Os04g0637500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os04g0637500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.16 | 0.326 | 8.66 | 0.866 | 0.361 | 0.711 | -0.129 | -1.61 | -0.0194 | 19.7 | 25.44 | 329 | -- | -- |
| 50.73 | 0.332 | 8.7 | 0.627 | 0.347 | 0.956 | 0.0505 | -- | -0.104 | 20 | 23.31 | 385 | -- | -- |
| 48.2 | 0.323 | 8.66 | 0.861 | 0.36 | 0.715 | -- | -1.56 | -0.0217 | 19.7 | 25.4 | 327 | -- | -- |
| 50.72 | 0.332 | 8.7 | 0.61 | 0.343 | 0.964 | -- | -- | -0.106 | 20 | 23.21 | 384 | -- | -- |
| 53.88 | 0.342 | 8.67 | 0.781 | -- | 0.662 | -- | -1.39 | -0.0773 | -- | 24.2 | 242 | -- | -- |
| 61.76 | 0.368 | 8.73 | 0.385 | 0.286 | -- | 0.0123 | -- | -0.25 | 20.6 | -- | -- | -- | -- |
| 61.76 | 0.368 | 8.73 | 0.384 | 0.285 | -- | -- | -- | -0.25 | 20.7 | -- | -- | -- | -- |
| 54.96 | 0.345 | 8.7 | 0.757 | -- | 0.917 | -- | -- | -0.108 | -- | 19.93 | 4463 | -- | -- |
| 59.46 | 0.359 | 8.72 | -- | 0.325 | 0.669 | -- | -- | -0.206 | 20.3 | 23.55 | 381 | -- | -- |
| 66.35 | 0.381 | 8.72 | 0.384 | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
| 65.65 | 0.379 | 8.74 | -- | 0.284 | -- | -- | -- | -0.292 | 20.8 | -- | -- | -- | -- |
| 64.55 | 0.375 | 8.72 | -- | -- | 0.595 | -- | -- | -0.223 | -- | 23.55 | 381 | -- | -- |
| 70.23 | 0.391 | 8.73 | -- | -- | -- | -- | -- | -0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 3 | 45.30 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 4 | 45.40 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 7 | 45.50 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 21 | 45.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 23 | 45.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 25 | 45.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 27 | 45.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 11 |
| 60 | 46.05 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 66 | 46.09 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 81 | 46.23 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 86 | 46.26 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 88 | 46.28 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 97 | 46.33 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 98 | 46.34 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 100 | 46.35 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 102 | 46.35 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 109 | 46.38 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 155 | 46.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 156 | 46.53 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 159 | 46.54 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 181 | 46.58 | humidity | 60 | 43200 | < th | dose dependent | sin | 5 | NA |
| 187 | 46.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 207 | 46.64 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 259 | 46.72 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 275 | 46.75 | humidity | 50 | 43200 | > th | dose independent | sin | 3 | NA |
| 287 | 46.77 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 324 | 46.80 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 373 | 46.83 | humidity | 50 | 43200 | < th | dose independent | sin | 3 | NA |
| 388 | 46.83 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 20 |
| 394 | 46.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 400 | 46.84 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 450 | 46.85 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 469 | 46.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 477 | 46.87 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 492 | 46.88 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 506 | 46.88 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 536 | 46.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 551 | 46.91 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 564 | 46.92 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 583 | 46.94 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 585 | 46.94 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 648 | 46.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 649 | 46.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 654 | 46.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 697 | 47.00 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 730 | 47.00 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 735 | 47.00 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 751 | 47.01 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 767 | 47.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 774 | 47.02 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 852 | 47.04 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 21 |
| 859 | 47.05 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 873 | 47.05 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 879 | 47.05 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 910 | 47.06 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 930 | 47.06 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 937 | 47.07 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 971 | 47.08 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 972 | 47.08 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 1 |