 393
>Os05g0403600 Mitochodrial transcription termination factor-related family
protein
Length = 399
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/361 (40%), Positives = 224/361 (62%), Gaps = 8/361 (2%)
Query: 36 LFTHRYSSSPLARTPXXXXXXXXXYLVASVGLSPAAA---ARISRKARFRSNADAEAVVS 92
L H YSS+ + + S GL PA A A +R R RS A+AV +
Sbjct: 35 LLFHSYSSTAVTGGSDPEPCPDTVSYLVSCGLPPAVARHTAANTRGLRIRSTEKADAVRT 94
Query: 93 LLRGHGFSDANIAQVLPKIPGLLILNPDKILRPKLEYFASLGVVXXXXXXX-XXXXXXXE 151
LLR +GFSDA++A++ P LL ++PD+I+RPKLE+FA++G E
Sbjct: 95 LLRSYGFSDADVARIARSAPLLLTVDPDRIIRPKLEFFATMGFQPSKLSTAPLLLARSLE 154
Query: 152 KHLVPCVEFIRGVVGTDANLCAAISRNPWALWCDINSSMRPAVESLRRHGL-AEANISRL 210
KHLVP ++F+R ++G+D + SR P AL +++ MRPAVE+L RHGL ++S++
Sbjct: 155 KHLVPTIQFLRSIIGSDDGIRRGFSRIPRALLVSLDNCMRPAVEALHRHGLTGREDVSKV 214
Query: 211 VVINLSALTMSPDRIDGIFGDLEALELPISHSRFVYGFWALSRLKRGAWEERMSVFMRFG 270
+V+ + L +SP RI IF DL+A+ + I+ RF F A+ ++R W +++++ FG
Sbjct: 215 LVLQMGVLMLSPVRIGEIFEDLKAMGMSITDGRFANSFRAMCSMRRATWLRKVALYRSFG 274
Query: 271 VSRSELLKAFREQPGILVFTAKTIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPK 330
+S SE+ +AF++QP L+ +TI++ SF+++ LK+ +V+ HP+++ +S EK I+P+
Sbjct: 275 LSESEVFEAFKKQPTALLGADETIKKNASFFRDALKLEMREVMVHPVVMAYSFEKTILPR 334
Query: 331 CAVLNVLLREGKIKRYGREMDLLRPLQRSNISFFERFVRKYEEDVPDVVKAYEGKIKFTG 390
CAVL+VL+REGKI ++ LL L S +F R+V ++ DVPDVV+AYEGKIKF G
Sbjct: 335 CAVLSVLMREGKIN---PDIQLLHALLGSAKTFSGRYVDRFAADVPDVVEAYEGKIKFKG 391
Query: 391 F 391
F
Sbjct: 392 F 392
>Os05g0413000 Mitochodrial transcription termination factor-related family
protein
Length = 395
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 178/346 (51%), Gaps = 20/346 (5%)
Query: 60 YLVASVGLSPAAAARISRKA--------RFRSNADAEAVVSLLRGHGFSDANIAQVLPKI 111
YL++S GL+PAAAAR + + F SNADA VV+LLR +GF+DA+I+ +
Sbjct: 38 YLISSCGLTPAAAARAAATSPWLPLASPDFASNADA--VVALLRRYGFTDADISATVRAF 95
Query: 112 PGLLILNPDKILRPKLEYFASLGVVX-----XXXXXXXXXXXXXEKHLVPCVEFIRGVVG 166
+L +P + L+PKL+Y S+G+ E HL P + +R V+G
Sbjct: 96 SRILASDPARTLQPKLDYLRSVGITAPLLPRVVSLSPVILHRSIESHLAPLIASLREVLG 155
Query: 167 TDANLCAAISRNPWALWCDINSSMRPAVESLRR-HGLAEANISRLVVINLSALTMSPDRI 225
+D+ + A+ + P+A+ C ++ + LR HGL + +S+LV + + P R
Sbjct: 156 SDSRIVTALRQMPFAMRCSPKATFLRTLPVLRDVHGLTPSELSKLVASQPGVILLGPGRA 215
Query: 226 DGIFGDLEALELPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPG 285
I ++ + FVY F A S+LK E + +++ G + ++ R P
Sbjct: 216 GEIVQAVKDAGVEPGSPMFVYIFAAFSKLKAPTLENKFAIYRSLGFGKDDIAVMLRRLPN 275
Query: 286 ILVFTAKTIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKR 345
+ + ++R + F K + D++A+P LL+ SL+ + +CAVL VL REGK +
Sbjct: 276 AAGISEERLKRTVGFLTGKAGLRREDIVAYPNLLSRSLDSHAR-RCAVLAVLRREGKPEG 334
Query: 346 YGREMDLLRPLQRSNISFFERFVRKYEEDVPDVVKAYEGKIKFTGF 391
R + L S F + +VR+YE +VPDV++A G+I F GF
Sbjct: 335 QHRVPHV---LVASLARFMKAYVRRYEGEVPDVLRAINGEIPFEGF 377
>Os07g0423000 Mitochodrial transcription termination factor-related family
protein
Length = 408
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 163/330 (49%), Gaps = 11/330 (3%)
Query: 60 YLVASVGLSPAAAARISRKARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILNP 119
+L + GLS AA + + R RS A A+V+L RG GFS A+IA+++ P LL
Sbjct: 71 FLRNTCGLSEDEAAAAAARVRLRSTKKAHAIVALFRGIGFSAADIARLVTSNPSLLSYRA 130
Query: 120 DKILRPKLEYFA-SLGVVXXXXXXXXXXX------XXXEKHLVPCVEFIRGVVGTDANLC 172
D L PK+E+F LG+ ++ + P +R ++G+D N+
Sbjct: 131 DATLMPKIEFFRRELGLTDAEIRRLVLANPYRVLRYSLKRCIRPNYLILRDLLGSDKNVT 190
Query: 173 AAISRNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDL 232
AA+ ++ + D+ + P ++ L+ +G I +LV + AL R + +
Sbjct: 191 AAVLQSTDLIHGDVRGILLPKIKILQDYGATNDVIVKLVTTHPRALMHRASRFEESLAAM 250
Query: 233 EALELPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGILVFTAK 292
+ L + S F Y F +RL W+ RM F+ G ++ ++++AF P + +
Sbjct: 251 KELGVRPSSGMFPYSFGLFARLHPRKWKGRMDNFLSLGWTKEQVIEAFVRHPYCMSVSND 310
Query: 293 TIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDL 352
++ F +KL+ V P++L+FS +K I+P+C VLN+L G R + L
Sbjct: 311 KVKLIWQFLAKKLRWTTDYVARSPMVLSFSYDKRILPRCTVLNLLASRGIFNRDIKTSHL 370
Query: 353 LRPLQRSNISFFERFVRKYEEDVPDVVKAY 382
+ ++ F E++V Y++++P+V++AY
Sbjct: 371 VLGEKK----FKEKYVTPYQDEIPEVLEAY 396
>Os04g0637500 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 11/334 (3%)
Query: 60 YLVASVGLSPAAAARIS-RKARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
YLV+ GLSPAAAA+ + R A S + +A ++ LR G + A + +V+ P LL+ +
Sbjct: 56 YLVSKCGLSPAAAAKAAPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKPELLLSD 115
Query: 119 PDKILRPKLEYFASLG-----VVXXXXXXXXXXXXXXEKHLVPCVEFIRGVVGTDANLCA 173
D L PK +LG V +L+P V F +G+ L
Sbjct: 116 VDATLDPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMK 175
Query: 174 AISRNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLE 233
+++ W L +++ +R + +LR G+ ++ I+ V + + +T +P R + G +E
Sbjct: 176 WLAKT-WLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQKLVGRVE 233
Query: 234 ALELPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKA-FREQPGILVFTAK 292
A +P S +++ F+AL + G++ + + + E A FR P ++ A
Sbjct: 234 ACGVPPSSGMYMWAFFALHNVSEGSFRAKKAAVVGAAGCTEEEFDAMFRRAPCLVFVPAA 293
Query: 293 TIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDL 352
++RK+ F + ++ +P+LLT SL K + P+C V+ L G G++ +L
Sbjct: 294 LLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRG--VGIGKKANL 351
Query: 353 LRPLQRSNISFFERFVRKYEEDVPDVVKAYEGKI 386
++ F ER+V +Y+E+VP++++ Y ++
Sbjct: 352 GSVMRYPEDKFVERYVLRYKEEVPELLELYPPRL 385
>Os11g0246100 Mitochodrial transcription termination factor-related family
protein
Length = 417
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 163/369 (44%), Gaps = 42/369 (11%)
Query: 37 FTHRYSSSPLARTPXXXXXXXXXYLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLR 95
THR S+ AR+P YL+A+ GL+ A A R S K +R S+++ +AV++LL
Sbjct: 26 LTHRLLSTA-ARSPFSVEH----YLIATCGLTAAQARRASPKLSRLNSSSNPDAVLALLS 80
Query: 96 GHG-------FSDANIAQVLPKIPGLLILNPDKILR-------------PKLEYFASLGV 135
S A++A V+ P LL P I R P++ F G
Sbjct: 81 SSAAGLDSLSLSRADLAAVVAAEPRLLRARPGTIARRIASLRGRANLSAPQIRSFLMSG- 139
Query: 136 VXXXXXXXXXXXXXXEKHLVPCVEFIRGVVGTDANLCAAISRNPWALWCDINSSMRPAVE 195
+ P + F +G+ L + R L D++ +RP V
Sbjct: 140 ---------GAAHLASSDVSPKLAFWVPFLGSFDMLLKILRRCNAILATDVDRVVRPNVA 190
Query: 196 SLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEALELPISHSRFVYGFWALSRLK 255
L GL +I ++ LT +P+R+ + E L +P S F ++R
Sbjct: 191 LLGECGLGVCDIVQMTQTAAWLLTFNPERLKIVVRRAEELGVPTSSWAFKDAVCTVARNN 250
Query: 256 RGAWEERMSVFMR--FGVSRSELLKAFREQPGILVFTAKTIQRKLSFYQEKLKVAPADVI 313
G RM F+R G S +L A +P IL F+ KT++ K+ F K+++ ++
Sbjct: 251 EGTIAARME-FLRGTLGCSMDKLRSAISRKPSILGFSEKTLRGKIEFLLTKVQLETEYIL 309
Query: 314 AHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRPLQRSNISFFERFVRKYEE 373
P++LT SL+K + P+ VL L+ +G IK ++D + N F R++ ++E+
Sbjct: 310 QRPVMLTLSLDKRLAPRHYVLQALVEKGLIK---NDVDYYSCVCFGNEHFVARYIDRHED 366
Query: 374 DVPDVVKAY 382
+P + AY
Sbjct: 367 ALPGLTDAY 375
>Os11g0206200 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 148/328 (45%), Gaps = 6/328 (1%)
Query: 60 YLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
YLV + GL+ A A + S+K + RS A +AV+++L G G S A++A V+ P LL
Sbjct: 66 YLVDTCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSRADLAAVVASDPQLLCAR 125
Query: 119 PDKILRPKLEYFASLGVVXXXXXXXXXXXXXXEKHLVPC---VEFIRGVVGTDANLCAAI 175
D I R +G+ H +EF +G+ L +
Sbjct: 126 ADNIARRIASLRDRVGLSDPQIGSFLLAGGAKGIHACDVASRLEFWIPFLGSFETLLRIL 185
Query: 176 SRNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEAL 235
N + D+ ++P + L+ GL +I+++ T +P +++G + L
Sbjct: 186 KGNNVLVLSDLEKVIKPNIALLQECGLTVCDIAKMARFAPRMFTSNPKQVEGFVRRADEL 245
Query: 236 ELPISHSRFVYGFWALSRLKRGAWEERMSVFMR-FGVSRSELLKAFREQPGILVFTAKTI 294
+P + +F Y + + G+ RM R G S +L A ++ P IL + +
Sbjct: 246 GVPRTSGQFKYMVGIFANISEGSATARMEYLSRSLGCSMDKLRSAVQKLPQILGLSETNL 305
Query: 295 QRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLR 354
K+ F K+++ P ++ P L T+SLEK ++ + ++ VL +G +K +++
Sbjct: 306 GSKIEFLVGKVRLEPEYLLKTPKLFTYSLEKRLVARHYIVQVLAAKG-LKGLKKDVPFCS 364
Query: 355 PLQRSNISFFERFVRKYEEDVPDVVKAY 382
+Q F + F+ ++E VP + AY
Sbjct: 365 YVQLGESCFVKNFIDQHENVVPGLSDAY 392
>Os11g0206600 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 20/334 (5%)
Query: 60 YLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
YLVA+ GL+ A A + S+K + RS A +AV+++L G G S A++A V+ P LL
Sbjct: 54 YLVATCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSRADLAAVVAADPMLLCAR 113
Query: 119 PDKILRPKLEYFASLGVVXXXXX---XXXXXXXXXEKHLVPCVEFIRGVVGTDANLCAAI 175
+ R +G+ + + P +EF G VG+ L A+
Sbjct: 114 ARNVARRLHSLRDRVGLSDADVARFLLAGGAMGLRKCDIAPRLEFWIGFVGSFDKLLPAL 173
Query: 176 SRNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEAL 235
N L D++ ++P + L+ GL+ I++L + + L++SP+R+ +E L
Sbjct: 174 KGNNGILMSDLDKVVKPNIALLQECGLSVCEIAKLSTLKWTVLSLSPERVKASVLCVEKL 233
Query: 236 ELPISHSRFVYGFWALSRLKRGAW--EERMSVFMRF-----GVSRSELLKAFREQPGILV 288
+P S RF + LK W E+ +++ M F G S +L A P I
Sbjct: 234 VVPRSSDRFKH------VLKSACWISEDMLAMKMEFLRSTLGCSEDKLRAAVCISPHIFY 287
Query: 289 FTAKTIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGR 348
+ K + RK+ F ++ + ++ P +L +SLEK ++P+ +V+ +L G +K
Sbjct: 288 LSDKNLCRKIDFLISEVGLEREFIVERPWVLGYSLEKRMVPRHSVMKILRTMGLMK---D 344
Query: 349 EMDLLRPLQRSNISFFERFVRKYEEDVPDVVKAY 382
+D L S F R++ Y++ P + +Y
Sbjct: 345 AVDFSSSLVYSEKKFVARYIDPYKQAAPTLADSY 378
>Os06g0224650 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 145/327 (44%), Gaps = 7/327 (2%)
Query: 60 YLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
YLVA GL+ A AA+ S K + S ++ +AV++ L G IA + P LL +
Sbjct: 51 YLVAGCGLTRAEAAKASAKISHLSSPSNPDAVIAFLSDLGLPRPQIAAAIAADPRLLCAD 110
Query: 119 PDKILRPKLEYFASLGVVXXXXXXXXXXX--XXXEKHLVPCVEFIRGVVGTDANLCAAIS 176
+K L ++ LG L + F V G+ + A+
Sbjct: 111 VEKNLAKRVGELGDLGFSRSQIARLLPLAGWCFRSSSLATNLAFWLPVFGSFDKILKALR 170
Query: 177 RNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLS-ALTMSPDRIDGIFGDLEAL 235
N L + S +P + L + G+ ++++R + S LT +P+ + +E L
Sbjct: 171 MNKNLLSPGVQKSAKPILAFLEQCGINASDVARSSTMYSSRLLTANPEYLRDAVARVEEL 230
Query: 236 ELPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGILVFTAKTIQ 295
L S RF G A++ + + ++ + G S+ +LL R+ P L + K I+
Sbjct: 231 GLDRSSRRFHRGLVAVALVSKETAARKIRLMEELGFSQDDLLVIMRKLPNFLALSEKKIR 290
Query: 296 RKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRP 355
R + F + + + ++ P+LL++SLE+ ++P+ +L VL +G + E+D
Sbjct: 291 RAVEFLKRDVGLEGRYIVQRPVLLSYSLERRLLPRHCLLKVLRTKGLLN---SELDYYST 347
Query: 356 LQRSNISFFERFVRKYEEDVPDVVKAY 382
S F +FV YE+ + + AY
Sbjct: 348 AALSEKKFVNKFVHPYEDHIAGLADAY 374
>Os06g0225100 Mitochodrial transcription termination factor-related family
protein
Length = 404
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 148/327 (45%), Gaps = 7/327 (2%)
Query: 60 YLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
YLVA+ L+P A + S+ + +S + +AVV+ L G G S A+IA + P LL
Sbjct: 54 YLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFLAGLGLSAADIAAAVAYDPRLLCAE 113
Query: 119 PDKILRPKLEYFASLGVVXXXXXXXXXXXXXXEKH--LVPCVEFIRGVVGTDANLCAAIS 176
D+ L P+L A LG+ + ++ +++ + G+ L A+
Sbjct: 114 VDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETLLQALK 173
Query: 177 RNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEALE 236
N + L D+ ++P V LR GL +I++L + LT SP+R+ + E +
Sbjct: 174 NNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRDMVAQAENVG 233
Query: 237 LPISHSRFVYGFWALSRLKRGAWEERMSVFMR-FGVSRSELLKAFREQPGILVFTAKTIQ 295
+ F + A++ + +M M+ S +E A + P +L + +
Sbjct: 234 VRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLRSSEDKLS 293
Query: 296 RKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRP 355
R F ++ + PA + P +LT+SLE+ ++P+ VL L G I+ +
Sbjct: 294 RVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIE---SDKSYYSA 350
Query: 356 LQRSNISFFERFVRKYEEDVPDVVKAY 382
+Q + F E+++ YE+ P + + Y
Sbjct: 351 VQVTEEVFVEKYISPYEDTAPHLAEDY 377
>Os02g0749900 Mitochodrial transcription termination factor-related family
protein
Length = 382
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 154/344 (44%), Gaps = 29/344 (8%)
Query: 61 LVASVGLSPAAAARISRK-ARFRSNADAE-AVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
LVA+ GL+ A A + S++ + SN DA ++ L S +IA + P L L
Sbjct: 46 LVAACGLTGAEALKASKRLQKVPSNLDAALTFLAFLADFRLSKDDIAAASSRYPRFLHLK 105
Query: 119 PDKILRPKLEYFASLGVVXXXXXXXXXXXXXXEKHLVPCV----------EFIRGVVGTD 168
D+ L ++ +G+ + PC+ EF +G+
Sbjct: 106 VDETLTSQVARLRDIGLSTPEIGRLIT--------IAPCILSNPRTISRLEFYLSFLGSY 157
Query: 169 ANLCAAISRNPWALW-CDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDG 227
+ +A+ N L +I S ++P + L + GL +I+++++ L M P+ +
Sbjct: 158 PRVHSALRNNSSLLRRNNIESEVKPNIAFLEQCGLTTCDIAKILMSGSRILIMQPEHVKE 217
Query: 228 IFGDLEALELPISHSRFVYGFWALSRLKRGAWEERMSVF-MRFGVSRSELLKAFREQPGI 286
I + +P + F Y A++ + ++ M G S ++L A P I
Sbjct: 218 IVACADKFGMPRESAGFRYALMAVTGISPVRVSAKLDFLRMVIGCSDAQLHIAVSRFPLI 277
Query: 287 LVFTAKTIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRY 346
L ++ + R L F + ++ + P ++ P LL +S++K ++P+ V+ VL +G +K+
Sbjct: 278 LTYSEVKLSRSLEFLKAEVGLEPQYIVLRPALLGYSIQKRLMPRYHVMKVLNEKGLLKK- 336
Query: 347 GREMDLLRPLQRSNISFFERFVRKYEEDVPDVVKAY----EGKI 386
+ D ++ SFF++F+ Y VP + KAY EGK+
Sbjct: 337 --DTDFYSMVKIVEESFFKKFLLPYHRSVPGLEKAYLAAREGKM 378
>Os06g0224400 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 148/344 (43%), Gaps = 27/344 (7%)
Query: 60 YLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
YLV S GL+ A A + S K + RS ++ +AV++ L G G S +IA V+ P +
Sbjct: 49 YLVDSCGLTRARAKKASGKLSHLRSPSNPDAVLAFLSGLGLSRPDIAAVVVNDPLFICAR 108
Query: 119 PDKILRPKLEYFASLGVVXXXXXXXXXXXXXX--EKHLVPCVEFIRGVVGTDANLCAAIS 176
DK L ++ LG+ K L P + F+ V G+ I
Sbjct: 109 VDKTLATRVAELTDLGLSRSQIARLIPVVRSLFRCKSLAPRLAFLLTVFGSFDRCLEVIK 168
Query: 177 RNPWALWCDINSSMRPAVESLRRHGLAEAN----------ISRLVVINLSALTMSPDRID 226
N L ++ + ++P + L+ G++ A+ ISR A+ ++ +
Sbjct: 169 TNYGVLSSNVEAVIKPNLAVLKECGISIADRPSYAFASRVISRPTKHLEEAVVLANE--- 225
Query: 227 GIFGDLEALELPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGI 286
FG + + +++ ++G +L + ++ F + G S+ +L A R P I
Sbjct: 226 --FGAKQGTRV-FTNAVMIFGILGQEKLAK-----KLEFFKKLGWSQDDLSLAVRSMPHI 277
Query: 287 LVFTAKTIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRY 346
L + ++R + F E + + + P L +S+E+ ++P+ ++NVL G +K
Sbjct: 278 LAMKEERMRRGMKFLTEDVGLEIPYIARRPALTMYSIERRLLPRHCLINVLKGNGLLK-- 335
Query: 347 GREMDLLRPLQRSNISFFERFVRKYEEDVPDVVKAYEGKIKFTG 390
D SN F E+FV+ Y E VP + AY G
Sbjct: 336 -ANYDFYNISVISNDDFMEKFVQPYVESVPGLGDAYASSCTGCG 378
>Os06g0224600 Mitochodrial transcription termination factor-related family
protein
Length = 389
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 146/327 (44%), Gaps = 7/327 (2%)
Query: 60 YLVASVGLSPAAAARIS-RKARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
YLVA+ GL+ A AAR S R + RS + +AV++ L G G +IA + P LL
Sbjct: 48 YLVAACGLTRAQAARASERISHLRSPSKPDAVLAFLAGLGIPRPDIATAVAADPRLLCAG 107
Query: 119 PDKILRPKLEYFASLGVVXXXXXXXXXXXXX--XEKHLVPCVEFIRGVVGTDANLCAAIS 176
+ L ++ LG+ L + F V G+ ++ A+
Sbjct: 108 VEGNLAKRVAELGDLGIPRSQIARLVPLAKIPFRSSSLATNLAFWLPVFGSLDSILRALR 167
Query: 177 RNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSAL-TMSPDRIDGIFGDLEAL 235
+N L +++ ++P + L++ G+ +++ + S L T +P ++ +E L
Sbjct: 168 KNSSLLSANLDKVVKPNLAFLKQCGIDARDVASNPNLYSSRLFTSNPMKLRDAVARVEEL 227
Query: 236 ELPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGILVFTAKTIQ 295
+ F G A++ L + A + + + G S+ ++ FR+ P L + K I+
Sbjct: 228 GMVRGSRVFHRGLVAVAFLSKEAVATKTRLLVELGFSQDDVSVIFRKMPSFLTASEKRIR 287
Query: 296 RKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRP 355
R + F + + + + P+LL +SLE+ ++P+ +L VL +G + ++
Sbjct: 288 RAVGFLKGDVGLEERYIARRPVLLLYSLERRLLPRYYLLKVLRTKGLLD---CKLCYYST 344
Query: 356 LQRSNISFFERFVRKYEEDVPDVVKAY 382
F ERFV YE+ + + AY
Sbjct: 345 AALGEKKFIERFVHPYEDHIAGLADAY 371
>Os06g0225200 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 7/326 (2%)
Query: 60 YLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
YLVA+ GL+ A A + S+K + RS + +AV++ L G IA V P L +
Sbjct: 54 YLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCAD 113
Query: 119 PDKILRPKLEYFASLGVVXXXXXXXXXXXXXX--EKHLVPCVEFIRGVVGTDANLCAAIS 176
+ L +++ LG+ + + F +VG+ + A+
Sbjct: 114 VESNLARRVDELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALR 173
Query: 177 RNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEALE 236
N L D+ ++P +E L++ G+++ S + T +P + +E L
Sbjct: 174 MNSSLLGSDLEKVVKPNLELLKQCGMSDFATS-FPLYTSRLFTANPIYLRDAVARVEELG 232
Query: 237 LPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGILVFTAKTIQR 296
L S F +G A++ + + ++ V G SR ELL R+ P ++ + + I++
Sbjct: 233 LDRSSRMFRHGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQ 292
Query: 297 KLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRPL 356
F + + + + P+L +SLE+ ++P+ +L VL +G + E+D
Sbjct: 293 AAEFLKRDVGLEGRYIAHRPVLFLYSLERRLLPRHHLLKVLRMKGLLD---CELDYYNTA 349
Query: 357 QRSNISFFERFVRKYEEDVPDVVKAY 382
S F +FV Y+ +P + AY
Sbjct: 350 AMSERKFVRKFVDPYKCHIPGLADAY 375
>Os08g0528700 Mitochodrial transcription termination factor-related family
protein
Length = 190
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 4/179 (2%)
Query: 205 ANISRLVVINLSALTMSPDRIDGIFGDLEALELPISHSRFVYGFWALSRLKRGAWEERMS 264
+I ++ + LT SP+R+ I E L +P F A++R G RM
Sbjct: 3 CDIVQMSQTSARVLTFSPERLKVIVQQAEKLRMPGCSWAFKNAVGAVARSNEGIVNARME 62
Query: 265 VFMR-FGVSRSELLKAFREQPGILVFTAKTIQRKLSFYQEKLKVAPADVIAHPLLLTFSL 323
G S +L A + P IL + + K+ F K+ + P ++ P+LLT+SL
Sbjct: 63 FLSSSLGCSMEKLRSAVCKCPQILGLSESKLHSKIEFLVGKVGLEPDYILQRPVLLTYSL 122
Query: 324 EKNIIPKCAVLNVLLREGKIKRYGREMDLLRPLQRSNISFFERFVRKYEEDVPDVVKAY 382
EK ++P+ V+ VLL +G IK + +D + SN F R++ +E VP + AY
Sbjct: 123 EKRLLPRHYVVEVLLVKGLIK---KTVDFYGCVCVSNEDFVARYIDHHENAVPGLADAY 178
>Os06g0224700 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 142/329 (43%), Gaps = 9/329 (2%)
Query: 60 YLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLRGHGFSDAN-IAQVLPKIPGLLIL 117
YLVA+ GL+ A AA+ S K + RS ++ +AV++ L G S + IA + P LL
Sbjct: 51 YLVATCGLTRAQAAKASEKLSNLRSPSNPDAVLAFLSDLGLSRPDGIAAAVAADPRLLCA 110
Query: 118 NPDKILRPKLEYFASLGVVXXXXXXXXXXXXXX--EKHLVPCVEFIRGVVGTDANLCAAI 175
+ L +++ LG+ L + F V G+ N+ A+
Sbjct: 111 DVGSSLARRVDELGGLGLSRSQIARLLPLAGRCFRSSSLATRLAFWHPVFGSFENILKAL 170
Query: 176 SRNPWALWCDINSSMRPAVESLRRHGLAEANISR--LVVINLSALTMSPDRIDGIFGDLE 233
N L D++ +P + L + G+ ++++R L + + T++P + +E
Sbjct: 171 KMNAALLGSDLDKVAKPNLAFLAQCGINASDVTRTTLSLYSCRLFTVNPRFLQDAVARVE 230
Query: 234 ALELPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGILVFTAKT 293
L + F ++ L R +M + G S+ + L R P +L +
Sbjct: 231 ELGVARGWRTFHRVLSTVAFLSRETIASKMQLLDDLGFSQDDFLVIVRRAPQVLRLSDGR 290
Query: 294 IQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLL 353
I+R + F + + + + P LL +SLE+ ++P+ +L VL +G + ++
Sbjct: 291 IRRSVEFLIRDVGLEQSYIAQRPTLLAYSLERRLLPRHCLLKVLKAKGLLN---CDLSYY 347
Query: 354 RPLQRSNISFFERFVRKYEEDVPDVVKAY 382
S F +RFV +++ + + AY
Sbjct: 348 CIAAMSEEKFVQRFVDPFKDKIQGLADAY 376
>Os06g0224500 Mitochodrial transcription termination factor-related family
protein
Length = 330
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 20/245 (8%)
Query: 158 VEFIRGVVGTDANLCAAISRNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVI---- 213
+ + G+ T ++ AA++ +P L ++ ++ V L GL+ + I+RL+ +
Sbjct: 80 LAILSGLGLTRPDIAAAVASDPRLLCARVDRTLDARVAELGGIGLSRSQIARLIPLARGG 139
Query: 214 --------NLSALTMSPDRIDGIFGDLEALELPISHSRFVYGFWALSRLKRGAWEERMSV 265
L+ L P G +L A++ F + L +G ++ +
Sbjct: 140 FRIKSLGSKLAFLVTVPG---GCQDELWAIK--PGTRLFALAVVKFAILSQGKITKKSGL 194
Query: 266 FMRFGVSRSELLKAFREQPGILVFTAKTIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEK 325
F + G S+ +L A + P IL K +++++ F E + + + P L+ +S+E+
Sbjct: 195 FKKLGWSQEDLSLAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIER 254
Query: 326 NIIPKCAVLNVLLREGKIKRYGREMDLLRPLQRSNISFFERFVRKYEEDVPDVVKAYEGK 385
++P+ ++NVL R G +K D SN F ++FV Y E VP + AY
Sbjct: 255 RLLPRHCLINVLKRNGLLK---INYDFYSTALISNEKFLDKFVHPYVESVPGIGDAYASS 311
Query: 386 IKFTG 390
G
Sbjct: 312 CAGCG 316
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,128,238
Number of extensions: 398564
Number of successful extensions: 1282
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 1229
Number of HSP's successfully gapped: 18
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)