Os02g0749800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os02g0749800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.77 | 0.378 | 12.4 | 0.184 | 0.86 | -0.609 | -0.588 | 1.4 | -0.374 | 20.4 | 19.69 | 2636 | -- | -- |
| 66.8 | 0.381 | 12.4 | 0.291 | 0.871 | -1.1 | -0.869 | -- | -0.314 | 20 | 19.1 | 6412 | -- | -- |
| 65.8 | 0.378 | 12.4 | 0.206 | 0.854 | -0.61 | -- | 1.42 | -0.374 | 20.5 | 19.7 | 2694 | -- | -- |
| 66.18 | 0.379 | 12.4 | 0.488 | 0.841 | -1.13 | -- | -- | -0.327 | 20.4 | 17.5 | 21852 | -- | -- |
| 106.07 | 0.48 | 12.4 | 0.208 | -- | -0.567 | -- | 1.54 | -0.381 | -- | 19.8 | 2890 | -- | -- |
| 82.05 | 0.425 | 12.5 | -0.472 | 0.858 | -- | -0.66 | -- | -0.619 | 20.2 | -- | -- | -- | -- |
| 83.36 | 0.428 | 12.5 | -0.453 | 0.857 | -- | -- | -- | -0.62 | 20.3 | -- | -- | -- | -- |
| 107.15 | 0.482 | 12.4 | 0.59 | -- | -1.24 | -- | -- | -0.302 | -- | 17.3 | 23086 | -- | -- |
| 69.2 | 0.387 | 12.4 | -- | 0.847 | -0.819 | -- | -- | -0.43 | 20.4 | 17.3 | 21893 | -- | -- |
| 124.12 | 0.521 | 12.5 | -0.459 | -- | -- | -- | -- | -0.629 | -- | -- | -- | -- | -- |
| 88.77 | 0.441 | 12.5 | -- | 0.86 | -- | -- | -- | -0.57 | 20.3 | -- | -- | -- | -- |
| 110.11 | 0.489 | 12.4 | -- | -- | -0.83 | -- | -- | -0.469 | -- | 16.02 | 23154 | -- | -- |
| 129.68 | 0.532 | 12.4 | -- | -- | -- | -- | -- | -0.579 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 2 | 60.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 3 | 60.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 12 |
| 19 | 61.42 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 96 | 62.86 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 110 | 63.02 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 115 | 63.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 120 | 63.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 121 | 63.12 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 136 | 63.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 144 | 63.21 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 169 | 63.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 209 | 63.51 | humidity | 90 | 14400 | > th | dose independent | sin | 5 | NA |
| 217 | 63.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 223 | 63.60 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 224 | 63.60 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 227 | 63.62 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 230 | 63.63 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 259 | 63.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 273 | 63.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 285 | 63.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 303 | 63.97 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 323 | 64.05 | radiation | 20 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 336 | 64.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 338 | 64.12 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 348 | 64.14 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 388 | 64.26 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 389 | 64.27 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 403 | 64.30 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 417 | 64.34 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 446 | 64.41 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 459 | 64.44 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 462 | 64.45 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 471 | 64.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 489 | 64.49 | humidity | 90 | 14400 | < th | dose independent | sin | 6 | NA |
| 499 | 64.51 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 500 | 64.51 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 509 | 64.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 514 | 64.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 515 | 64.52 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 516 | 64.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 531 | 64.54 | wind | 7 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 538 | 64.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 570 | 64.62 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 585 | 64.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 603 | 64.67 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 608 | 64.68 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 694 | 64.77 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 714 | 64.80 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 727 | 64.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 740 | 64.86 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 743 | 64.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 750 | 64.87 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 751 | 64.87 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 755 | 64.88 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 756 | 64.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 785 | 64.91 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 794 | 64.92 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 8 | NA |
| 798 | 64.93 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 867 | 64.99 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 868 | 64.99 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 877 | 64.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 880 | 65.00 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 883 | 65.00 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 891 | 65.01 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 900 | 65.02 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 907 | 65.02 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 911 | 65.03 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 915 | 65.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 965 | 65.08 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 969 | 65.09 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 3 |