Os11g0246100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os11g0246100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.49 | 0.505 | 8.71 | 1.83 | 2.11 | 1.04 | -0.978 | -1.07 | 0.743 | 22.1 | 82.63 | 829 | -- | -- |
| 117.31 | 0.504 | 8.71 | 1.76 | 2.11 | 1.03 | -0.564 | -- | 0.73 | 22.1 | 82.22 | 827 | -- | -- |
| 118.25 | 0.506 | 8.71 | 1.81 | 2.11 | 1.04 | -- | -0.385 | 0.737 | 22.1 | 82.65 | 828 | -- | -- |
| 118.57 | 0.507 | 8.71 | 1.78 | 2.11 | 1.03 | -- | -- | 0.733 | 22.1 | 82.28 | 828 | -- | -- |
| 239.54 | 0.725 | 8.66 | 1.82 | -- | 0.699 | -- | -0.537 | 0.685 | -- | 82.65 | 828 | -- | -- |
| 138.46 | 0.552 | 8.7 | 1.77 | 1.6 | -- | -0.583 | -- | 0.681 | 22.4 | -- | -- | -- | -- |
| 139.84 | 0.554 | 8.7 | 1.79 | 1.6 | -- | -- | -- | 0.683 | 22.4 | -- | -- | -- | -- |
| 241.5 | 0.727 | 8.66 | 1.81 | -- | 0.698 | -- | -- | 0.684 | -- | 82.65 | 828 | -- | -- |
| 203.15 | 0.664 | 8.69 | -- | 2.13 | 1.23 | -- | -- | 0.65 | 22.4 | 82 | 942 | -- | -- |
| 296.72 | 0.805 | 8.66 | 1.82 | -- | -- | -- | -- | 0.688 | -- | -- | -- | -- | -- |
| 224.46 | 0.701 | 8.75 | -- | 1.61 | -- | -- | -- | 0.483 | 22.5 | -- | -- | -- | -- |
| 321.73 | 0.835 | 8.75 | -- | -- | 1.51 | -- | -- | 0.277 | -- | 58.72 | 47520 | -- | -- |
| 383.87 | 0.915 | 8.71 | -- | -- | -- | -- | -- | 0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.40 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 2 | 111.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 4 | 111.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 27 | 113.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 31 | 113.56 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 38 | 113.76 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 48 | 114.23 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 63 | 114.55 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 105 | 115.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 123 | 115.77 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 129 | 115.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 132 | 115.82 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 159 | 116.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 163 | 116.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 205 | 116.55 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 18 |
| 212 | 116.64 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 15 |
| 228 | 116.81 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 21 |
| 235 | 116.88 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 22 |
| 242 | 116.98 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 278 | 117.28 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 281 | 117.30 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 282 | 117.31 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 285 | 117.32 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 292 | 117.37 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 22 |
| 297 | 117.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 301 | 117.44 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 319 | 117.46 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 394 | 117.81 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 396 | 117.82 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 23 |
| 422 | 117.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 459 | 118.12 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 474 | 118.18 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 534 | 118.40 | humidity | 70 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 543 | 118.45 | humidity | 70 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 610 | 118.68 | humidity | 70 | 1440 | > th | dose dependent | sin | 2 | NA |
| 691 | 118.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 709 | 119.03 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 15 |
| 716 | 119.07 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 753 | 119.17 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 776 | 119.23 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 790 | 119.25 | humidity | 70 | 720 | > th | dose dependent | sin | 14 | NA |
| 803 | 119.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 818 | 119.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 834 | 119.36 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 842 | 119.39 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 941 | 119.62 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 18 |