Os06g0224500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os06g0224500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.63 | 0.264 | 8.64 | 0.25 | 0.0209 | -0.782 | -0.467 | -0.121 | 0.149 | 22.5 | 25.3 | 96 | -- | -- |
| 31.65 | 0.262 | 8.64 | 0.231 | 0.0195 | -0.772 | -0.489 | -- | 0.147 | 22.7 | 25.3 | 95 | -- | -- |
| 32.38 | 0.265 | 8.64 | 0.318 | 0.0362 | -0.792 | -- | -0.408 | 0.15 | 1.7 | 25.4 | 102 | -- | -- |
| 32.58 | 0.266 | 8.64 | 0.243 | 0.0446 | -0.79 | -- | -- | 0.136 | 2.2 | 25.59 | 93 | -- | -- |
| 32.45 | 0.265 | 8.63 | 0.309 | -- | -0.792 | -- | -0.372 | 0.16 | -- | 25.3 | 95 | -- | -- |
| 40.79 | 0.299 | 8.6 | 0.418 | 0.103 | -- | 0.46 | -- | 0.299 | 12.5 | -- | -- | -- | -- |
| 41.56 | 0.302 | 8.6 | 0.437 | 0.115 | -- | -- | -- | 0.303 | 14.3 | -- | -- | -- | -- |
| 32.68 | 0.266 | 8.64 | 0.253 | -- | -0.761 | -- | -- | 0.148 | -- | 25.38 | 98 | -- | -- |
| 33.99 | 0.272 | 8.65 | -- | 0.081 | -0.894 | -- | -- | 0.089 | 2.91 | 25.82 | 97 | -- | -- |
| 42.34 | 0.304 | 8.6 | 0.433 | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
| 46.6 | 0.319 | 8.61 | -- | 0.106 | -- | -- | -- | 0.254 | 14.2 | -- | -- | -- | -- |
| 34.22 | 0.272 | 8.65 | -- | -- | -0.853 | -- | -- | 0.106 | -- | 25.3 | 113 | -- | -- |
| 47.27 | 0.321 | 8.61 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.11 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 3 | 31.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 6 | 31.69 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 9 | 31.70 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 10 | 31.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 12 | 31.72 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 13 | 31.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 31.84 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 16 | 31.85 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 18 | 31.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 29 | 31.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 66 | 32.13 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 91 | 32.30 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 99 | 32.36 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 102 | 32.37 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 127 | 32.49 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 148 | 32.55 | wind | 9 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 217 | 32.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 228 | 32.84 | wind | 9 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 235 | 32.85 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 259 | 32.94 | wind | 9 | 14400 | < th | dose independent | sin | 4 | NA |
| 269 | 33.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 306 | 33.13 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 324 | 33.19 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 351 | 33.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 359 | 33.32 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 430 | 33.47 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 434 | 33.49 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 440 | 33.50 | wind | 9 | 14400 | > th | dose independent | rect. | 21 | 17 |
| 455 | 33.53 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 23 |
| 494 | 33.60 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 499 | 33.61 | wind | 9 | 14400 | > th | dose independent | sin | 4 | NA |
| 501 | 33.61 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 563 | 33.67 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 21 |
| 579 | 33.69 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 606 | 33.72 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 634 | 33.74 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 637 | 33.75 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 650 | 33.77 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 685 | 33.81 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 688 | 33.82 | wind | 3 | 14400 | < th | dose independent | sin | 5 | NA |
| 689 | 33.82 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 718 | 33.86 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 737 | 33.87 | wind | 3 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 749 | 33.89 | wind | 3 | 14400 | > th | dose independent | sin | 5 | NA |
| 753 | 33.89 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 760 | 33.90 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 11 |
| 802 | 33.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 809 | 33.96 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 842 | 34.00 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 847 | 34.00 | wind | 9 | 14400 | > th | dose independent | rect. | 21 | 20 |
| 876 | 34.02 | wind | 5 | 14400 | < th | dose dependent | rect. | 1 | 13 |
| 888 | 34.03 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 896 | 34.04 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 904 | 34.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 936 | 34.06 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 13 |
| 940 | 34.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 951 | 34.07 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 20 |
| 974 | 34.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 982 | 34.09 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 13 |
| 994 | 34.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |