Os06g0225100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os06g0225100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.23 | 0.365 | 8.81 | 0.817 | 0.622 | -0.693 | -0.737 | 3.06 | -0.432 | 19.5 | 18.92 | 1854 | -- | -- |
| 67.28 | 0.382 | 8.9 | 0.143 | 0.559 | -0.743 | -0.611 | -- | -0.594 | 19.8 | 13.04 | 6910 | -- | -- |
| 61.4 | 0.365 | 8.81 | 0.835 | 0.61 | -0.682 | -- | 3.06 | -0.435 | 19.2 | 18.58 | 1746 | -- | -- |
| 68.27 | 0.385 | 8.9 | 0.144 | 0.589 | -0.712 | -- | -- | -0.617 | 19.3 | 14.21 | 6189 | -- | -- |
| 79.02 | 0.414 | 8.78 | 0.874 | -- | -0.648 | -- | 2.79 | -0.438 | -- | 17.9 | 2902 | -- | -- |
| 76.83 | 0.411 | 8.94 | -0.231 | 0.565 | -- | -0.611 | -- | -0.791 | 19.5 | -- | -- | -- | -- |
| 77.74 | 0.413 | 8.94 | -0.215 | 0.57 | -- | -- | -- | -0.791 | 19.2 | -- | -- | -- | -- |
| 85.08 | 0.43 | 8.88 | 0.17 | -- | -0.704 | -- | -- | -0.599 | -- | 14.67 | 7118 | -- | -- |
| 68.7 | 0.386 | 8.91 | -- | 0.583 | -0.636 | -- | -- | -0.646 | 19.3 | 14.4 | 6163 | -- | -- |
| 94.93 | 0.455 | 8.93 | -0.225 | -- | -- | -- | -- | -0.801 | -- | -- | -- | -- | -- |
| 78.96 | 0.416 | 8.93 | -- | 0.572 | -- | -- | -- | -0.767 | 19.2 | -- | -- | -- | -- |
| 85.37 | 0.43 | 8.9 | -- | -- | -0.652 | -- | -- | -0.663 | -- | 14.5 | 5712 | -- | -- |
| 96.27 | 0.458 | 8.92 | -- | -- | -- | -- | -- | -0.776 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.60 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 3 | 56.71 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 5 | 56.87 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 6 | 56.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 7 | 56.94 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 9 | 57.02 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 10 | 57.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 20 | 57.13 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 28 | 57.29 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 31 | 57.32 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 32 | 57.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 36 | 57.38 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 38 | 57.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 39 | 57.43 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 47 | 57.52 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 54 | 57.61 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 55 | 57.61 | wind | 7 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 59 | 57.65 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 80 | 57.78 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 82 | 57.80 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 83 | 57.82 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 95 | 57.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 99 | 57.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 107 | 57.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 170 | 58.24 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 182 | 58.28 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 11 |
| 190 | 58.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 225 | 58.38 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 232 | 58.41 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 236 | 58.42 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 250 | 58.44 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 311 | 58.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 324 | 58.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 332 | 58.54 | temperature | 15 | 43200 | < th | dose dependent | sin | 8 | NA |
| 379 | 58.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 391 | 58.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 401 | 58.59 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 403 | 58.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 404 | 58.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 16 |
| 434 | 58.62 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 453 | 58.63 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 462 | 58.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 471 | 58.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 18 |
| 472 | 58.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 485 | 58.66 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 503 | 58.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 552 | 58.71 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 554 | 58.71 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 683 | 58.80 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 692 | 58.80 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 703 | 58.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 722 | 58.83 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 728 | 58.83 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 737 | 58.85 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 749 | 58.86 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 752 | 58.86 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 771 | 58.88 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 806 | 58.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 850 | 58.93 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 853 | 58.93 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 861 | 58.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 863 | 58.94 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 867 | 58.94 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 13 |
| 872 | 58.94 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 880 | 58.95 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 14 | NA |
| 893 | 58.95 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 929 | 58.97 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 952 | 58.98 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 971 | 58.99 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 1 |