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Os11g0206200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mitochodrial transcription termination factor-related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.67 (0.0224) R2 : 0.00285
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0539 (0.0472) R2dN8 : 0.00368 R2N8 : 0.00285
σ : 0.422
deviance : 81.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.73 0.335 9.54 1.36 0.586 -0.957 -1.12 4.9 0.225 19.1 26.3 1154 -- --
55.2 0.346 9.64 0.284 0.573 -0.464 -0.942 -- 0.152 18.7 24.9 9648 -- --
53.52 0.341 9.54 1.43 0.568 -0.931 -- 5.09 0.19 18.5 27.02 1238 -- --
57.28 0.352 9.64 0.325 0.546 -0.425 -- -- 0.128 18.2 25.4 8383 -- --
69.72 0.389 9.52 1.43 -- -0.915 -- 4.77 0.204 -- 26.75 1292 -- --
63.01 0.372 9.68 0.145 0.562 -- -0.899 -- -0.0234 18.4 -- -- -- --
64.81 0.377 9.68 0.159 0.562 -- -- -- -0.0253 18 -- -- -- --
72.52 0.397 9.63 0.334 -- -0.453 -- -- 0.131 -- 25.49 8496 -- --
59.78 0.36 9.65 -- 0.546 -0.356 -- -- 0.0815 18.2 26.4 8377 -- --
81.2 0.421 9.67 0.142 -- -- -- -- -0.0381 -- -- -- -- --
65.47 0.379 9.68 -- 0.56 -- -- -- -0.043 18 -- -- -- --
74.97 0.403 9.64 -- -- -0.38 -- -- 0.0711 -- 26.5 8467 -- --
81.73 0.422 9.67 -- -- -- -- -- -0.0539 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.52 wind 7 14400 > th dose dependent rect. 10 2
2 50.57 wind 7 14400 > th dose independent rect. 11 1
3 50.64 wind 7 14400 < th dose independent rect. 11 1
4 50.66 wind 9 14400 > th dose independent rect. 6 6
7 50.75 wind 9 14400 > th dose independent rect. 9 3
9 50.87 humidity 80 43200 < th dose dependent rect. 5 1
16 51.14 wind 1 43200 < th dose dependent rect. 1 1
20 51.17 wind 7 14400 > th dose dependent rect. 5 8
26 51.40 wind 9 43200 > th dose independent rect. 9 6
29 51.43 temperature 25 720 > th dose dependent rect. 17 4
35 51.49 wind 1 14400 < th dose dependent rect. 9 1
42 51.59 humidity 50 1440 < th dose independent rect. 16 1
43 51.59 humidity 50 1440 < th dose dependent rect. 16 1
44 51.60 wind 9 14400 < th dose independent rect. 5 7
45 51.60 wind 9 43200 > th dose independent rect. 2 13
46 51.60 wind 9 43200 > th dose independent rect. 24 15
47 51.60 humidity 80 43200 < th dose dependent rect. 22 1
49 51.62 humidity 80 43200 < th dose dependent rect. 22 8
52 51.64 humidity 80 43200 < th dose dependent rect. 24 1
57 51.65 humidity 80 43200 < th dose dependent rect. 24 6
63 51.68 humidity 80 43200 < th dose dependent rect. 22 3
64 51.69 wind 1 14400 > th dose independent rect. 9 1
67 51.70 wind 9 43200 < th dose independent rect. 2 13
74 51.73 wind 9 43200 < th dose independent rect. 9 6
75 51.73 wind 9 43200 < th dose independent rect. 24 15
83 51.76 humidity 80 43200 > th dose independent rect. 4 1
106 51.85 temperature 25 1440 > th dose dependent rect. 20 2
112 51.88 wind 1 14400 < th dose independent rect. 9 1
134 51.90 humidity 50 1440 > th dose independent rect. 16 2
140 51.91 humidity 50 1440 > th dose independent rect. 16 4
146 51.94 radiation 40 43200 < th dose independent rect. 10 1
155 51.96 wind 9 14400 > th dose independent rect. 23 13
157 51.97 humidity 50 1440 > th dose independent rect. 16 10
179 51.99 humidity 50 1440 > th dose independent rect. 16 12
182 52.00 humidity 50 1440 > th dose independent rect. 16 6
189 52.01 humidity 80 43200 < th dose independent rect. 4 1
227 52.09 temperature 25 720 > th dose dependent rect. 16 17
231 52.10 wind 7 14400 > th dose dependent rect. 24 13
272 52.17 humidity 80 43200 < th dose independent rect. 24 6
282 52.19 wind 1 43200 > th dose dependent rect. 11 2
283 52.19 wind 9 43200 < th dose dependent rect. 11 2
326 52.25 humidity 80 43200 < th dose independent rect. 24 1
336 52.27 radiation 40 43200 > th dose independent rect. 10 1
368 52.30 temperature 25 270 < th dose independent rect. 1 4
444 52.41 wind 9 14400 < th dose independent sin 6 NA
462 52.47 temperature 25 720 > th dose dependent sin 11 NA
514 52.54 humidity 90 14400 > th dose dependent rect. 15 15
526 52.55 humidity 90 14400 > th dose dependent rect. 19 11
572 52.63 humidity 90 14400 > th dose dependent rect. 2 15
574 52.63 humidity 90 14400 > th dose dependent rect. 9 21
575 52.64 temperature 25 1440 < th dose independent rect. 20 3
582 52.65 wind 3 43200 < th dose independent rect. 2 2
596 52.67 humidity 50 1440 < th dose independent sin 11 NA
597 52.67 temperature 25 1440 > th dose independent rect. 20 3
619 52.70 radiation 40 43200 > th dose dependent rect. 10 1
647 52.76 humidity 90 14400 > th dose dependent rect. 3 8
652 52.76 humidity 90 14400 > th dose dependent rect. 19 15
653 52.76 humidity 90 14400 > th dose dependent rect. 20 21
657 52.77 humidity 90 14400 > th dose dependent rect. 3 11
662 52.78 wind 3 43200 > th dose independent rect. 2 2
676 52.79 radiation 1 14400 < th dose dependent rect. 21 8
680 52.79 humidity 90 14400 > th dose dependent rect. 19 18
689 52.80 humidity 90 14400 > th dose dependent rect. 24 22
703 52.82 humidity 90 14400 > th dose dependent sin 11 NA
725 52.83 humidity 90 14400 > th dose dependent rect. 15 19
730 52.84 temperature 25 1440 > th dose independent rect. 21 1
764 52.86 radiation 20 43200 < th dose independent rect. 8 1
799 52.87 radiation 40 43200 < th dose independent rect. 15 21
801 52.87 temperature 25 1440 > th dose dependent rect. 11 12
852 52.90 radiation 10 43200 > th dose independent rect. 9 1
886 52.91 humidity 90 14400 > th dose dependent no NA NA
899 52.92 wind 9 14400 > th dose independent sin 6 NA
970 52.97 humidity 90 14400 > th dose dependent sin 3 NA
985 52.98 temperature 25 1440 > th dose dependent rect. 11 21
992 53.00 wind 3 43200 > th dose independent rect. 11 1