BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0224500 Os06g0224500|Os06g0224500
(330 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0224500 Mitochodrial transcription termination factor-... 638 0.0
Os06g0224400 Mitochodrial transcription termination factor-... 311 3e-85
Os06g0225200 Mitochodrial transcription termination factor-... 239 2e-63
Os06g0224700 Mitochodrial transcription termination factor-... 235 4e-62
Os06g0224900 Mitochodrial transcription termination factor-... 229 2e-60
Os06g0224650 Mitochodrial transcription termination factor-... 184 8e-47
Os11g0206600 Mitochodrial transcription termination factor-... 167 9e-42
Os11g0206200 Mitochodrial transcription termination factor-... 162 3e-40
Os06g0225100 Mitochodrial transcription termination factor-... 157 1e-38
Os06g0224600 Mitochodrial transcription termination factor-... 156 2e-38
Os02g0749800 Mitochodrial transcription termination factor-... 138 6e-33
Os11g0246100 Mitochodrial transcription termination factor-... 113 2e-25
Os08g0528700 Mitochodrial transcription termination factor-... 112 3e-25
Os11g0206300 Mitochodrial transcription termination factor-... 111 7e-25
Os02g0749900 Mitochodrial transcription termination factor-... 104 1e-22
Os11g0206501 83 3e-16
Os07g0423000 Mitochodrial transcription termination factor-... 74 1e-13
Os07g0496500 70 3e-12
Os05g0403400 Mitochodrial transcription termination factor-... 69 6e-12
Os04g0637500 Mitochodrial transcription termination factor-... 68 9e-12
>Os06g0224500 Mitochodrial transcription termination factor-related family
protein
Length = 330
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/330 (96%), Positives = 318/330 (96%)
Query: 1 MIHLRRCVLSRLLQPPCLTAATHANXXXXXXXXXXXXGAAEPFAVEDYLVESCGLTRARA 60
MIHLRRCVLSRLLQPPCLTAATHAN GAAEPFAVEDYLVESCGLTRARA
Sbjct: 1 MIHLRRCVLSRLLQPPCLTAATHANSLLSLHLRRLLSGAAEPFAVEDYLVESCGLTRARA 60
Query: 61 EKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASDPRLLCARVDRTLDARVAELG 120
EKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASDPRLLCARVDRTLDARVAELG
Sbjct: 61 EKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASDPRLLCARVDRTLDARVAELG 120
Query: 121 GIGLSRSQIARLIPLARGGFRIKSLGSKLAFLVTVPGGCQDELWAIKPGTRLFALAVVKF 180
GIGLSRSQIARLIPLARGGFRIKSLGSKLAFLVTVPGGCQDELWAIKPGTRLFALAVVKF
Sbjct: 121 GIGLSRSQIARLIPLARGGFRIKSLGSKLAFLVTVPGGCQDELWAIKPGTRLFALAVVKF 180
Query: 181 AILSQGKITKKSGLFKKLGWSQEDLSLAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPY 240
AILSQGKITKKSGLFKKLGWSQEDLSLAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPY
Sbjct: 181 AILSQGKITKKSGLFKKLGWSQEDLSLAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPY 240
Query: 241 IAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALISNEKFLDKFVHPYVES 300
IAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALISNEKFLDKFVHPYVES
Sbjct: 241 IAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALISNEKFLDKFVHPYVES 300
Query: 301 VPGIGDAYASSCAGCGVDQLKLLSKNKIMC 330
VPGIGDAYASSCAGCGVDQLKLLSKNKIMC
Sbjct: 301 VPGIGDAYASSCAGCGVDQLKLLSKNKIMC 330
>Os06g0224400 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 196/393 (49%), Positives = 230/393 (58%), Gaps = 64/393 (16%)
Query: 1 MIHLRRCVLSRLLQPPCLTAATHANXX-XXXXXXXXXXGAAEPFAVEDYLVESCGLTRAR 59
MIHLRR LSRLL PPC T A EPFAVEDYLV+SCGLTRAR
Sbjct: 1 MIHLRRSFLSRLLHPPCPTPANPLPLHRLLSSAAAAAPIPPEPFAVEDYLVDSCGLTRAR 60
Query: 60 AEKVSGKLSHLRSPSKPDAVLAI------------------------------------L 83
A+K SGKLSHLRSPS PDAVLA L
Sbjct: 61 AKKASGKLSHLRSPSNPDAVLAFLSGLGLSRPDIAAVVVNDPLFICARVDKTLATRVAEL 120
Query: 84 SGLGLTRPDIAAAV----------ASDPRL-----LCARVDRTLDARVAELGGIGLSRSQ 128
+ LGL+R IA + + PRL + DR L+ G + +
Sbjct: 121 TDLGLSRSQIARLIPVVRSLFRCKSLAPRLAFLLTVFGSFDRCLEVIKTNYGVLSSNVEA 180
Query: 129 IAR--LIPLARGGFRIKSLGSKLAF---LVTVPGGCQDEL------WAIKPGTRLFALAV 177
+ + L L G I S AF +++ P +E + K GTR+F AV
Sbjct: 181 VIKPNLAVLKECGISIADRPS-YAFASRVISRPTKHLEEAVVLANEFGAKQGTRVFTNAV 239
Query: 178 VKFAILSQGKITKKSGLFKKLGWSQEDLSLAAKNMPSILAMGEKRLRQRMKFLTEDVGLE 237
+ F IL Q K+ KK FKKLGWSQ+DLSLA ++MP ILAM E+R+R+ MKFLTEDVGLE
Sbjct: 240 MIFGILGQEKLAKKLEFFKKLGWSQDDLSLAVRSMPHILAMKEERMRRGMKFLTEDVGLE 299
Query: 238 IPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALISNEKFLDKFVHPY 297
IPYIA+RPAL YSIERRLLPRHCLINVLK NGLLK NYDFY+ ++ISN+ F++KFV PY
Sbjct: 300 IPYIARRPALTMYSIERRLLPRHCLINVLKGNGLLKANYDFYNISVISNDDFMEKFVQPY 359
Query: 298 VESVPGIGDAYASSCAGCGVDQLKLLSKNKIMC 330
VESVPG+GDAYASSC GCGV QLKLLSK K C
Sbjct: 360 VESVPGLGDAYASSCTGCGVHQLKLLSKRKTKC 392
>Os06g0225200 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 198/378 (52%), Gaps = 66/378 (17%)
Query: 3 HLRRCVLSRLLQP--PCLTAATHANXXXXXXXXXXXXGAA---EPFAVEDYLVESCGLTR 57
HLRR ++S LL+P P TAA A EPFAVEDYLV + GLT
Sbjct: 4 HLRRHMISLLLRPAYPHPTAAISPLSSLRRLLLFSTTAAPVSPEPFAVEDYLVATWGLTG 63
Query: 58 ARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASDPRLLCARVDRTLDARVA 117
A+A K S KLSHLRSPSKPDAVLA LS LGL IAA +DPR LCA V+ L RV
Sbjct: 64 AQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLARRVD 123
Query: 118 ELGGIGLSRSQIARLIPLARGGFRIKSLGSKLAFLVTVPGGCQDELWA------------ 165
ELGG+GLSRSQIARL+PLA FR S+G+ L F + + G L A
Sbjct: 124 ELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLLGSDL 183
Query: 166 ---IKPG--------------------TRLF---------ALAVVKFAILSQGKITKKSG 193
+KP +RLF A+A V+ L + + G
Sbjct: 184 EKVVKPNLELLKQCGMSDFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRMFRHG 243
Query: 194 LFKKLGWSQEDLSLAAKNM-----------------PSILAMGEKRLRQRMKFLTEDVGL 236
L S+E ++ + M P ++A E+++RQ +FL DVGL
Sbjct: 244 LIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRDVGL 303
Query: 237 EIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALISNEKFLDKFVHP 296
E YIA RP L YS+ERRLLPRH L+ VL+ GLL D+Y+TA +S KF+ KFV P
Sbjct: 304 EGRYIAHRPVLFLYSLERRLLPRHHLLKVLRMKGLLDCELDYYNTAAMSERKFVRKFVDP 363
Query: 297 YVESVPGIGDAYASSCAG 314
Y +PG+ DAY SSCAG
Sbjct: 364 YKCHIPGLADAYTSSCAG 381
>Os06g0224700 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 201/382 (52%), Gaps = 68/382 (17%)
Query: 1 MIHLRRCVLSRLLQPPC---LTAATHANXXXXXXXXXXXXGAAEPFAVEDYLVESCGLTR 57
MI LR +LS LLQP + + +PFAV++YLV +CGLTR
Sbjct: 1 MIRLRERILSLLLQPASPRPIAGIFPPPCPLRRLLSTTAPVSPKPFAVDEYLVATCGLTR 60
Query: 58 ARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPD-IAAAVASDPRLLCARVDRTLDARV 116
A+A K S KLS+LRSPS PDAVLA LS LGL+RPD IAAAVA+DPRLLCA V +L RV
Sbjct: 61 AQAAKASEKLSNLRSPSNPDAVLAFLSDLGLSRPDGIAAAVAADPRLLCADVGSSLARRV 120
Query: 117 AELGGIGLSRSQIARLIPLARGGFRIKSLGSKLAFLVTVPGGCQDELWAIKP-----GTR 171
ELGG+GLSRSQIARL+PLA FR SL ++LAF V G ++ L A+K G+
Sbjct: 121 DELGGLGLSRSQIARLLPLAGRCFRSSSLATRLAFWHPVFGSFENILKALKMNAALLGSD 180
Query: 172 LFALAVVKFAILSQGKITKKSGLFKKL-----------------------------GWSQ 202
L +A A L+Q I L GW
Sbjct: 181 LDKVAKPNLAFLAQCGINASDVTRTTLSLYSCRLFTVNPRFLQDAVARVEELGVARGWRT 240
Query: 203 -----------------------EDLSLAAKNMPSILAMGEKRLR-------QRMKFLTE 232
+DL + + I+ + LR + ++FL
Sbjct: 241 FHRVLSTVAFLSRETIASKMQLLDDLGFSQDDFLVIVRRAPQVLRLSDGRIRRSVEFLIR 300
Query: 233 DVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALISNEKFLDK 292
DVGLE YIAQRP L+ YS+ERRLLPRHCL+ VLK GLL + +Y A +S EKF+ +
Sbjct: 301 DVGLEQSYIAQRPTLLAYSLERRLLPRHCLLKVLKAKGLLNCDLSYYCIAAMSEEKFVQR 360
Query: 293 FVHPYVESVPGIGDAYASSCAG 314
FV P+ + + G+ DAY SSC+G
Sbjct: 361 FVDPFKDKIQGLADAYTSSCSG 382
>Os06g0224900 Mitochodrial transcription termination factor-related family
protein
Length = 378
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/334 (44%), Positives = 191/334 (57%), Gaps = 60/334 (17%)
Query: 41 EPFAVEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASD 100
EPFAVEDYLV +CGLT +A K + LS LRSPSKPDA +A LSGLGL+R IAAAVA+D
Sbjct: 42 EPFAVEDYLVTTCGLTGDQARKAAKTLSRLRSPSKPDAAVAFLSGLGLSRSGIAAAVAAD 101
Query: 101 PRLLCARVDRTLDARVAELGGIGLSRSQIARLIPLARGGFRIKSLGSKLAFLVTVPGGCQ 160
PRLLCA V++ L RVAELG +G+SRSQIARLIPLAR FR SL + L F + V G +
Sbjct: 102 PRLLCADVEKNLAKRVAELGELGISRSQIARLIPLARQSFRSSSLATNLGFWLPVLGSFE 161
Query: 161 DELWAIK-------------------------------PGTRL----------------- 172
+ L A+K P TRL
Sbjct: 162 NVLMALKANGAILGSDVEKVVKPNLALLQQCGIHVCDFPHTRLPTVLCRPPNHVQEAVAR 221
Query: 173 ------------FALAVVKFAILSQGKITKKSGLFKKLGWSQEDLSLAAKNMPSILAMGE 220
F A+V FA ++ K+ K G+ + GWS++DLS+ + P ++ M
Sbjct: 222 IGEFGVPQYSPVFRNALVPFAYQNKEKLAAKIGVLEMFGWSEDDLSMTMRKGPVVMNMSV 281
Query: 221 KRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYS 280
+RLR+ ++FLT DV LE YIA+RP ++ YS+ERRLLPRH L+ L GLL DFYS
Sbjct: 282 ERLRKNVEFLTRDVKLETRYIARRPIMISYSLERRLLPRHRLLRFLSAKGLLDGELDFYS 341
Query: 281 TALISNEKFLDKFVHPYVESVPGIGDAYASSCAG 314
++ +KFLDKFVH S+ +AYASS G
Sbjct: 342 AVALTEKKFLDKFVHSCKCSIADPANAYASSFVG 375
>Os06g0224650 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 192/399 (48%), Gaps = 84/399 (21%)
Query: 1 MIHLRRCVLSRLLQP------------PCLTAATHANXXXXXXXXXXXXGAAEPFAVEDY 48
MI RR +L+ LLQP PC + +PFAVEDY
Sbjct: 1 MIQFRRRILTLLLQPASPRPIAGIFLPPC---------SLRRLLSTTAPVSPKPFAVEDY 51
Query: 49 LVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASDPRLLCARV 108
LV CGLTRA A K S K+SHL SPS PDAV+A LS LGL RP IAAA+A+DPRLLCA V
Sbjct: 52 LVAGCGLTRAEAAKASAKISHLSSPSNPDAVIAFLSDLGLPRPQIAAAIAADPRLLCADV 111
Query: 109 DRTLDARVAELGGIGLSRSQIARLIPLARGGFRIKSLGSKLAFLVTVPGGCQDELWAIKP 168
++ L RV ELG +G SRSQIARL+PLA FR SL + LAF + V G L A++
Sbjct: 112 EKNLAKRVGELGDLGFSRSQIARLLPLAGWCFRSSSLATNLAFWLPVFGSFDKILKALRM 171
Query: 169 GTRLFALAVVK-----FAILSQ-----GKITKKSGLFKK--LGWSQEDLSLAAKNMPSI- 215
L + V K A L Q + + S ++ L + E L A + +
Sbjct: 172 NKNLLSPGVQKSAKPILAFLEQCGINASDVARSSTMYSSRLLTANPEYLRDAVARVEELG 231
Query: 216 --------------LAMGEKRLRQRMKFLTEDVGL----------EIPYIAQ------RP 245
+A+ K R L E++G ++P R
Sbjct: 232 LDRSSRRFHRGLVAVALVSKETAARKIRLMEELGFSQDDLLVIMRKLPNFLALSEKKIRR 291
Query: 246 ALMF----------YSIERRLLPRHCLI-NVLKRNGLLKI---------NYDFYSTALIS 285
A+ F Y ++R +L + L +L R+ LLK+ D+YSTA +S
Sbjct: 292 AVEFLKRDVGLEGRYIVQRPVLLSYSLERRLLPRHCLLKVLRTKGLLNSELDYYSTAALS 351
Query: 286 NEKFLDKFVHPYVESVPGIGDAYASSCAGCGVDQLKLLS 324
+KF++KFVHPY + + G+ DAYAS C+ G LLS
Sbjct: 352 EKKFVNKFVHPYEDHIAGLADAYASGCSEEGNGVASLLS 390
>Os11g0206600 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 181/341 (53%), Gaps = 68/341 (19%)
Query: 40 AEPFAVEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVAS 99
A PF+VE+YLV +CGLT A+A K S KLSHLRSP+KPDAVLA+LSG+GL+R D+AA VA+
Sbjct: 46 APPFSVEEYLVATCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSRADLAAVVAA 105
Query: 100 DPRLLCARVDRTLDARVAEL-GGIGLSRSQIARLIPLARG--GFRIKSLGSKLAFLVTVP 156
DP LLCAR R + R+ L +GLS + +AR + LA G G R + +L F +
Sbjct: 106 DPMLLCARA-RNVARRLHSLRDRVGLSDADVARFL-LAGGAMGLRKCDIAPRLEFWIGFV 163
Query: 157 GGCQDELWA---------------IKPGTRLF---ALAVVKFAILSQGKIT--------- 189
G L A +KP L L+V + A LS K T
Sbjct: 164 GSFDKLLPALKGNNGILMSDLDKVVKPNIALLQECGLSVCEIAKLSTLKWTVLSLSPERV 223
Query: 190 -------------KKSGLFKK-----------------------LGWSQEDLSLAAKNMP 213
+ S FK LG S++ L A P
Sbjct: 224 KASVLCVEKLVVPRSSDRFKHVLKSACWISEDMLAMKMEFLRSTLGCSEDKLRAAVCISP 283
Query: 214 SILAMGEKRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLK 273
I + +K L +++ FL +VGLE +I +RP ++ YS+E+R++PRH ++ +L+ GL+K
Sbjct: 284 HIFYLSDKNLCRKIDFLISEVGLEREFIVERPWVLGYSLEKRMVPRHSVMKILRTMGLMK 343
Query: 274 INYDFYSTALISNEKFLDKFVHPYVESVPGIGDAYASSCAG 314
DF S+ + S +KF+ +++ PY ++ P + D+YA++CAG
Sbjct: 344 DAVDFSSSLVYSEKKFVARYIDPYKQAAPTLADSYAAACAG 384
>Os11g0206200 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 171/342 (50%), Gaps = 72/342 (21%)
Query: 42 PFAVEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASDP 101
PF+VE+YLV++CGLT A+A K S KLSHLRSP+KPDAVLA+LSG+GL+R D+AA VASDP
Sbjct: 60 PFSVEEYLVDTCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSRADLAAVVASDP 119
Query: 102 RLLCARVDRTLDARVAEL-GGIGLSRSQIARLIPLARG--GFRIKSLGSKLAFLVTVPGG 158
+LLCAR D + R+A L +GLS QI + LA G G + S+L F + G
Sbjct: 120 QLLCARAD-NIARRIASLRDRVGLSDPQIGSFL-LAGGAKGIHACDVASRLEFWIPFLGS 177
Query: 159 CQDELWAIKPGTRLFALA----VVK--FAILSQGKIT----------------------- 189
+ L +K G + L+ V+K A+L + +T
Sbjct: 178 FETLLRILK-GNNVLVLSDLEKVIKPNIALLQECGLTVCDIAKMARFAPRMFTSNPKQVE 236
Query: 190 ------------KKSGLFK-----------------------KLGWSQEDLSLAAKNMPS 214
+ SG FK LG S + L A + +P
Sbjct: 237 GFVRRADELGVPRTSGQFKYMVGIFANISEGSATARMEYLSRSLGCSMDKLRSAVQKLPQ 296
Query: 215 ILAMGEKRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGL--L 272
IL + E L +++FL V LE Y+ + P L YS+E+RL+ RH ++ VL GL L
Sbjct: 297 ILGLSETNLGSKIEFLVGKVRLEPEYLLKTPKLFTYSLEKRLVARHYIVQVLAAKGLKGL 356
Query: 273 KINYDFYSTALISNEKFLDKFVHPYVESVPGIGDAYASSCAG 314
K + F S + F+ F+ + VPG+ DAYA+ AG
Sbjct: 357 KKDVPFCSYVQLGESCFVKNFIDQHENVVPGLSDAYAALRAG 398
>Os06g0225100 Mitochodrial transcription termination factor-related family
protein
Length = 404
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 162/344 (47%), Gaps = 89/344 (25%)
Query: 43 FAVEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAILS------------------ 84
FAVE+YLV +C LT +A K S +SHL+SPS+PDAV+A L+
Sbjct: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFLAGLGLSAADIAAAVAYDPR 108
Query: 85 ------------------GLGLTRPDIAAAVASDP------------------------- 101
GLGL+ IA V DP
Sbjct: 109 LLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETL 168
Query: 102 --------RLLCARVDRTLDARVAELGGIGLSRSQIARL-IPLARGGFRIKSLGSKLAFL 152
LL + +++ + VA L GL IA+L IPL R L
Sbjct: 169 LQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPLPR-------------LL 215
Query: 153 VTVPGGCQD-----ELWAIKPGTRLFALAVVKFAILSQGKITKK-SGLFKKLGWSQEDLS 206
T P +D E ++ G+++F A++ A +S+ KI K L K L WS +
Sbjct: 216 TTSPERVRDMVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEAR 275
Query: 207 LAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVL 266
+A +P +L E +L + +FL +VGLE YIA RPA++ YS+ERRL+PRHC++ L
Sbjct: 276 IAVSKLPVVLRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYL 335
Query: 267 KRNGLLKINYDFYSTALISNEKFLDKFVHPYVESVPGIGDAYAS 310
K NGL++ + +YS ++ E F++K++ PY ++ P + + YA+
Sbjct: 336 KDNGLIESDKSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAA 379
>Os06g0224600 Mitochodrial transcription termination factor-related family
protein
Length = 389
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 116/174 (66%), Gaps = 5/174 (2%)
Query: 3 HLRRCVLSRLLQPPCLTAATH--ANXXXXXXXXXXXXGAAEPFAVEDYLVESCGLTRARA 60
HL+R ++S LL P A+ H A +++PFA EDYLV +CGLTRA+A
Sbjct: 4 HLQRRIVSLLLLHP---ASPHPVAAISLGRLLSTTAPVSSKPFAAEDYLVAACGLTRAQA 60
Query: 61 EKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASDPRLLCARVDRTLDARVAELG 120
+ S ++SHLRSPSKPDAVLA L+GLG+ RPDIA AVA+DPRLLCA V+ L RVAELG
Sbjct: 61 ARASERISHLRSPSKPDAVLAFLAGLGIPRPDIATAVAADPRLLCAGVEGNLAKRVAELG 120
Query: 121 GIGLSRSQIARLIPLARGGFRIKSLGSKLAFLVTVPGGCQDELWAIKPGTRLFA 174
+G+ RSQIARL+PLA+ FR SL + LAF + V G L A++ + L +
Sbjct: 121 DLGIPRSQIARLVPLAKIPFRSSSLATNLAFWLPVFGSLDSILRALRKNSSLLS 174
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
Query: 161 DELWAIKPGTRLFALAVVKFAILSQGKITKKSGLFKKLGWSQEDLSLAAKNMPSILAMGE 220
+EL ++ G+R+F +V A LS+ + K+ L +LG+SQ+D+S+ + MPS L E
Sbjct: 225 EELGMVR-GSRVFHRGLVAVAFLSKEAVATKTRLLVELGFSQDDVSVIFRKMPSFLTASE 283
Query: 221 KRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYS 280
KR+R+ + FL DVGLE YIA+RP L+ YS+ERRLLPR+ L+ VL+ GLL +YS
Sbjct: 284 KRIRRAVGFLKGDVGLEERYIARRPVLLLYSLERRLLPRYYLLKVLRTKGLLDCKLCYYS 343
Query: 281 TALISNEKFLDKFVHPYVESVPGIGDAYASSCAG 314
TA + +KF+++FVHPY + + G+ DAY S C+G
Sbjct: 344 TAALGEKKFIERFVHPYEDHIAGLADAYGSICSG 377
>Os02g0749800 Mitochodrial transcription termination factor-related family
protein
Length = 168
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 166 IKPGTRLFALAVVKFAILSQGKITKKSGLFKK-LGWSQEDLSLAAKNMPSILAMGEKRLR 224
+ PG+++F A+ + Q KI K + K+ LGWSQE+++LA P IL E+RLR
Sbjct: 12 VAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAPRILVASEERLR 71
Query: 225 QRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALI 284
+ +FL ++VGL+ Y+A+R L+ YS+ERRL+PRH ++ +LK GL++ + F++
Sbjct: 72 RNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIEQDRCFFNAVAP 131
Query: 285 SNEKFLDKFVHPYVESVPGIGDAYASSCAG 314
+ EKFL+KFV P+ VPG+ DAY S+CAG
Sbjct: 132 TEEKFLEKFVVPFEGCVPGLADAYESACAG 161
>Os11g0246100 Mitochodrial transcription termination factor-related family
protein
Length = 417
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 174/389 (44%), Gaps = 83/389 (21%)
Query: 1 MIHLRRCVLSRLLQPPCLTAATH--ANXXXXXXXXXXXXGAAEPFAVEDYLVESCGLTRA 58
M+HLR +L P L AAT ++ A PF+VE YL+ +CGLT A
Sbjct: 1 MLHLRNHLL------PLLHAATSTASSSPLHLTHRLLSTAARSPFSVEHYLIATCGLTAA 54
Query: 59 RAEKVSGKLSHLRSPSKPDAVLAILS-------GLGLTRPDIAAAVASDPRLLCARVDRT 111
+A + S KLS L S S PDAVLA+LS L L+R D+AA VA++PRLL AR T
Sbjct: 55 QARRASPKLSRLNSSSNPDAVLALLSSSAAGLDSLSLSRADLAAVVAAEPRLLRARPG-T 113
Query: 112 LDARVAEL-GGIGLSRSQIARLIPLARGGFRIKS--LGSKLAFLVTVPGG---------- 158
+ R+A L G LS QI R ++ G + S + KLAF V G
Sbjct: 114 IARRIASLRGRANLSAPQI-RSFLMSGGAAHLASSDVSPKLAFWVPFLGSFDMLLKILRR 172
Query: 159 -----CQDELWAIKPGTRLF---ALAVVKFAILSQGK---ITKKSGLFKKLGWSQEDL-- 205
D ++P L L V ++Q +T K + E+L
Sbjct: 173 CNAILATDVDRVVRPNVALLGECGLGVCDIVQMTQTAAWLLTFNPERLKIVVRRAEELGV 232
Query: 206 ---SLAAKNMPSILAM-GEKRLRQRMKFLTEDVGLEI----PYIAQRPALMFY------- 250
S A K+ +A E + RM+FL +G + I+++P+++ +
Sbjct: 233 PTSSWAFKDAVCTVARNNEGTIAARMEFLRGTLGCSMDKLRSAISRKPSILGFSEKTLRG 292
Query: 251 -------------------------SIERRLLPRHCLINVLKRNGLLKINYDFYSTALIS 285
S+++RL PRH ++ L GL+K + D+YS
Sbjct: 293 KIEFLLTKVQLETEYILQRPVMLTLSLDKRLAPRHYVLQALVEKGLIKNDVDYYSCVCFG 352
Query: 286 NEKFLDKFVHPYVESVPGIGDAYASSCAG 314
NE F+ +++ + +++PG+ DAYA+ AG
Sbjct: 353 NEHFVARYIDRHEDALPGLTDAYAAVHAG 381
>Os08g0528700 Mitochodrial transcription termination factor-related family
protein
Length = 190
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 75/121 (61%)
Query: 194 LFKKLGWSQEDLSLAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIE 253
L LG S E L A P IL + E +L +++FL VGLE YI QRP L+ YS+E
Sbjct: 64 LSSSLGCSMEKLRSAVCKCPQILGLSESKLHSKIEFLVGKVGLEPDYILQRPVLLTYSLE 123
Query: 254 RRLLPRHCLINVLKRNGLLKINYDFYSTALISNEKFLDKFVHPYVESVPGIGDAYASSCA 313
+RLLPRH ++ VL GL+K DFY +SNE F+ +++ + +VPG+ DAYA+ C+
Sbjct: 124 KRLLPRHYVVEVLLVKGLIKKTVDFYGCVCVSNEDFVARYIDHHENAVPGLADAYAAVCS 183
Query: 314 G 314
G
Sbjct: 184 G 184
>Os11g0206300 Mitochodrial transcription termination factor-related family
protein
Length = 458
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 138/310 (44%), Gaps = 87/310 (28%)
Query: 42 PFAVEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASDP 101
PF+ EDYLV +CGLT +A K S K+SHLRS + PDAVLA+LSG+GL+R D+AA VASDP
Sbjct: 45 PFSAEDYLVATCGLTGDQALKASKKISHLRSAANPDAVLAVLSGVGLSRADLAAVVASDP 104
Query: 102 RLLCARVDRTLDARVAEL-GGIGLSRSQIARLIPLARGGFRIK--SLGSKLAFLVTVPGG 158
LLCAR D + RV L +GLS QI R + LA G ++ + +L F + GG
Sbjct: 105 HLLCARPD-NVSRRVTSLRDRVGLSDPQIGRFL-LAGGAMAVRKCDVAERLEFWIPFLGG 162
Query: 159 CQDELW----------------AIKPGTRLF----------------------------- 173
+ L IKP LF
Sbjct: 163 SFETLLKMLRRNNAIVRADVEKVIKPNIALFQESGLTVRDIVKMPGWLFTFNPKRVEAAV 222
Query: 174 ----------ALAVVKFAILSQGKITKKSG------LFKKLGWSQEDLSLAAKNMPSILA 217
A + +K+ + G IT+ + L L S + + MP+I+
Sbjct: 223 ERTGKLGVELASSRLKYMLSIAGNITEGNASARMKYLSSTLNCSMDKVEYMVGKMPTIIT 282
Query: 218 MGEKRLRQRMKFLTEDVGLEIPYIA----QRPALMFYSIERRLLPRHCLINVLKRNGLLK 273
+ E++LR +++FL+ + + I + P ++ S E+ L+
Sbjct: 283 LSEEKLRSKIEFLSSTLNCCVDKIGHMVCKEPFILAISEEK-----------------LR 325
Query: 274 INYDFYSTAL 283
IN F S+AL
Sbjct: 326 INTKFLSSAL 335
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 143 KSLGSKLAFLVTVPGGCQDELWAI---KPGTRLFALAVVKFAILSQGKITKKSGLFKKLG 199
+ L SK+ FL + C D++ + +P F LA+ + + K L LG
Sbjct: 286 EKLRSKIEFLSSTLNCCVDKIGHMVCKEP----FILAISEEKLRINTKF-----LSSALG 336
Query: 200 WSQEDLSLAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPR 259
S +++ + MPSIL + L ++++FL VGLE YI +P L S+E+RL+PR
Sbjct: 337 CSIDNICVMVYKMPSILGLSVNNLCRKIEFLVTKVGLEPDYILSKPVLFACSLEKRLMPR 396
Query: 260 HCLINVLKRNGLLKINYDFYSTALISNEKFLDKFVHPYVESVPGIGDAYASSCAG 314
H ++ VL GL+K N F + A++ + F+ +++ + +VPG+ DAYA+ C+G
Sbjct: 397 HYIVEVLLAKGLIK-NAGFLTYAILREKDFVARYIDQHKNAVPGLADAYATICSG 450
>Os02g0749900 Mitochodrial transcription termination factor-related family
protein
Length = 382
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 146/346 (42%), Gaps = 83/346 (23%)
Query: 43 FAVEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVL---------------------- 80
F ED LV +CGLT A A K S +L + PS DA L
Sbjct: 40 FVDEDALVAACGLTGAEALKASKRLQ--KVPSNLDAALTFLAFLADFRLSKDDIAAASSR 97
Query: 81 -----------------AILSGLGLTRPDI------AAAVASDPRLLC------------ 105
A L +GL+ P+I A + S+PR +
Sbjct: 98 YPRFLHLKVDETLTSQVARLRDIGLSTPEIGRLITIAPCILSNPRTISRLEFYLSFLGSY 157
Query: 106 ----------------ARVDRTLDARVAELGGIGLSRSQIARLIPLARGGFRIKSLGSKL 149
++ + +A L GL+ IA+++ G RI + +
Sbjct: 158 PRVHSALRNNSSLLRRNNIESEVKPNIAFLEQCGLTTCDIAKIL---MSGSRILIMQPEH 214
Query: 150 AFLVTVPGGCQDELWAIKPGTRLFALAVVKFAILSQGKITKKSGLFKK-LGWSQEDLSLA 208
+ C D+ + + + F A++ +S +++ K + +G S L +A
Sbjct: 215 VKEIV---ACADK-FGMPRESAGFRYALMAVTGISPVRVSAKLDFLRMVIGCSDAQLHIA 270
Query: 209 AKNMPSILAMGEKRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKR 268
P IL E +L + ++FL +VGLE YI RPAL+ YSI++RL+PR+ ++ VL
Sbjct: 271 VSRFPLILTYSEVKLSRSLEFLKAEVGLEPQYIVLRPALLGYSIQKRLMPRYHVMKVLNE 330
Query: 269 NGLLKINYDFYSTALISNEKFLDKFVHPYVESVPGIGDAYASSCAG 314
GLLK + DFYS I E F KF+ PY SVPG+ AY ++ G
Sbjct: 331 KGLLKKDTDFYSMVKIVEESFFKKFLLPYHRSVPGLEKAYLAAREG 376
>Os11g0206501
Length = 266
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 184 SQGKITKK-SGLFKKLGWSQEDLSLAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPYIA 242
++G +T + L + LG S +++ +A P+IL + LR++++FL +VGL++ I
Sbjct: 108 NEGSVTARMEFLSRTLGCSMDNILIAVGKRPTILGLSMDNLRRKIEFLVTEVGLKLECIV 167
Query: 243 QRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALISNEKFLDKFVHPYVESVP 302
+ ++ YS+E+R++PRH ++ +L+ GL+K Y + F+ +++ + + V
Sbjct: 168 ECLGILRYSLEKRMVPRHSVMEILRARGLMKKGASLYGLIMQGEADFVARYIDTHKDMVH 227
Query: 303 GIGDAYASSCAG 314
G+ DAY +SC G
Sbjct: 228 GLADAYNASCFG 239
>Os07g0423000 Mitochodrial transcription termination factor-related family
protein
Length = 408
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 166 IKPGTRLFALAVVKFAILSQGKITKKSGLFKKLGWSQEDLSLAAKNMPSILAMGEKRLRQ 225
++P + +F + FA L K + F LGW++E + A P +++ +++
Sbjct: 255 VRPSSGMFPYSFGLFARLHPRKWKGRMDNFLSLGWTKEQVIEAFVRHPYCMSVSNDKVKL 314
Query: 226 RMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALIS 285
+FL + + Y+A+ P ++ +S ++R+LPR ++N+L G+ N D ++ L+
Sbjct: 315 IWQFLAKKLRWTTDYVARSPMVLSFSYDKRILPRCTVLNLLASRGIF--NRDIKTSHLVL 372
Query: 286 NE-KFLDKFVHPYVESVPGIGDAYAS 310
E KF +K+V PY + +P + +AY+S
Sbjct: 373 GEKKFKEKYVTPYQDEIPEVLEAYSS 398
>Os07g0496500
Length = 175
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 45 VEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAILSGLG-LTRPDIAAAVASDPRL 103
VEDYLV + LTR + KV+ LSHL SP KPDA +A LS L L IAAAVA++ RL
Sbjct: 85 VEDYLVTTYSLTRDKVWKVTNSLSHLSSPCKPDAAVAFLSSLTRLLHSSIAAAVAANLRL 144
Query: 104 LCARVDRTL 112
LCA V++ L
Sbjct: 145 LCADVEKNL 153
>Os05g0403400 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 20/243 (8%)
Query: 82 ILSGLGLTRPDIAAAVASDPRLLCARVDRTLDARVAELGGIGLSRSQIARLIPLARGGFR 141
+ G+ T ++ AA++ +P L ++ ++ V L GL+ + I+RL+ +
Sbjct: 160 FIRGVVGTDANLCAAISRNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVI------ 213
Query: 142 IKSLGSKLAFLVTVPG---GCQDELWAIK-PGTR-LFALAVVKFAILSQGKITKKSGLFK 196
L+ L P G +L A++ P + F + L +G ++ +F
Sbjct: 214 ------NLSALTMSPDRIDGIFGDLEALELPISHSRFVYGFWALSRLKRGAWEERMSVFM 267
Query: 197 KLGWSQEDLSLAAKNMPSILAMGEKRLRQRMKFLTEDVGLEIPYIAQRPALMFYSIERRL 256
+ G S+ +L A + P IL K +++++ F E + + + P L+ +S+E+ +
Sbjct: 268 RFGVSRSELLKAFREQPGILVFTAKTIQRKLSFYQEKLKVAPADVIAHPLLLTFSLEKNI 327
Query: 257 LPRHCLINVLKRNGLLK---INYDFYSTALISNEKFLDKFVHPYVESVPGIGDAYASSCA 313
+P+ ++NVL R G +K D SN F ++FV Y E VP + AY
Sbjct: 328 IPKCAVLNVLLREGKIKRYGREMDLLRPLQRSNISFFERFVRKYEEDVPDVVKAYEGKIK 387
Query: 314 GCG 316
G
Sbjct: 388 FTG 390
>Os04g0637500 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%)
Query: 38 GAAEPFAVEDYLVESCGLTRARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAV 97
+ P + YLV CGL+ A A K + + +HL S S+PDA LA L GLTR + V
Sbjct: 46 SSTPPHFMVQYLVSKCGLSPAAAAKAAPRFAHLDSASRPDAALAFLRSQGLTRAQVREVV 105
Query: 98 ASDPRLLCARVDRTLDARVAELGGIGLSRSQIARLIPL 135
+ P LL + VD TLD + + +GL R+ +ARL L
Sbjct: 106 SWKPELLLSDVDATLDPKFRAVRALGLGRADVARLFAL 143
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,278,981
Number of extensions: 395485
Number of successful extensions: 1183
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 1161
Number of HSP's successfully gapped: 32
Length of query: 330
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 229
Effective length of database: 11,762,187
Effective search space: 2693540823
Effective search space used: 2693540823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)