Os05g0413000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os05g0413000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.67 | 0.49 | 8.89 | 3.24 | 0.647 | -1.8 | -0.606 | -6.9 | 0.464 | 18.1 | 0.788 | 4171 | -- | -- |
| 129.51 | 0.53 | 9.06 | 2.39 | 0.663 | -0.959 | 0.172 | -- | 0.168 | 18 | 7.177 | 11137 | -- | -- |
| 109.22 | 0.487 | 8.89 | 3.26 | 0.706 | -1.82 | -- | -6.84 | 0.468 | 18.5 | 0.6664 | 4204 | -- | -- |
| 122.8 | 0.516 | 9.08 | 2.17 | 0.68 | -0.992 | -- | -- | 0.0764 | 19.1 | 6.235 | 12582 | -- | -- |
| 123.3 | 0.517 | 8.9 | 2.93 | -- | -1.96 | -- | -5.94 | 0.401 | -- | 1.08 | 5423 | -- | -- |
| 142.4 | 0.559 | 9.02 | 2.35 | 0.852 | -- | 1.04 | -- | 0.389 | 20.1 | -- | -- | -- | -- |
| 145.19 | 0.564 | 9.02 | 2.32 | 0.865 | -- | -- | -- | 0.392 | 19.7 | -- | -- | -- | -- |
| 141.64 | 0.554 | 9.09 | 2.14 | -- | -1.38 | -- | -- | -0.03 | -- | 5.945 | 12406 | -- | -- |
| 132.24 | 0.536 | 9.23 | -- | 0.857 | -2 | -- | -- | -0.549 | 19.6 | 1.996 | 47520 | -- | -- |
| 185.54 | 0.636 | 9 | 2.31 | -- | -- | -- | -- | 0.379 | -- | -- | -- | -- | -- |
| 287.59 | 0.793 | 9.07 | -- | 0.848 | -- | -- | -- | 0.133 | 19.9 | -- | -- | -- | -- |
| 171.58 | 0.61 | 9.21 | -- | -- | -2 | -- | -- | -0.56 | -- | 2.007 | 47520 | -- | -- |
| 326.72 | 0.844 | 9.05 | -- | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.55 | humidity | 70 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 6 | 107.61 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 9 | 108.21 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 11 | 108.51 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 15 | 109.02 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 16 | 109.06 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 6 |
| 19 | 109.10 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 12 |
| 22 | 109.12 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 28 | 109.18 | temperature | 20 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 37 | 109.34 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 41 | 109.36 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 43 | 109.37 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 45 | 109.38 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 51 | 109.40 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 55 | 109.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 17 |
| 58 | 109.45 | temperature | 20 | 14400 | < th | dose dependent | sin | 1 | NA |
| 80 | 109.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 113 | 110.17 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 123 | 110.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 168 | 110.56 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 194 | 110.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 204 | 110.75 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 226 | 110.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 240 | 110.97 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 241 | 110.97 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 242 | 110.97 | temperature | 20 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 295 | 111.12 | temperature | 20 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 327 | 111.25 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 368 | 111.40 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 424 | 111.61 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 433 | 111.63 | radiation | 1 | 4320 | < th | dose dependent | sin | 13 | NA |
| 434 | 111.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 449 | 111.68 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 451 | 111.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 463 | 111.73 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 466 | 111.74 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 509 | 111.87 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 516 | 111.88 | temperature | 25 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 538 | 111.95 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 19 |
| 544 | 111.97 | radiation | 1 | 4320 | < th | dose dependent | rect. | 11 | 19 |
| 552 | 112.00 | temperature | 25 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 554 | 112.00 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 558 | 112.01 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 569 | 112.05 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 584 | 112.10 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 594 | 112.10 | temperature | 20 | 14400 | < th | dose dependent | sin | 16 | NA |
| 601 | 112.14 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 607 | 112.16 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 609 | 112.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 620 | 112.20 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 679 | 112.36 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 736 | 112.57 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 742 | 112.59 | humidity | 60 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 750 | 112.61 | wind | 1 | 43200 | < th | dose independent | sin | 11 | NA |
| 818 | 112.80 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 822 | 112.81 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 825 | 112.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 16 |
| 838 | 112.88 | temperature | 25 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 872 | 112.97 | temperature | 20 | 14400 | < th | dose independent | sin | 1 | NA |
| 875 | 112.97 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 876 | 112.97 | temperature | 25 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 889 | 113.01 | temperature | 25 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 892 | 113.01 | radiation | 1 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 897 | 113.02 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 906 | 113.02 | radiation | 1 | 4320 | < th | dose dependent | rect. | 20 | 10 |
| 941 | 113.06 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 943 | 113.06 | radiation | 1 | 4320 | < th | dose dependent | rect. | 23 | 7 |
| 988 | 113.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 1 |