Os02g0749900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os02g0749900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.04 | 0.27 | 9.72 | 0.182 | 0.433 | 0.547 | -0.601 | 2.18 | -0.263 | 7.35 | 9.856 | 8 | -- | -- |
| 36.22 | 0.28 | 9.76 | -0.121 | 0.441 | 0.576 | -0.625 | -- | -0.353 | 6.72 | 19 | 7 | -- | -- |
| 33.83 | 0.271 | 9.72 | 0.171 | 0.459 | 0.546 | -- | 2.21 | -0.259 | 7.31 | 11.17 | 75 | -- | -- |
| 37.2 | 0.284 | 9.76 | -0.127 | 0.445 | 0.541 | -- | -- | -0.358 | 7.02 | 19.48 | 10 | -- | -- |
| 43.89 | 0.31 | 9.73 | 0.16 | -- | 0.48 | -- | 1.96 | -0.254 | -- | 11.17 | 75 | -- | -- |
| 41.11 | 0.301 | 9.74 | -0.00773 | 0.413 | -- | -0.323 | -- | -0.263 | 8.56 | -- | -- | -- | -- |
| 41.38 | 0.301 | 9.74 | -0.0166 | 0.412 | -- | -- | -- | -0.262 | 8.86 | -- | -- | -- | -- |
| 46.75 | 0.32 | 9.76 | -0.105 | -- | 0.45 | -- | -- | -0.331 | -- | 18.8 | 7 | -- | -- |
| 37.61 | 0.286 | 9.75 | -- | 0.433 | 0.483 | -- | -- | -0.332 | 7.25 | 20.26 | 16 | -- | -- |
| 51.05 | 0.334 | 9.75 | -0.0165 | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
| 41.39 | 0.301 | 9.74 | -- | 0.412 | -- | -- | -- | -0.261 | 8.87 | -- | -- | -- | -- |
| 47 | 0.319 | 9.76 | -- | -- | 0.421 | -- | -- | -0.316 | -- | 18.9 | 5 | -- | -- |
| 51.05 | 0.334 | 9.75 | -- | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.64 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 30.74 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 3 | 30.96 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 4 | 31.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 5 | 31.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 7 | 31.25 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 18 | 31.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 22 | 31.63 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 23 | 31.63 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 24 | 31.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 27 | 31.71 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 32 | 31.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 43 | 31.86 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 51 | 31.91 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 61 | 31.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 74 | 31.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 77 | 31.98 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 79 | 31.99 | wind | 9 | 14400 | > th | dose dependent | rect. | 24 | 14 |
| 98 | 32.07 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 11 |
| 143 | 32.20 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 188 | 32.35 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 197 | 32.37 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 277 | 32.61 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 21 |
| 325 | 32.72 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 332 | 32.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 376 | 32.80 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 400 | 32.83 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 424 | 32.86 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 16 |
| 443 | 32.89 | wind | 9 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 488 | 32.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 524 | 33.00 | temperature | 15 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 565 | 33.07 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 587 | 33.12 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 660 | 33.22 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 677 | 33.24 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 700 | 33.26 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 706 | 33.27 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 22 |
| 716 | 33.28 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 736 | 33.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 742 | 33.32 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 12 |
| 763 | 33.34 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 22 |
| 796 | 33.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 825 | 33.41 | wind | 9 | 14400 | > th | dose dependent | sin | 4 | NA |
| 865 | 33.46 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 891 | 33.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 914 | 33.52 | wind | 9 | 14400 | > th | dose independent | sin | 4 | NA |
| 917 | 33.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 927 | 33.53 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 942 | 33.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 955 | 33.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 982 | 33.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 995 | 33.60 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |