BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0637500 Os04g0637500|AK108202
(393 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0637500 Mitochodrial transcription termination factor-... 716 0.0
Os11g0246100 Mitochodrial transcription termination factor-... 139 3e-33
Os06g0225100 Mitochodrial transcription termination factor-... 134 1e-31
Os11g0206600 Mitochodrial transcription termination factor-... 132 6e-31
Os11g0206200 Mitochodrial transcription termination factor-... 129 3e-30
Os06g0224600 Mitochodrial transcription termination factor-... 129 5e-30
Os06g0224650 Mitochodrial transcription termination factor-... 122 4e-28
Os06g0224700 Mitochodrial transcription termination factor-... 122 5e-28
Os06g0225200 Mitochodrial transcription termination factor-... 117 1e-26
Os05g0413000 Mitochodrial transcription termination factor-... 108 7e-24
Os05g0403400 Mitochodrial transcription termination factor-... 106 2e-23
Os06g0224900 Mitochodrial transcription termination factor-... 104 1e-22
Os02g0749900 Mitochodrial transcription termination factor-... 102 4e-22
Os07g0423000 Mitochodrial transcription termination factor-... 99 7e-21
Os11g0206300 Mitochodrial transcription termination factor-... 91 2e-18
Os06g0224400 Mitochodrial transcription termination factor-... 89 5e-18
Os06g0224500 Mitochodrial transcription termination factor-... 68 1e-11
Os05g0403600 Mitochodrial transcription termination factor-... 68 1e-11
Os08g0528700 Mitochodrial transcription termination factor-... 66 4e-11
>Os04g0637500 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/393 (91%), Positives = 361/393 (91%)
Query: 1 MALRRFAVAGRVLLHRVESLPPPRPPLAFLSSESRGHLVRRFSTPSSTPPHFMVQYLVSK 60
MALRRFAVAGRVLLHRVESLPPPRPPLAFLSSESRGHLVRRFSTPSSTPPHFMVQYLVSK
Sbjct: 1 MALRRFAVAGRVLLHRVESLPPPRPPLAFLSSESRGHLVRRFSTPSSTPPHFMVQYLVSK 60
Query: 61 CGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKPELLLSDVDATL 120
CGLSP PRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKPELLLSDVDATL
Sbjct: 61 CGLSPAAAAKAAPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKPELLLSDVDATL 120
Query: 121 DPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMKWLAKT 180
DPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMKWLAKT
Sbjct: 121 DPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMKWLAKT 180
Query: 181 WLLRYSVDALLRNLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQKLVGRVEACGVPPS 240
WLLRYSVDALLRNLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQKLVGRVEACGVPPS
Sbjct: 181 WLLRYSVDALLRNLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQKLVGRVEACGVPPS 240
Query: 241 SGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRAPCLVFVPAALLRRKVE 300
SGMYMWAFFALHNVSEGSFR CTEEEFDAMFRRAPCLVFVPAALLRRKVE
Sbjct: 241 SGMYMWAFFALHNVSEGSFRAKKAAVVGAAGCTEEEFDAMFRRAPCLVFVPAALLRRKVE 300
Query: 301 FLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVGIGKKANLGSVMRYPED 360
FLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVGIGKKANLGSVMRYPED
Sbjct: 301 FLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVGIGKKANLGSVMRYPED 360
Query: 361 KFVERYVLRYKXXXXXXXXXXXXXXCKGSSQTR 393
KFVERYVLRYK CKGSSQTR
Sbjct: 361 KFVERYVLRYKEEVPELLELYPPRLCKGSSQTR 393
>Os11g0246100 Mitochodrial transcription termination factor-related family
protein
Length = 417
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 182/372 (48%), Gaps = 20/372 (5%)
Query: 13 LLHRVESLPPPRPPLAFLSSESRGHLVRRFSTPSSTPPHFMVQYLVSKCGLSPXXXXXXX 72
+LH L P +S S HL R + ++ P + YL++ CGL+
Sbjct: 1 MLHLRNHLLPLLHAATSTASSSPLHLTHRLLSTAARSPFSVEHYLIATCGLTAAQARRAS 60
Query: 73 PRFAHLDSASRPDAALAFLRSQG-------LTRAQVREVVSWKPELLLSDVDATLDPKFR 125
P+ + L+S+S PDA LA L S L+RA + VV+ +P LL + T+ +
Sbjct: 61 PKLSRLNSSSNPDAVLALLSSSAAGLDSLSLSRADLAAVVAAEPRLLRAR-PGTIARRIA 119
Query: 126 AVRALGLGRADVA----RLFALYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMKWLAK-T 180
++R GRA+++ R F L + +++ P++ FW+ FLGS +L+K L +
Sbjct: 120 SLR----GRANLSAPQIRSF-LMSGGAAHLASSDVSPKLAFWVPFLGSFDMLLKILRRCN 174
Query: 181 WLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQKLVGRVEACGVPP 239
+L VD ++R N++ L G+ I + L+T P R + +V R E GVP
Sbjct: 175 AILATDVDRVVRPNVALLGECGLGVCDIVQMTQTAAWLLTFNPERLKIVVRRAEELGVPT 234
Query: 240 SSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRAPCLVFVPAALLRRKV 299
SS + A + +EG+ C+ ++ + R P ++ LR K+
Sbjct: 235 SSWAFKDAVCTVARNNEGTIAARMEFLRGTLGCSMDKLRSAISRKPSILGFSEKTLRGKI 294
Query: 300 EFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVGIGKKANLGSVMRYPE 359
EFL+ + + +I+ PV+LTLSL KR+APR V++AL +G+ I + S + +
Sbjct: 295 EFLLTKVQLETEYILQRPVMLTLSLDKRLAPRHYVLQALVEKGL-IKNDVDYYSCVCFGN 353
Query: 360 DKFVERYVLRYK 371
+ FV RY+ R++
Sbjct: 354 EHFVARYIDRHE 365
>Os06g0225100 Mitochodrial transcription termination factor-related family
protein
Length = 404
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 161/324 (49%), Gaps = 7/324 (2%)
Query: 51 HFMVQ-YLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKP 109
HF V+ YLV+ C L+P +HL S SRPDA +AFL GL+ A + V++ P
Sbjct: 48 HFAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFLAGLGLSAADIAAAVAYDP 107
Query: 110 ELLLSDVDATLDPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFLGS 169
LL ++VD TL P+ + LGL + +ARL + P ++ ++ +++ GS
Sbjct: 108 RLLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFR---RPTVISKLQYYVPLFGS 164
Query: 170 AKLLMKWLA-KTWLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQK 227
+ L++ L ++LL ++ +++ N++ LR G+ I P L+T +P R +
Sbjct: 165 FETLLQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPRLLTTSPERVRD 224
Query: 228 LVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRAPCL 287
+V + E GV S M+ A A+ +SE ++ E + P +
Sbjct: 225 MVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVV 284
Query: 288 VFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVGIGK 347
+ L R EFL++E G + +I P +LT SL +R+ PR V++ L+ G+ I
Sbjct: 285 LRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGL-IES 343
Query: 348 KANLGSVMRYPEDKFVERYVLRYK 371
+ S ++ E+ FVE+Y+ Y+
Sbjct: 344 DKSYYSAVQVTEEVFVEKYISPYE 367
>Os11g0206600 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 169/336 (50%), Gaps = 10/336 (2%)
Query: 42 FST---PSSTPPHFMVQYLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTR 98
FST P + PP + +YLV+ CGL+ + +HL S ++PDA LA L GL+R
Sbjct: 37 FSTAAGPDTAPPFSVEEYLVATCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSR 96
Query: 99 AQVREVVSWKPELLLSDVDATLDPKFRAVRA-LGLGRADVARLFALYPPALTYGIHTNLL 157
A + VV+ P LL + + + ++R +GL ADVAR F L A+ ++
Sbjct: 97 ADLAAVVAADPMLLCARA-RNVARRLHSLRDRVGLSDADVAR-FLLAGGAMGLR-KCDIA 153
Query: 158 PRVLFWIDFLGS-AKLLMKWLAKTWLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQP 215
PR+ FWI F+GS KLL +L +D +++ N++ L+ G+ I ++
Sbjct: 154 PRLEFWIGFVGSFDKLLPALKGNNGILMSDLDKVVKPNIALLQECGLSVCEIAKLSTLKW 213
Query: 216 TLITQTPARFQKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEE 275
T+++ +P R + V VE VP SS + + +SE C+E+
Sbjct: 214 TVLSLSPERVKASVLCVEKLVVPRSSDRFKHVLKSACWISEDMLAMKMEFLRSTLGCSED 273
Query: 276 EFDAMFRRAPCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVV 335
+ A +P + ++ L RK++FL++E G + IV P +L SL KRM PR V+
Sbjct: 274 KLRAAVCISPHIFYLSDKNLCRKIDFLISEVGLEREFIVERPWVLGYSLEKRMVPRHSVM 333
Query: 336 EALRSRGVGIGKKANLGSVMRYPEDKFVERYVLRYK 371
+ LR+ G+ + + S + Y E KFV RY+ YK
Sbjct: 334 KILRTMGL-MKDAVDFSSSLVYSEKKFVARYIDPYK 368
>Os11g0206200 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 164/327 (50%), Gaps = 9/327 (2%)
Query: 50 PHFMVQYLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKP 109
P + +YLV CGL+ + +HL S ++PDA LA L GL+RA + VV+ P
Sbjct: 60 PFSVEEYLVDTCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSRADLAAVVASDP 119
Query: 110 ELLLSDVDATLDPKFRAVRA-LGLGRADVARLFALYPPALTYGIHT-NLLPRVLFWIDFL 167
+LL + D + + ++R +GL + F L A GIH ++ R+ FWI FL
Sbjct: 120 QLLCARAD-NIARRIASLRDRVGLSDPQIGS-FLLAGGA--KGIHACDVASRLEFWIPFL 175
Query: 168 GSAKLLMKWLAKTWLLRYS-VDALLR-NLSTLRSLGVQQSRITTTVRMQPTLITQTPARF 225
GS + L++ L +L S ++ +++ N++ L+ G+ I R P + T P +
Sbjct: 176 GSFETLLRILKGNNVLVLSDLEKVIKPNIALLQECGLTVCDIAKMARFAPRMFTSNPKQV 235
Query: 226 QKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRAP 285
+ V R + GVP +SG + + N+SEGS C+ ++ + ++ P
Sbjct: 236 EGFVRRADELGVPRTSGQFKYMVGIFANISEGSATARMEYLSRSLGCSMDKLRSAVQKLP 295
Query: 286 CLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGV-G 344
++ + L K+EFL+ + + +++ P L T SL KR+ R +V+ L ++G+ G
Sbjct: 296 QILGLSETNLGSKIEFLVGKVRLEPEYLLKTPKLFTYSLEKRLVARHYIVQVLAAKGLKG 355
Query: 345 IGKKANLGSVMRYPEDKFVERYVLRYK 371
+ K S ++ E FV+ ++ +++
Sbjct: 356 LKKDVPFCSYVQLGESCFVKNFIDQHE 382
>Os06g0224600 Mitochodrial transcription termination factor-related family
protein
Length = 389
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 162/333 (48%), Gaps = 10/333 (3%)
Query: 43 STPSSTPPHFMVQYLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVR 102
+ P S+ P YLV+ CGL+ R +HL S S+PDA LAFL G+ R +
Sbjct: 35 TAPVSSKPFAAEDYLVAACGLTRAQAARASERISHLRSPSKPDAVLAFLAGLGIPRPDIA 94
Query: 103 EVVSWKPELLLSDVDATLDPKFRAVRALGLGRADVARLFALYP-PALTYGIHTNLLPRVL 161
V+ P LL + V+ L + + LG+ R+ +ARL L P + + TNL
Sbjct: 95 TAVAADPRLLCAGVEGNLAKRVAELGDLGIPRSQIARLVPLAKIPFRSSSLATNL----A 150
Query: 162 FWIDFLGSAKLLMKWLAK-TWLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQPT-LI 218
FW+ GS +++ L K + LL ++D +++ NL+ L+ G+ + + + + L
Sbjct: 151 FWLPVFGSLDSILRALRKNSSLLSANLDKVVKPNLAFLKQCGIDARDVASNPNLYSSRLF 210
Query: 219 TQTPARFQKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFD 278
T P + + V RVE G+ S ++ A+ +S+ + ++++
Sbjct: 211 TSNPMKLRDAVARVEELGMVRGSRVFHRGLVAVAFLSKEAV-ATKTRLLVELGFSQDDVS 269
Query: 279 AMFRRAPCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEAL 338
+FR+ P + +RR V FL + G + +I PVLL SL +R+ PR +++ L
Sbjct: 270 VIFRKMPSFLTASEKRIRRAVGFLKGDVGLEERYIARRPVLLLYSLERRLLPRYYLLKVL 329
Query: 339 RSRGVGIGKKANLGSVMRYPEDKFVERYVLRYK 371
R++G+ + K S E KF+ER+V Y+
Sbjct: 330 RTKGL-LDCKLCYYSTAALGEKKFIERFVHPYE 361
>Os06g0224650 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 157/333 (47%), Gaps = 10/333 (3%)
Query: 43 STPSSTPPHFMVQYLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVR 102
+ P S P + YLV+ CGL+ + +HL S S PDA +AFL GL R Q+
Sbjct: 38 TAPVSPKPFAVEDYLVAGCGLTRAEAAKASAKISHLSSPSNPDAVIAFLSDLGLPRPQIA 97
Query: 103 EVVSWKPELLLSDVDATLDPKFRAVRALGLGRADVARLFALYPPAL-TYGIHTNLLPRVL 161
++ P LL +DV+ L + + LG R+ +ARL L + + TNL
Sbjct: 98 AAIAADPRLLCADVEKNLAKRVGELGDLGFSRSQIARLLPLAGWCFRSSSLATNL----A 153
Query: 162 FWIDFLGSAKLLMKWL-AKTWLLRYSVDALLRN-LSTLRSLGVQQSRITTTVRMQPT-LI 218
FW+ GS ++K L LL V + L+ L G+ S + + M + L+
Sbjct: 154 FWLPVFGSFDKILKALRMNKNLLSPGVQKSAKPILAFLEQCGINASDVARSSTMYSSRLL 213
Query: 219 TQTPARFQKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFD 278
T P + V RVE G+ SS + A+ VS+ + ++++
Sbjct: 214 TANPEYLRDAVARVEELGLDRSSRRFHRGLVAVALVSKET-AARKIRLMEELGFSQDDLL 272
Query: 279 AMFRRAPCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEAL 338
+ R+ P + + +RR VEFL + G + +IV PVLL+ SL +R+ PR +++ L
Sbjct: 273 VIMRKLPNFLALSEKKIRRAVEFLKRDVGLEGRYIVQRPVLLSYSLERRLLPRHCLLKVL 332
Query: 339 RSRGVGIGKKANLGSVMRYPEDKFVERYVLRYK 371
R++G+ + + + S E KFV ++V Y+
Sbjct: 333 RTKGL-LNSELDYYSTAALSEKKFVNKFVHPYE 364
>Os06g0224700 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 171/356 (48%), Gaps = 20/356 (5%)
Query: 21 PPPRPPLAFLSSESRGHLVRRFSTPSSTPPHFMVQYLVSKCGLSPXXXXXXXPRFAHLDS 80
PPP P LS+ + P S P + +YLV+ CGL+ + ++L S
Sbjct: 26 PPPCPLRRLLST----------TAPVSPKPFAVDEYLVATCGLTRAQAAKASEKLSNLRS 75
Query: 81 ASRPDAALAFLRSQGLTRAQ-VREVVSWKPELLLSDVDATLDPKFRAVRALGLGRADVAR 139
S PDA LAFL GL+R + V+ P LL +DV ++L + + LGL R+ +AR
Sbjct: 76 PSNPDAVLAFLSDLGLSRPDGIAAAVAADPRLLCADVGSSLARRVDELGGLGLSRSQIAR 135
Query: 140 LFALYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMKWLA-KTWLLRYSVDALLR-NLSTL 197
L P A ++L R+ FW GS + ++K L LL +D + + NL+ L
Sbjct: 136 LL---PLAGRCFRSSSLATRLAFWHPVFGSFENILKALKMNAALLGSDLDKVAKPNLAFL 192
Query: 198 RSLGVQQSRIT-TTVRMQPT-LITQTPARFQKLVGRVEACGVPPSSGMYMWAFFALHNVS 255
G+ S +T TT+ + L T P Q V RVE GV + + +S
Sbjct: 193 AQCGINASDVTRTTLSLYSCRLFTVNPRFLQDAVARVEELGVARGWRTFHRVLSTVAFLS 252
Query: 256 EGSFRXXXXXXXXXXXCTEEEFDAMFRRAPCLVFVPAALLRRKVEFLMAEAGCDATHIVT 315
+ ++++F + RRAP ++ + +RR VEFL+ + G + ++I
Sbjct: 253 RETIASKMQLLDDLGF-SQDDFLVIVRRAPQVLRLSDGRIRRSVEFLIRDVGLEQSYIAQ 311
Query: 316 NPVLLTLSLGKRMAPRCRVVEALRSRGVGIGKKANLGSVMRYPEDKFVERYVLRYK 371
P LL SL +R+ PR +++ L+++G+ + + + E+KFV+R+V +K
Sbjct: 312 RPTLLAYSLERRLLPRHCLLKVLKAKGL-LNCDLSYYCIAAMSEEKFVQRFVDPFK 366
>Os06g0225200 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 167/352 (47%), Gaps = 13/352 (3%)
Query: 26 PLAFLSSESRGHLVRRFST---PSSTPPHFMVQYLVSKCGLSPXXXXXXXPRFAHLDSAS 82
P A +S S + FST P S P + YLV+ GL+ + +HL S S
Sbjct: 21 PTAAISPLSSLRRLLLFSTTAAPVSPEPFAVEDYLVATWGLTGAQARKASKKLSHLRSPS 80
Query: 83 RPDAALAFLRSQGLTRAQVREVVSWKPELLLSDVDATLDPKFRAVRALGLGRADVARLFA 142
+PDA LAFL GL ++ V + P L +DV++ L + + LGL R+ +ARL
Sbjct: 81 KPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLARRVDELGGLGLSRSQIARLV- 139
Query: 143 LYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMKWL-AKTWLLRYSVDALLR-NLSTLRSL 200
P ALT +++ + FW+ +GS ++K L + LL ++ +++ NL L+
Sbjct: 140 --PLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLLGSDLEKVVKPNLELLKQC 197
Query: 201 GVQQSRITTTVRMQPT-LITQTPARFQKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSF 259
G+ S T+ + + L T P + V RVE G+ SS M+ A+ S+ S
Sbjct: 198 GM--SDFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRMFRHGLIAVAFTSKESV 255
Query: 260 RXXXXXXXXXXXCTEEEFDAMFRRAPCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVL 319
+ +E + R+AP LV +R+ EFL + G + +I PVL
Sbjct: 256 -ARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVL 314
Query: 320 LTLSLGKRMAPRCRVVEALRSRGVGIGKKANLGSVMRYPEDKFVERYVLRYK 371
SL +R+ PR +++ LR +G+ + + + + E KFV ++V YK
Sbjct: 315 FLYSLERRLLPRHHLLKVLRMKGL-LDCELDYYNTAAMSERKFVRKFVDPYK 365
>Os05g0413000 Mitochodrial transcription termination factor-related family
protein
Length = 395
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 148/327 (45%), Gaps = 11/327 (3%)
Query: 53 MVQYLVSKCGLSPXXXXXXXPR-----FAHLDSASRPDAALAFLRSQGLTRAQVREVVSW 107
+V YL+S CGL+P A D AS DA +A LR G T A + V
Sbjct: 35 VVSYLISSCGLTPAAAARAAATSPWLPLASPDFASNADAVVALLRRYGFTDADISATVRA 94
Query: 108 KPELLLSDVDATLDPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFL 167
+L SD TL PK +R++G+ + R+ +L P L I ++L P + + L
Sbjct: 95 FSRILASDPARTLQPKLDYLRSVGITAPLLPRVVSLSPVILHRSIESHLAPLIASLREVL 154
Query: 168 GSAKLLMKWLAKT-WLLRYSVDA-LLRNLSTLRSL-GVQQSRITTTVRMQPTLITQTPAR 224
GS ++ L + + +R S A LR L LR + G+ S ++ V QP +I P R
Sbjct: 155 GSDSRIVTALRQMPFAMRCSPKATFLRTLPVLRDVHGLTPSELSKLVASQPGVILLGPGR 214
Query: 225 FQKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRA 284
++V V+ GV P S M+++ F A + + +++ M RR
Sbjct: 215 AGEIVQAVKDAGVEPGSPMFVYIFAAFSKLKAPTLE-NKFAIYRSLGFGKDDIAVMLRRL 273
Query: 285 PCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVG 344
P + L+R V FL +AG IV P LL+ SL A RC V+ LR G
Sbjct: 274 PNAAGISEERLKRTVGFLTGKAGLRREDIVAYPNLLSRSLDSH-ARRCAVLAVLRREGKP 332
Query: 345 IGKKANLGSVMRYPEDKFVERYVLRYK 371
G+ + V+ +F++ YV RY+
Sbjct: 333 EGQH-RVPHVLVASLARFMKAYVRRYE 358
>Os05g0403400 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 151/320 (47%), Gaps = 11/320 (3%)
Query: 56 YLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKPELLLSD 115
YLV+ GLSP R A S + +A ++ LR G + A + +V+ P LL+ +
Sbjct: 60 YLVASVGLSPAAAARIS-RKARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
Query: 116 VDATLDPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMK 175
D L PK +LG+ + ++R P L + +L+P V F +G+ L
Sbjct: 119 PDKILRPKLEYFASLGVVPSALSR-----APLLARSLEKHLVPCVEFIRGVVGTDANLCA 173
Query: 176 WLAKT-WLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQKLVGRVE 233
+++ W L +++ +R + +LR G+ ++ I+ V + + +T +P R + G +E
Sbjct: 174 AISRNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLE 233
Query: 234 ACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRAPCLVFVPAA 293
A +P S +++ F+AL + G++ E A FR P ++ A
Sbjct: 234 ALELPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKA-FREQPGILVFTAK 292
Query: 294 LLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRG--VGIGKKANL 351
++RK+ F + ++ +P+LLT SL K + P+C V+ L G G++ +L
Sbjct: 293 TIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDL 352
Query: 352 GSVMRYPEDKFVERYVLRYK 371
++ F ER+V +Y+
Sbjct: 353 LRPLQRSNISFFERFVRKYE 372
>Os06g0224900 Mitochodrial transcription termination factor-related family
protein
Length = 378
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 162/323 (50%), Gaps = 15/323 (4%)
Query: 50 PHFMVQYLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKP 109
P + YLV+ CGL+ + L S S+PDAA+AFL GL+R+ + V+ P
Sbjct: 43 PFAVEDYLVTTCGLTGDQARKAAKTLSRLRSPSKPDAAVAFLSGLGLSRSGIAAAVAADP 102
Query: 110 ELLLSDVDATLDPKFRAVRALGLGRADVARLFALYPPAL-TYGIHTNLLPRVLFWIDFLG 168
LL +DV+ L + + LG+ R+ +ARL L + + + TNL FW+ LG
Sbjct: 103 RLLCADVEKNLAKRVAELGELGISRSQIARLIPLARQSFRSSSLATNL----GFWLPVLG 158
Query: 169 S-AKLLMKWLAKTWLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQ 226
S +LM A +L V+ +++ NL+ L+ G+ T R+ PT++ + P Q
Sbjct: 159 SFENVLMALKANGAILGSDVEKVVKPNLALLQQCGIHVCDFPHT-RL-PTVLCRPPNHVQ 216
Query: 227 KLVGRVEACGVPPSSGMYMWAF--FALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRA 284
+ V R+ GVP S ++ A FA N + + + +E++ R+
Sbjct: 217 EAVARIGEFGVPQYSPVFRNALVPFAYQNKEKLAAKIGVLEMFGW---SEDDLSMTMRKG 273
Query: 285 PCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVG 344
P ++ + LR+ VEFL + + +I P++++ SL +R+ PR R++ L ++G+
Sbjct: 274 PVVMNMSVERLRKNVEFLTRDVKLETRYIARRPIMISYSLERRLLPRHRLLRFLSAKGLL 333
Query: 345 IGKKANLGSVMRYPEDKFVERYV 367
G + + S + E KF++++V
Sbjct: 334 DG-ELDFYSAVALTEKKFLDKFV 355
>Os02g0749900 Mitochodrial transcription termination factor-related family
protein
Length = 382
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 153/335 (45%), Gaps = 13/335 (3%)
Query: 43 STPSSTPPHFMVQ-YLVSKCGLSPXXXXXXXPRFAHLDSASRPDAAL---AFLRSQGLTR 98
ST + +P F+ + LV+ CGL+ R + S DAAL AFL L++
Sbjct: 31 STATLSPTRFVDEDALVAACGLTGAEALKASKRLQKV--PSNLDAALTFLAFLADFRLSK 88
Query: 99 AQVREVVSWKPELLLSDVDATLDPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLP 158
+ S P L VD TL + +R +GL ++ RL + P L+ + +
Sbjct: 89 DDIAAASSRYPRFLHLKVDETLTSQVARLRDIGLSTPEIGRLITIAPCILS---NPRTIS 145
Query: 159 RVLFWIDFLGSAKLLMKWL--AKTWLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQP 215
R+ F++ FLGS + L + L R ++++ ++ N++ L G+ I +
Sbjct: 146 RLEFYLSFLGSYPRVHSALRNNSSLLRRNNIESEVKPNIAFLEQCGLTTCDIAKILMSGS 205
Query: 216 TLITQTPARFQKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEE 275
++ P +++V + G+P S + +A A+ +S C++
Sbjct: 206 RILIMQPEHVKEIVACADKFGMPRESAGFRYALMAVTGISPVRVSAKLDFLRMVIGCSDA 265
Query: 276 EFDAMFRRAPCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVV 335
+ R P ++ L R +EFL AE G + +IV P LL S+ KR+ PR V+
Sbjct: 266 QLHIAVSRFPLILTYSEVKLSRSLEFLKAEVGLEPQYIVLRPALLGYSIQKRLMPRYHVM 325
Query: 336 EALRSRGVGIGKKANLGSVMRYPEDKFVERYVLRY 370
+ L +G+ + K + S+++ E+ F ++++L Y
Sbjct: 326 KVLNEKGL-LKKDTDFYSMVKIVEESFFKKFLLPY 359
>Os07g0423000 Mitochodrial transcription termination factor-related family
protein
Length = 408
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 140/327 (42%), Gaps = 8/327 (2%)
Query: 49 PPHFMVQYLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWK 108
P + +L + CGLS R L S + A +A R G + A + +V+
Sbjct: 64 PCSLTLHFLRNTCGLSEDEAAAAAAR-VRLRSTKKAHAIVALFRGIGFSAADIARLVTSN 122
Query: 109 PELLLSDVDATLDPKFRAVR-ALGLGRADVARLFALYPP-ALTYGIHTNLLPRVLFWIDF 166
P LL DATL PK R LGL A++ RL P L Y + + P L D
Sbjct: 123 PSLLSYRADATLMPKIEFFRRELGLTDAEIRRLVLANPYRVLRYSLKRCIRPNYLILRDL 182
Query: 167 LGSAK-LLMKWLAKTWLLRYSVDA-LLRNLSTLRSLGVQQSRITTTVRMQPTLITQTPAR 224
LGS K + L T L+ V LL + L+ G I V P + +R
Sbjct: 183 LGSDKNVTAAVLQSTDLIHGDVRGILLPKIKILQDYGATNDVIVKLVTTHPRALMHRASR 242
Query: 225 FQKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRA 284
F++ + ++ GV PSSGM+ ++F + ++ E+ +A R
Sbjct: 243 FEESLAAMKELGVRPSSGMFPYSFGLFARLHPRKWKGRMDNFLSLGWTKEQVIEAFVRHP 302
Query: 285 PCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVG 344
C+ V ++ +FL + ++ +P++L+ S KR+ PRC V+ L SR G
Sbjct: 303 YCMS-VSNDKVKLIWQFLAKKLRWTTDYVARSPMVLSFSYDKRILPRCTVLNLLASR--G 359
Query: 345 IGKKANLGSVMRYPEDKFVERYVLRYK 371
I + S + E KF E+YV Y+
Sbjct: 360 IFNRDIKTSHLVLGEKKFKEKYVTPYQ 386
>Os11g0206300 Mitochodrial transcription termination factor-related family
protein
Length = 458
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 14/280 (5%)
Query: 55 QYLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKPELLLS 114
YLV+ CGL+ + +HL SA+ PDA LA L GL+RA + VV+ P LL +
Sbjct: 50 DYLVATCGLTGDQALKASKKISHLRSAANPDAVLAVLSGVGLSRADLAAVVASDPHLLCA 109
Query: 115 DVDATLDPKFRAVRA-LGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFL-GSAKL 172
D + + ++R +GL + R F L A+ ++ R+ FWI FL GS +
Sbjct: 110 RPD-NVSRRVTSLRDRVGLSDPQIGR-FLLAGGAMAVR-KCDVAERLEFWIPFLGGSFET 166
Query: 173 LMKWLAK-TWLLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQKLVG 230
L+K L + ++R V+ +++ N++ + G+ + V+M L T P R + V
Sbjct: 167 LLKMLRRNNAIVRADVEKVIKPNIALFQESGLT---VRDIVKMPGWLFTFNPKRVEAAVE 223
Query: 231 RVEACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRAPCLVFV 290
R GV +S + N++EG+ C+ ++ + M + P ++ +
Sbjct: 224 RTGKLGVELASSRLKYMLSIAGNITEGNASARMKYLSSTLNCSMDKVEYMVGKMPTIITL 283
Query: 291 PAALLRRKVEFLMAEAGCDATHI----VTNPVLLTLSLGK 326
LR K+EFL + C I P +L +S K
Sbjct: 284 SEEKLRSKIEFLSSTLNCCVDKIGHMVCKEPFILAISEEK 323
>Os06g0224400 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 140/318 (44%), Gaps = 8/318 (2%)
Query: 55 QYLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVREVVSWKPELLLS 114
YLV CGL+ + +HL S S PDA LAFL GL+R + VV P + +
Sbjct: 48 DYLVDSCGLTRARAKKASGKLSHLRSPSNPDAVLAFLSGLGLSRPDIAAVVVNDPLFICA 107
Query: 115 DVDATLDPKFRAVRALGLGRADVARLFALYPPALTYGIHTNLLPRVLFWIDFLGSAKLLM 174
VD TL + + LGL R+ +ARL P + +L PR+ F + GS +
Sbjct: 108 RVDKTLATRVAELTDLGLSRSQIARLI---PVVRSLFRCKSLAPRLAFLLTVFGSFDRCL 164
Query: 175 KWLAKTW-LLRYSVDALLR-NLSTLRSLGVQQSRITTTVRMQPTLITQTPARFQKLVGRV 232
+ + + +L +V+A+++ NL+ L+ G+ + + +I++ ++ V
Sbjct: 165 EVIKTNYGVLSSNVEAVIKPNLAVLKECGISIAD-RPSYAFASRVISRPTKHLEEAVVLA 223
Query: 233 EACGVPPSSGMYMWAFFALHNVSEGSFRXXXXXXXXXXXCTEEEFDAMFRRAPCLVFVPA 292
G + ++ A + + ++++ R P ++ +
Sbjct: 224 NEFGAKQGTRVFTNAVMIFGILGQEKL-AKKLEFFKKLGWSQDDLSLAVRSMPHILAMKE 282
Query: 293 ALLRRKVEFLMAEAGCDATHIVTNPVLLTLSLGKRMAPRCRVVEALRSRGVGIGKKANLG 352
+RR ++FL + G + +I P L S+ +R+ PR ++ L+ G+ + +
Sbjct: 283 ERMRRGMKFLTEDVGLEIPYIARRPALTMYSIERRLLPRHCLINVLKGNGL-LKANYDFY 341
Query: 353 SVMRYPEDKFVERYVLRY 370
++ D F+E++V Y
Sbjct: 342 NISVISNDDFMEKFVQPY 359
>Os06g0224500 Mitochodrial transcription termination factor-related family
protein
Length = 330
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%)
Query: 46 SSTPPHFMVQYLVSKCGLSPXXXXXXXPRFAHLDSASRPDAALAFLRSQGLTRAQVREVV 105
+ P + YLV CGL+ + +HL S S+PDA LA L GLTR + V
Sbjct: 38 GAAEPFAVEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAV 97
Query: 106 SWKPELLLSDVDATLDPKFRAVRALGLGRADVARLFAL 143
+ P LL + VD TLD + + +GL R+ +ARL L
Sbjct: 98 ASDPRLLCARVDRTLDARVAELGGIGLSRSQIARLIPL 135
>Os05g0403600 Mitochodrial transcription termination factor-related family
protein
Length = 399
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 16/353 (4%)
Query: 23 PRPPLAFLSSESRGHLVRRFSTPSSTPPHFMVQYLVSKCGLSPXXX--XXXXPRFAHLDS 80
P+ L F S S V S P P V YLVS CGL P R + S
Sbjct: 31 PQAALLFHSYSSTA--VTGGSDPEPCPD--TVSYLVS-CGLPPAVARHTAANTRGLRIRS 85
Query: 81 ASRPDAALAFLRSQGLTRAQVREVVSWKPELLLSDVDATLDPKFRAVRALGLGRADVARL 140
+ DA LRS G + A V + P LL D D + PK +G + ++
Sbjct: 86 TEKADAVRTLLRSYGFSDADVARIARSAPLLLTVDPDRIIRPKLEFFATMGFQPSKLS-- 143
Query: 141 FALYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMKWLAKT-WLLRYSVDALLR-NLSTLR 198
P L + +L+P + F +GS + + ++ L S+D +R + L
Sbjct: 144 --TAPLLLARSLEKHLVPTIQFLRSIIGSDDGIRRGFSRIPRALLVSLDNCMRPAVEALH 201
Query: 199 SLGVQ-QSRITTTVRMQPTLITQTPARFQKLVGRVEACGVPPSSGMYMWAFFALHNVSEG 257
G+ + ++ + +Q ++ +P R ++ ++A G+ + G + +F A+ ++
Sbjct: 202 RHGLTGREDVSKVLVLQMGVLMLSPVRIGEIFEDLKAMGMSITDGRFANSFRAMCSMRRA 261
Query: 258 SFRXXXXXXXXXXXCTEEEFDAMFRRAPCLVFVPAALLRRKVEFLMAEAGCDATHIVTNP 317
++ E F+A F++ P + +++ F + ++ +P
Sbjct: 262 TWLRKVALYRSFGLSESEVFEA-FKKQPTALLGADETIKKNASFFRDALKLEMREVMVHP 320
Query: 318 VLLTLSLGKRMAPRCRVVEALRSRGVGIGKKANLGSVMRYPEDKFVERYVLRY 370
V++ S K + PRC V+ L G I L + F RYV R+
Sbjct: 321 VVMAYSFEKTILPRCAVLSVLMREG-KINPDIQLLHALLGSAKTFSGRYVDRF 372
>Os08g0528700 Mitochodrial transcription termination factor-related family
protein
Length = 190
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 4/168 (2%)
Query: 207 ITTTVRMQPT---LITQTPARFQKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSFRXXX 263
+ V+M T ++T +P R + +V + E +P S + A A+ +EG
Sbjct: 2 VCDIVQMSQTSARVLTFSPERLKVIVQQAEKLRMPGCSWAFKNAVGAVARSNEGIVNARM 61
Query: 264 XXXXXXXXCTEEEFDAMFRRAPCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVLLTLS 323
C+ E+ + + P ++ + + L K+EFL+ + G + +I+ PVLLT S
Sbjct: 62 EFLSSSLGCSMEKLRSAVCKCPQILGLSESKLHSKIEFLVGKVGLEPDYILQRPVLLTYS 121
Query: 324 LGKRMAPRCRVVEALRSRGVGIGKKANLGSVMRYPEDKFVERYVLRYK 371
L KR+ PR VVE L +G+ I K + + + FV RY+ ++
Sbjct: 122 LEKRLLPRHYVVEVLLVKGL-IKKTVDFYGCVCVSNEDFVARYIDHHE 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,358,651
Number of extensions: 480587
Number of successful extensions: 2110
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 2065
Number of HSP's successfully gapped: 19
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)