BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0749800 Os02g0749800|AK064731
(168 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0749800 Mitochodrial transcription termination factor-... 340 3e-94
Os06g0225100 Mitochodrial transcription termination factor-... 165 1e-41
Os06g0225200 Mitochodrial transcription termination factor-... 153 7e-38
Os06g0224400 Mitochodrial transcription termination factor-... 149 1e-36
Os06g0224700 Mitochodrial transcription termination factor-... 146 6e-36
Os06g0224600 Mitochodrial transcription termination factor-... 146 8e-36
Os06g0224500 Mitochodrial transcription termination factor-... 138 2e-33
Os06g0224650 Mitochodrial transcription termination factor-... 128 2e-30
Os08g0528700 Mitochodrial transcription termination factor-... 128 2e-30
Os02g0749900 Mitochodrial transcription termination factor-... 128 3e-30
Os11g0206600 Mitochodrial transcription termination factor-... 123 5e-29
Os11g0246100 Mitochodrial transcription termination factor-... 122 1e-28
Os11g0206501 111 3e-25
Os11g0206200 Mitochodrial transcription termination factor-... 108 1e-24
Os06g0224900 Mitochodrial transcription termination factor-... 102 2e-22
Os11g0206300 Mitochodrial transcription termination factor-... 100 4e-22
Os07g0423000 Mitochodrial transcription termination factor-... 82 2e-16
Os05g0403600 Mitochodrial transcription termination factor-... 65 2e-11
>Os02g0749800 Mitochodrial transcription termination factor-related family
protein
Length = 168
Score = 340 bits (872), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP
Sbjct: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE
Sbjct: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPVQAE 168
QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPVQAE
Sbjct: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPVQAE 168
>Os06g0225100 Mitochodrial transcription termination factor-related family
protein
Length = 404
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 114/166 (68%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
+D V +A +GV GS+MFRHA+ I ++KI AK+ L ++L WS E +AVSK P
Sbjct: 223 RDMVAQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLP 282
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
+L +SE++L R +EFLI EVGL+P Y+A R +L YSLERRL+PRH V+K LK+ GLIE
Sbjct: 283 VVLRSSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIE 342
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPVQ 166
D+ +++AV TEE F+EK++ P+E P LA+ Y + + K P +
Sbjct: 343 SDKSYYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAAVSSVKIPTR 388
>Os06g0225200 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
+DAV R +LG+ S+MFRH L ++ + K+ V++E LG+S++E+ + + KAP
Sbjct: 222 RDAVARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQVMEE-LGFSRDELLMIIRKAP 280
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
+++ +SEE++R+ AEFL +VGL+ +Y+A R VL +YSLERRL+PRH ++K+L+ +GL++
Sbjct: 281 QLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSLERRLLPRHHLLKVLRMKGLLD 340
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKT 163
+ ++N A +E KF+ KFV P++ +PGLADAY S+CAG+T
Sbjct: 341 CELDYYNTAAMSERKFVRKFVDPYKCHIPGLADAYTSSCAGET 383
>Os06g0224400 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
++AV A + G G+++F +A+ G +GQ+K+ K+ K+ LGWSQ++++LAV P
Sbjct: 217 EEAVVLANEFGAKQGTRVFTNAVMIFGILGQEKLAKKLEFFKK-LGWSQDDLSLAVRSMP 275
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
IL EER+RR +FL ++VGL+ Y+ARR L MYS+ERRL+PRH ++ +LK GL++
Sbjct: 276 HILAMKEERMRRGMKFLTEDVGLEIPYIARRPALTMYSIERRLLPRHCLINVLKGNGLLK 335
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAG 161
+ F+N + + F+EKFV P+ VPGL DAY S+C G
Sbjct: 336 ANYDFYNISVISNDDFMEKFVQPYVESVPGLGDAYASSCTG 376
>Os06g0224700 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
+DAV R +LGVA G + F LST + ++ I +K+ +L + LG+SQ++ + V +AP
Sbjct: 223 QDAVARVEELGVARGWRTFHRVLSTVAFLSRETIASKMQLLDD-LGFSQDDFLVIVRRAP 281
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
++L S+ R+RR+ EFLI +VGL+ Y+A+R LL YSLERRL+PRH ++K+LK +GL+
Sbjct: 282 QVLRLSDGRIRRSVEFLIRDVGLEQSYIAQRPTLLAYSLERRLLPRHCLLKVLKAKGLLN 341
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGK 162
D ++ A +EEKF+++FV PF+ + GLADAY S+C+G+
Sbjct: 342 CDLSYYCIAAMSEEKFVQRFVDPFKDKIQGLADAYTSSCSGE 383
>Os06g0224600 Mitochodrial transcription termination factor-related family
protein
Length = 389
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 112/163 (68%), Gaps = 1/163 (0%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
+DAV R +LG+ GS++F L + ++ + K +L E LG+SQ++V++ K P
Sbjct: 218 RDAVARVEELGMVRGSRVFHRGLVAVAFLSKEAVATKTRLLVE-LGFSQDDVSVIFRKMP 276
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
L ASE+R+RR FL +VGL+ +Y+ARR VLL+YSLERRL+PR+ ++K+L+ +GL++
Sbjct: 277 SFLTASEKRIRRAVGFLKGDVGLEERYIARRPVLLLYSLERRLLPRYYLLKVLRTKGLLD 336
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKT 163
C+++ A E+KF+E+FV P+E + GLADAY S C+GK
Sbjct: 337 CKLCYYSTAALGEKKFIERFVHPYEDHIAGLADAYGSICSGKV 379
>Os06g0224500 Mitochodrial transcription termination factor-related family
protein
Length = 330
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 12 VAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAPRILVASEERLR 71
+ PG+++F A+ + Q KI K + K+ LGWSQE+++LA P IL E+RLR
Sbjct: 166 IKPGTRLFALAVVKFAILSQGKITKKSGLFKK-LGWSQEDLSLAAKNMPSILAMGEKRLR 224
Query: 72 RNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIEQDRCFFNAVAP 131
+ +FL ++VGL+ Y+A+R L+ YS+ERRL+PRH ++ +LK GL++ + F++
Sbjct: 225 QRMKFLTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALI 284
Query: 132 TEEKFLEKFVVPFEGCVPGLADAYESACAG 161
+ EKFL+KFV P+ VPG+ DAY S+CAG
Sbjct: 285 SNEKFLDKFVHPYVESVPGIGDAYASSCAG 314
>Os06g0224650 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
+DAV R +LG+ S+ F L + ++ K+ +++E LG+SQ+++ + + K P
Sbjct: 221 RDAVARVEELGLDRSSRRFHRGLVAVALVSKETAARKIRLMEE-LGFSQDDLLVIMRKLP 279
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
L SE+++RR EFL +VGL+ +Y+ +R VLL YSLERRL+PRH ++K+L+ +GL+
Sbjct: 280 NFLALSEKKIRRAVEFLKRDVGLEGRYIVQRPVLLSYSLERRLLPRHCLLKVLRTKGLLN 339
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACA 160
+ +++ A +E+KF+ KFV P+E + GLADAY S C+
Sbjct: 340 SELDYYSTAALSEKKFVNKFVHPYEDHIAGLADAYASGCS 379
>Os08g0528700 Mitochodrial transcription termination factor-related family
protein
Length = 190
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 103/164 (62%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
K V++A +L + S F++A+ + ++A++ L SLG S E++ AV K P
Sbjct: 24 KVIVQQAEKLRMPGCSWAFKNAVGAVARSNEGIVNARMEFLSSSLGCSMEKLRSAVCKCP 83
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
+IL SE +L EFL+ +VGL+P Y+ +R VLL YSLE+RL+PRH VV++L +GLI+
Sbjct: 84 QILGLSESKLHSKIEFLVGKVGLEPDYILQRPVLLTYSLEKRLLPRHYVVEVLLVKGLIK 143
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTP 164
+ F+ V + E F+ +++ E VPGLADAY + C+GK P
Sbjct: 144 KTVDFYGCVCVSNEDFVARYIDHHENAVPGLADAYAAVCSGKLP 187
>Os02g0749900 Mitochodrial transcription termination factor-related family
protein
Length = 382
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 104/162 (64%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
K+ V A + G+ S FR+AL I ++ AK+ L+ +G S ++++AVS+ P
Sbjct: 216 KEIVACADKFGMPRESAGFRYALMAVTGISPVRVSAKLDFLRMVIGCSDAQLHIAVSRFP 275
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
IL SE +L R+ EFL EVGL+PQY+ R LL YS+++RL+PR+ V+K+L E+GL++
Sbjct: 276 LILTYSEVKLSRSLEFLKAEVGLEPQYIVLRPALLGYSIQKRLMPRYHVMKVLNEKGLLK 335
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGK 162
+D F++ V EE F +KF++P+ VPGL AY +A GK
Sbjct: 336 KDTDFYSMVKIVEESFFKKFLLPYHRSVPGLEKAYLAAREGK 377
>Os11g0206600 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 101/160 (63%)
Query: 9 QLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAPRILVASEE 68
+L V S F+H L +A I +D + K+ L+ +LG S++++ AV +P I S++
Sbjct: 232 KLVVPRSSDRFKHVLKSACWISEDMLAMKMEFLRSTLGCSEDKLRAAVCISPHIFYLSDK 291
Query: 69 RLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIEQDRCFFNA 128
L R +FLI EVGL+ +++ R +L YSLE+R+VPRH V+K+L+ GL++ F ++
Sbjct: 292 NLCRKIDFLISEVGLEREFIVERPWVLGYSLEKRMVPRHSVMKILRTMGLMKDAVDFSSS 351
Query: 129 VAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPVQAE 168
+ +E+KF+ +++ P++ P LAD+Y +ACAGK P
Sbjct: 352 LVYSEKKFVARYIDPYKQAAPTLADSYAAACAGKMPAHVH 391
>Os11g0246100 Mitochodrial transcription termination factor-related family
protein
Length = 417
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 103/167 (61%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
K VRRA +LGV S F+ A+ T + I A++ L+ +LG S +++ A+S+ P
Sbjct: 221 KIVVRRAEELGVPTSSWAFKDAVCTVARNNEGTIAARMEFLRGTLGCSMDKLRSAISRKP 280
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
IL SE+ LR EFL+ +V L+ +Y+ +R V+L SL++RL PRH V++ L E+GLI+
Sbjct: 281 SILGFSEKTLRGKIEFLLTKVQLETEYILQRPVMLTLSLDKRLAPRHYVLQALVEKGLIK 340
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPVQA 167
D +++ V E F+ +++ E +PGL DAY + AGK+P Q+
Sbjct: 341 NDVDYYSCVCFGNEHFVARYIDRHEDALPGLTDAYAAVHAGKSPAQS 387
>Os11g0206501
Length = 266
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
K V RA LGV S FR A+ + + + A++ L +LG S + + +AV K P
Sbjct: 82 KRYVHRADMLGVPRCSPAFRMAVCSTN---EGSVTARMEFLSRTLGCSMDNILIAVGKRP 138
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
IL S + LRR EFL+ EVGL+ + + +L YSLE+R+VPRH V+++L+ RGL++
Sbjct: 139 TILGLSMDNLRRKIEFLVTEVGLKLECIVECLGILRYSLEKRMVPRHSVMEILRARGLMK 198
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPV 165
+ + + E F+ +++ + V GLADAY ++C GK PV
Sbjct: 199 KGASLYGLIMQGEADFVARYIDTHKDMVHGLADAYNASCFGKMPV 243
>Os11g0206200 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 4 VRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAPRIL 63
VRRA +LGV S F++ + I + A++ L SLG S +++ AV K P+IL
Sbjct: 239 VRRADELGVPRTSGQFKYMVGIFANISEGSATARMEYLSRSLGCSMDKLRSAVQKLPQIL 298
Query: 64 VASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGL--IEQ 121
SE L EFL+ +V L+P+Y+ + L YSLE+RLV RH +V++L +GL +++
Sbjct: 299 GLSETNLGSKIEFLVGKVRLEPEYLLKTPKLFTYSLEKRLVARHYIVQVLAAKGLKGLKK 358
Query: 122 DRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPVQAE 168
D F + V E F++ F+ E VPGL+DAY + AGK P + +
Sbjct: 359 DVPFCSYVQLGESCFVKNFIDQHENVVPGLSDAYAALRAGKVPPEVQ 405
>Os06g0224900 Mitochodrial transcription termination factor-related family
protein
Length = 378
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
Query: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
++AV R + GV S +FR+AL ++K+ AK+ VL E GWS++++++ + K P
Sbjct: 216 QEAVARIGEFGVPQYSPVFRNALVPFAYQNKEKLAAKIGVL-EMFGWSEDDLSMTMRKGP 274
Query: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
++ S ERLR+N EFL +V L+ +Y+ARR +++ YSLERRL+PRH +++ L +GL++
Sbjct: 275 VVMNMSVERLRKNVEFLTRDVKLETRYIARRPIMISYSLERRLLPRHRLLRFLSAKGLLD 334
Query: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAG 161
+ F++AVA TE+KFL+KFV + + A+AY S+ G
Sbjct: 335 GELDFYSAVALTEKKFLDKFVHSCKCSIADPANAYASSFVG 375
>Os11g0206300 Mitochodrial transcription termination factor-related family
protein
Length = 458
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 29 IGQDKIDAKVAVLKESLGWSQEEVNLAVSKAPRILVASEERLRRNAEFLIDEVGLQPQYV 88
I ++K+ L +LG S + + + V K P IL S L R EFL+ +VGL+P Y+
Sbjct: 319 ISEEKLRINTKFLSSALGCSIDNICVMVYKMPSILGLSVNNLCRKIEFLVTKVGLEPDYI 378
Query: 89 ARRSVLLMYSLERRLVPRHLVVKLLKERGLIEQDRCFFNAVAPTEEKFLEKFVVPFEGCV 148
+ VL SLE+RL+PRH +V++L +GLI ++ F E+ F+ +++ + V
Sbjct: 379 LSKPVLFACSLEKRLMPRHYIVEVLLAKGLI-KNAGFLTYAILREKDFVARYIDQHKNAV 437
Query: 149 PGLADAYESACAGKTP 164
PGLADAY + C+GK P
Sbjct: 438 PGLADAYATICSGKVP 453
>Os07g0423000 Mitochodrial transcription termination factor-related family
protein
Length = 408
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 9 QLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAPRILVASEE 68
+LGV P S MF ++ + K ++ SLGW++E+V A + P + S +
Sbjct: 252 ELGVRPSSGMFPYSFGLFARLHPRKWKGRMDNFL-SLGWTKEQVIEAFVRHPYCMSVSND 310
Query: 69 RLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIEQDRCFFNA 128
+++ +FL ++ YVAR ++L +S ++R++PR V+ LL RG+ +D +
Sbjct: 311 KVKLIWQFLAKKLRWTTDYVARSPMVLSFSYDKRILPRCTVLNLLASRGIFNRDIKTSHL 370
Query: 129 VAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKTPV 165
V E+KF EK+V P++ +P + +AY S + PV
Sbjct: 371 VL-GEKKFKEKYVTPYQDEIPEVLEAYSSVAESRVPV 406
>Os05g0403600 Mitochodrial transcription termination factor-related family
protein
Length = 399
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 37 KVAVLKESLGWSQEEVNLAVSKAPRILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLM 96
KVA L S G S+ EV A K P L+ ++E +++NA F D + L+ + V V++
Sbjct: 266 KVA-LYRSFGLSESEVFEAFKKQPTALLGADETIKKNASFFRDALKLEMREVMVHPVVMA 324
Query: 97 YSLERRLVPRHLVVKLLKERGLIEQDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYE 156
YS E+ ++PR V+ +L G I D +A+ + + F ++V F VP + +AYE
Sbjct: 325 YSFEKTILPRCAVLSVLMREGKINPDIQLLHALLGSAKTFSGRYVDRFAADVPDVVEAYE 384
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,211,651
Number of extensions: 190261
Number of successful extensions: 547
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 19
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)