Os06g0225200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
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Os06g0225200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochodrial transcription termination factor-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.05 | 0.301 | 10.4 | 0.455 | 0.296 | -0.927 | 0.492 | -0.487 | 0.207 | 17.2 | 79 | 1366 | -- | -- |
| 41.23 | 0.299 | 10.4 | 0.496 | 0.293 | -0.953 | 0.507 | -- | 0.214 | 17.3 | 78.97 | 1343 | -- | -- |
| 41.36 | 0.3 | 10.4 | 0.417 | 0.295 | -0.902 | -- | -0.756 | 0.222 | 18.4 | 78.99 | 1271 | -- | -- |
| 41.76 | 0.301 | 10.4 | 0.496 | 0.295 | -0.97 | -- | -- | 0.215 | 17.9 | 78.26 | 1320 | -- | -- |
| 45.76 | 0.315 | 10.4 | 0.44 | -- | -0.98 | -- | -0.688 | 0.202 | -- | 78.39 | 1304 | -- | -- |
| 52.4 | 0.339 | 10.4 | 0.446 | 0.351 | -- | 0.671 | -- | 0.17 | 16.8 | -- | -- | -- | -- |
| 53.48 | 0.342 | 10.4 | 0.448 | 0.36 | -- | -- | -- | 0.173 | 17.2 | -- | -- | -- | -- |
| 46.16 | 0.316 | 10.4 | 0.491 | -- | -1.03 | -- | -- | 0.216 | -- | 78.55 | 1317 | -- | -- |
| 48.23 | 0.323 | 10.4 | -- | 0.298 | -0.908 | -- | -- | 0.172 | 18.1 | 79 | 1318 | -- | -- |
| 60.25 | 0.363 | 10.4 | 0.436 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 58.77 | 0.359 | 10.4 | -- | 0.352 | -- | -- | -- | 0.123 | 17.3 | -- | -- | -- | -- |
| 52.49 | 0.337 | 10.4 | -- | -- | -0.98 | -- | -- | 0.159 | -- | 78.4 | 1318 | -- | -- |
| 65.26 | 0.377 | 10.4 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 39.03 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 3 | 39.11 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 4 | 39.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 5 | 39.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 6 | 39.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 10 | 39.38 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 20 | 39.82 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 35 | 40.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 40 | 40.19 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 47 | 40.26 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 97 | 40.75 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 99 | 40.75 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 102 | 40.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 108 | 40.80 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 148 | 41.04 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 168 | 41.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 172 | 41.18 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 216 | 41.41 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 232 | 41.46 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 238 | 41.48 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 307 | 41.68 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 320 | 41.73 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 386 | 41.92 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 389 | 41.93 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 8 | NA |
| 415 | 41.99 | humidity | 50.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 459 | 42.08 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 464 | 42.09 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 477 | 42.12 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 486 | 42.14 | humidity | 80.0 | 720 | < th | dose independent | rect. | 10 | 22 |
| 518 | 42.20 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 529 | 42.21 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 549 | 42.24 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 557 | 42.24 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 610 | 42.31 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 657 | 42.38 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 690 | 42.42 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 714 | 42.44 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 718 | 42.45 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 738 | 42.48 | humidity | 80.0 | 720 | < th | dose independent | rect. | 14 | 18 |
| 753 | 42.49 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 845 | 42.59 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 854 | 42.60 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 883 | 42.64 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 992 | 42.76 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 13 |