BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0225200 Os06g0225200|AK067095
(393 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0225200 Mitochodrial transcription termination factor-... 738 0.0
Os06g0224650 Mitochodrial transcription termination factor-... 470 e-133
Os06g0224600 Mitochodrial transcription termination factor-... 456 e-129
Os06g0224700 Mitochodrial transcription termination factor-... 441 e-124
Os06g0224900 Mitochodrial transcription termination factor-... 348 3e-96
Os06g0224400 Mitochodrial transcription termination factor-... 289 2e-78
Os06g0225100 Mitochodrial transcription termination factor-... 270 1e-72
Os11g0206600 Mitochodrial transcription termination factor-... 233 3e-61
Os11g0206200 Mitochodrial transcription termination factor-... 222 4e-58
Os11g0246100 Mitochodrial transcription termination factor-... 203 1e-52
Os02g0749900 Mitochodrial transcription termination factor-... 198 6e-51
Os11g0206300 Mitochodrial transcription termination factor-... 168 6e-42
Os06g0224500 Mitochodrial transcription termination factor-... 148 8e-36
Os02g0749800 Mitochodrial transcription termination factor-... 124 1e-28
Os04g0637500 Mitochodrial transcription termination factor-... 106 3e-23
Os08g0528700 Mitochodrial transcription termination factor-... 97 3e-20
Os07g0423000 Mitochodrial transcription termination factor-... 82 6e-16
Os05g0403600 Mitochodrial transcription termination factor-... 81 1e-15
Os07g0496500 72 6e-13
Os05g0403400 Mitochodrial transcription termination factor-... 72 7e-13
Os11g0206501 70 4e-12
>Os06g0225200 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/393 (93%), Positives = 368/393 (93%)
Query: 1 MVHHLRRHMISLLLRPAYPHPTAAISPXXXXXXXXXFSTTAAPVSPEPFAVEDYLVATWG 60
MVHHLRRHMISLLLRPAYPHPTAAISP FSTTAAPVSPEPFAVEDYLVATWG
Sbjct: 1 MVHHLRRHMISLLLRPAYPHPTAAISPLSSLRRLLLFSTTAAPVSPEPFAVEDYLVATWG 60
Query: 61 LTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLAR 120
LTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLAR
Sbjct: 61 LTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLAR 120
Query: 121 RVDELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLLG 180
RVDELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLLG
Sbjct: 121 RVDELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLLG 180
Query: 181 SDLEKVVKPNLELLKQCGMSDFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRMF 240
SDLEKVVKPNLELLKQCGMSDFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRMF
Sbjct: 181 SDLEKVVKPNLELLKQCGMSDFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRMF 240
Query: 241 RHGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRD 300
RHGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRD
Sbjct: 241 RHGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRD 300
Query: 301 VGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCELDYYNTAAMSERKFVRKF 360
VGLEGRYIAHRPVLFLYS MKGLLDCELDYYNTAAMSERKFVRKF
Sbjct: 301 VGLEGRYIAHRPVLFLYSLERRLLPRHHLLKVLRMKGLLDCELDYYNTAAMSERKFVRKF 360
Query: 361 VDPYKCHIPGLADAYTSSCAGETANGVASLLGV 393
VDPYKCHIPGLADAYTSSCAGETANGVASLLGV
Sbjct: 361 VDPYKCHIPGLADAYTSSCAGETANGVASLLGV 393
>Os06g0224650 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/392 (63%), Positives = 288/392 (73%), Gaps = 5/392 (1%)
Query: 4 HLRRHMISLLLRPAYPHPTAAISPXXXXXXXXXFSTTAAPVSPEPFAVEDYLVATWGLTG 63
RR +++LLL+PA P P A I +T APVSP+PFAVEDYLVA GLT
Sbjct: 3 QFRRRILTLLLQPASPRPIAGI--FLPPCSLRRLLSTTAPVSPKPFAVEDYLVAGCGLTR 60
Query: 64 AQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLARRVD 123
A+A KAS K+SHL SPS PDAV+AFLSDLGLP +IAA ADPR LCADVE NLA+RV
Sbjct: 61 AEAAKASAKISHLSSPSNPDAVIAFLSDLGLPRPQIAAAIAADPRLLCADVEKNLAKRVG 120
Query: 124 ELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLLGSDL 183
ELG LG SRSQIARL+PLA CFRSSS+ TNL FWL + GSFDKILKALRMN +LL +
Sbjct: 121 ELGDLGFSRSQIARLLPLAGWCFRSSSLATNLAFWLPVFGSFDKILKALRMNKNLLSPGV 180
Query: 184 EKVVKPNLELLKQCGM--SDFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRMFR 241
+K KP L L+QCG+ SD A S +Y+SRL TANP YLRDAVARVEELGLDRSSR F
Sbjct: 181 QKSAKPILAFLEQCGINASDVARSSTMYSSRLLTANPEYLRDAVARVEELGLDRSSRRFH 240
Query: 242 HGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRDV 301
GL+AVA SKE+ ARKI++MEELGFS+D+LL+I+RK P +A SE+KIR+A EFLKRDV
Sbjct: 241 RGLVAVALVSKETAARKIRLMEELGFSQDDLLVIMRKLPNFLALSEKKIRRAVEFLKRDV 300
Query: 302 GLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCELDYYNTAAMSERKFVRKFV 361
GLEGRYI RPVL YS KGLL+ ELDYY+TAA+SE+KFV KFV
Sbjct: 301 GLEGRYIVQRPVLLSYSLERRLLPRHCLLKVLRTKGLLNSELDYYSTAALSEKKFVNKFV 360
Query: 362 DPYKCHIPGLADAYTSSCAGETANGVASLLGV 393
PY+ HI GLADAY S C+ E NGVASLL +
Sbjct: 361 HPYEDHIAGLADAYASGCS-EEGNGVASLLSL 391
>Os06g0224600 Mitochodrial transcription termination factor-related family
protein
Length = 389
Score = 456 bits (1174), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/396 (60%), Positives = 291/396 (73%), Gaps = 10/396 (2%)
Query: 1 MVHHLRRHMISLLL-RPAYPHPTAAISPXXXXXXXXXFSTTAAPVSPEPFAVEDYLVATW 59
M+HHL+R ++SLLL PA PHP AAIS +T APVS +PFA EDYLVA
Sbjct: 1 MIHHLQRRIVSLLLLHPASPHPVAAIS-------LGRLLSTTAPVSSKPFAAEDYLVAAC 53
Query: 60 GLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLA 119
GLT AQA +AS+++SHLRSPSKPDAVLAFL+ LG+P IA ADPR LCA VE NLA
Sbjct: 54 GLTRAQAARASERISHLRSPSKPDAVLAFLAGLGIPRPDIATAVAADPRLLCAGVEGNLA 113
Query: 120 RRVDELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLL 179
+RV ELG LG+ RSQIARLVPLA FRSSS+ TNL FWL + GS D IL+ALR NSSLL
Sbjct: 114 KRVAELGDLGIPRSQIARLVPLAKIPFRSSSLATNLAFWLPVFGSLDSILRALRKNSSLL 173
Query: 180 GSDLEKVVKPNLELLKQCGMS--DFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSS 237
++L+KVVKPNL LKQCG+ D A++ LY+SRLFT+NP+ LRDAVARVEELG+ R S
Sbjct: 174 SANLDKVVKPNLAFLKQCGIDARDVASNPNLYSSRLFTSNPMKLRDAVARVEELGMVRGS 233
Query: 238 RMFRHGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFL 297
R+F GL+AVAF SKE+VA K +++ ELGFS+D++ +I RK P + +SE++IR+A FL
Sbjct: 234 RVFHRGLVAVAFLSKEAVATKTRLLVELGFSQDDVSVIFRKMPSFLTASEKRIRRAVGFL 293
Query: 298 KRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCELDYYNTAAMSERKFV 357
K DVGLE RYIA RPVL LYS KGLLDC+L YY+TAA+ E+KF+
Sbjct: 294 KGDVGLEERYIARRPVLLLYSLERRLLPRYYLLKVLRTKGLLDCKLCYYSTAALGEKKFI 353
Query: 358 RKFVDPYKCHIPGLADAYTSSCAGETANGVASLLGV 393
+FV PY+ HI GLADAY S C+G+ ANGVA LLG+
Sbjct: 354 ERFVHPYEDHIAGLADAYGSICSGKVANGVAPLLGL 389
>Os06g0224700 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/392 (60%), Positives = 287/392 (73%), Gaps = 7/392 (1%)
Query: 4 HLRRHMISLLLRPAYPHPTAAISPXXXXXXXXXFSTTAAPVSPEPFAVEDYLVATWGLTG 63
LR ++SLLL+PA P P A I P +T APVSP+PFAV++YLVAT GLT
Sbjct: 3 RLRERILSLLLQPASPRPIAGIFPPPCPLRRLL--STTAPVSPKPFAVDEYLVATCGLTR 60
Query: 64 AQARKASKKLSHLRSPSKPDAVLAFLSDLGLP-PRKIAAVATADPRFLCADVESNLARRV 122
AQA KAS+KLS+LRSPS PDAVLAFLSDLGL P IAA ADPR LCADV S+LARRV
Sbjct: 61 AQAAKASEKLSNLRSPSNPDAVLAFLSDLGLSRPDGIAAAVAADPRLLCADVGSSLARRV 120
Query: 123 DELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLLGSD 182
DELGGLGLSRSQIARL+PLA CFRSSS+ T L FW + GSF+ ILKAL+MN++LLGSD
Sbjct: 121 DELGGLGLSRSQIARLLPLAGRCFRSSSLATRLAFWHPVFGSFENILKALKMNAALLGSD 180
Query: 183 LEKVVKPNLELLKQCGM--SDFA-TSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRM 239
L+KV KPNL L QCG+ SD T+ LY+ RLFT NP +L+DAVARVEELG+ R R
Sbjct: 181 LDKVAKPNLAFLAQCGINASDVTRTTLSLYSCRLFTVNPRFLQDAVARVEELGVARGWRT 240
Query: 240 FRHGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKR 299
F L VAF S+E++A K+Q++++LGFS+D+ L+I+R+APQ++ S+ +IR++ EFL R
Sbjct: 241 FHRVLSTVAFLSRETIASKMQLLDDLGFSQDDFLVIVRRAPQVLRLSDGRIRRSVEFLIR 300
Query: 300 DVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCELDYYNTAAMSERKFVRK 359
DVGLE YIA RP L YS KGLL+C+L YY AAMSE KFV++
Sbjct: 301 DVGLEQSYIAQRPTLLAYSLERRLLPRHCLLKVLKAKGLLNCDLSYYCIAAMSEEKFVQR 360
Query: 360 FVDPYKCHIPGLADAYTSSCAGETANGVASLL 391
FVDP+K I GLADAYTSSC+GE ANGV SL+
Sbjct: 361 FVDPFKDKIQGLADAYTSSCSGE-ANGVRSLV 391
>Os06g0224900 Mitochodrial transcription termination factor-related family
protein
Length = 378
Score = 348 bits (894), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 185/340 (54%), Positives = 233/340 (68%), Gaps = 7/340 (2%)
Query: 47 EPFAVEDYLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATAD 106
EPFAVEDYLV T GLTG QARKA+K LS LRSPSKPDA +AFLS LGL IAA AD
Sbjct: 42 EPFAVEDYLVTTCGLTGDQARKAAKTLSRLRSPSKPDAAVAFLSGLGLSRSGIAAAVAAD 101
Query: 107 PRFLCADVESNLARRVDELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFD 166
PR LCADVE NLA+RV ELG LG+SRSQIARL+PLA FRSSS+ TNLGFWL ++GSF+
Sbjct: 102 PRLLCADVEKNLAKRVAELGELGISRSQIARLIPLARQSFRSSSLATNLGFWLPVLGSFE 161
Query: 167 KILKALRMNSSLLGSDLEKVVKPNLELLKQCGM--SDFA-TSFPLYTSRLFTANPIYLRD 223
+L AL+ N ++LGSD+EKVVKPNL LL+QCG+ DF T P R P ++++
Sbjct: 162 NVLMALKANGAILGSDVEKVVKPNLALLQQCGIHVCDFPHTRLPTVLCR----PPNHVQE 217
Query: 224 AVARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLV 283
AVAR+ E G+ + S +FR+ L+ A+ +KE +A KI V+E G+S D+L M +RK P ++
Sbjct: 218 AVARIGEFGVPQYSPVFRNALVPFAYQNKEKLAAKIGVLEMFGWSEDDLSMTMRKGPVVM 277
Query: 284 ASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCEL 343
S E++R+ EFL RDV LE RYIA RP++ YS KGLLD EL
Sbjct: 278 NMSVERLRKNVEFLTRDVKLETRYIARRPIMISYSLERRLLPRHRLLRFLSAKGLLDGEL 337
Query: 344 DYYNTAAMSERKFVRKFVDPYKCHIPGLADAYTSSCAGET 383
D+Y+ A++E+KF+ KFV KC I A+AY SS G+
Sbjct: 338 DFYSAVALTEKKFLDKFVHSCKCSIADPANAYASSFVGDV 377
>Os06g0224400 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 219/378 (57%), Gaps = 4/378 (1%)
Query: 4 HLRRHMISLLLRPAYPHPTAAISPXXXXXXXXXFSTTAAPVSPEPFAVEDYLVATWGLTG 63
HLRR +S LL P P P + + AVEDYLV + GLT
Sbjct: 3 HLRRSFLSRLLHPPCPTPANPLPLHRLLSSAAAAAPIPPEPF----AVEDYLVDSCGLTR 58
Query: 64 AQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLARRVD 123
A+A+KAS KLSHLRSPS PDAVLAFLS LGL IAAV DP F+CA V+ LA RV
Sbjct: 59 ARAKKASGKLSHLRSPSNPDAVLAFLSGLGLSRPDIAAVVVNDPLFICARVDKTLATRVA 118
Query: 124 ELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLLGSDL 183
EL LGLSRSQIARL+P+ + FR S+ L F L + GSFD+ L+ ++ N +L S++
Sbjct: 119 ELTDLGLSRSQIARLIPVVRSLFRCKSLAPRLAFLLTVFGSFDRCLEVIKTNYGVLSSNV 178
Query: 184 EKVVKPNLELLKQCGMSDFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRMFRHG 243
E V+KPNL +LK+CG+S + SR+ + +L +AV E G + +R+F +
Sbjct: 179 EAVIKPNLAVLKECGISIADRPSYAFASRVISRPTKHLEEAVVLANEFGAKQGTRVFTNA 238
Query: 244 LIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRDVGL 303
++ +E +A+K++ ++LG+S+D+L + +R P ++A EE++R+ +FL DVGL
Sbjct: 239 VMIFGILGQEKLAKKLEFFKKLGWSQDDLSLAVRSMPHILAMKEERMRRGMKFLTEDVGL 298
Query: 304 EGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCELDYYNTAAMSERKFVRKFVDP 363
E YIA RP L +YS GLL D+YN + +S F+ KFV P
Sbjct: 299 EIPYIARRPALTMYSIERRLLPRHCLINVLKGNGLLKANYDFYNISVISNDDFMEKFVQP 358
Query: 364 YKCHIPGLADAYTSSCAG 381
Y +PGL DAY SSC G
Sbjct: 359 YVESVPGLGDAYASSCTG 376
>Os06g0225100 Mitochodrial transcription termination factor-related family
protein
Length = 404
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 215/333 (64%), Gaps = 6/333 (1%)
Query: 49 FAVEDYLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPR 108
FAVE+YLVAT LT QA KASK +SHL+SPS+PDAV+AFL+ LGL IAA DPR
Sbjct: 49 FAVEEYLVATCHLTPDQATKASKSISHLKSPSRPDAVVAFLAGLGLSAADIAAAVAYDPR 108
Query: 109 FLCADVESNLARRVDELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKI 168
LCA+V+ LA R+ EL GLGLS SQIARLV + FR +V + L +++ + GSF+ +
Sbjct: 109 LLCAEVDRTLAPRLAELAGLGLSPSQIARLVLVDPARFRRPTVISKLQYYVPLFGSFETL 168
Query: 169 LKALRMNSSLLGSDLEKVVKPNLELLKQCGMS--DFAT-SFPLYTSRLFTANPIYLRDAV 225
L+AL+ NS LL SDLEKVVKPN+ LL++CG+ D A PL RL T +P +RD V
Sbjct: 169 LQALKNNSYLLSSDLEKVVKPNVALLRECGLGACDIAKLCIPL--PRLLTTSPERVRDMV 226
Query: 226 ARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQ-VMEELGFSRDELLMIIRKAPQLVA 284
A+ E +G+ R S+MFRH ++AVA+ S+E +A K+Q +M+ L +S E + + K P ++
Sbjct: 227 AQAENVGVRRGSKMFRHAILAVAYISEEKIAAKMQFLMKTLKWSDAEARIAVSKLPVVLR 286
Query: 285 SSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCELD 344
SSE+K+ + +EFL +VGLE YIA+RP + YS GL++ +
Sbjct: 287 SSEDKLSRVSEFLISEVGLEPAYIAYRPAMLTYSLERRLMPRHCVLKYLKDNGLIESDKS 346
Query: 345 YYNTAAMSERKFVRKFVDPYKCHIPGLADAYTS 377
YY+ ++E FV K++ PY+ P LA+ Y +
Sbjct: 347 YYSAVQVTEEVFVEKYISPYEDTAPHLAEDYAA 379
>Os11g0206600 Mitochodrial transcription termination factor-related family
protein
Length = 392
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 147/351 (41%), Positives = 214/351 (60%), Gaps = 7/351 (1%)
Query: 37 FSTTAAPVSPEPFAVEDYLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPP 96
FST A P + PF+VE+YLVAT GLTGAQA KASKKLSHLRSP+KPDAVLA LS +GL
Sbjct: 37 FSTAAGPDTAPPFSVEEYLVATCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSR 96
Query: 97 RKIAAVATADPRFLCADVESNLARRVDEL-GGLGLSRSQIAR-LVPLALTCFRSSSVGTN 154
+AAV ADP LCA N+ARR+ L +GLS + +AR L+ R +
Sbjct: 97 ADLAAVVAADPMLLCARAR-NVARRLHSLRDRVGLSDADVARFLLAGGAMGLRKCDIAPR 155
Query: 155 LGFWLQIVGSFDKILKALRMNSSLLGSDLEKVVKPNLELLKQCGMS--DFATSFPLYTSR 212
L FW+ VGSFDK+L AL+ N+ +L SDL+KVVKPN+ LL++CG+S + A L +
Sbjct: 156 LEFWIGFVGSFDKLLPALKGNNGILMSDLDKVVKPNIALLQECGLSVCEIAKLSTLKWT- 214
Query: 213 LFTANPIYLRDAVARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQVMEE-LGFSRDE 271
+ + +P ++ +V VE+L + RSS F+H L + + S++ +A K++ + LG S D+
Sbjct: 215 VLSLSPERVKASVLCVEKLVVPRSSDRFKHVLKSACWISEDMLAMKMEFLRSTLGCSEDK 274
Query: 272 LLMIIRKAPQLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXX 331
L + +P + S++ + + +FL +VGLE +I RP + YS
Sbjct: 275 LRAAVCISPHIFYLSDKNLCRKIDFLISEVGLEREFIVERPWVLGYSLEKRMVPRHSVMK 334
Query: 332 XXXMKGLLDCELDYYNTAAMSERKFVRKFVDPYKCHIPGLADAYTSSCAGE 382
GL+ +D+ ++ SE+KFV +++DPYK P LAD+Y ++CAG+
Sbjct: 335 ILRTMGLMKDAVDFSSSLVYSEKKFVARYIDPYKQAAPTLADSYAAACAGK 385
>Os11g0206200 Mitochodrial transcription termination factor-related family
protein
Length = 406
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 201/343 (58%), Gaps = 9/343 (2%)
Query: 48 PFAVEDYLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADP 107
PF+VE+YLV T GLTGAQA KASKKLSHLRSP+KPDAVLA LS +GL +AAV +DP
Sbjct: 60 PFSVEEYLVDTCGLTGAQALKASKKLSHLRSPAKPDAVLAVLSGVGLSRADLAAVVASDP 119
Query: 108 RFLCADVESNLARRVDEL-GGLGLSRSQIAR-LVPLALTCFRSSSVGTNLGFWLQIVGSF 165
+ LCA + N+ARR+ L +GLS QI L+ + V + L FW+ +GSF
Sbjct: 120 QLLCARAD-NIARRIASLRDRVGLSDPQIGSFLLAGGAKGIHACDVASRLEFWIPFLGSF 178
Query: 166 DKILKALRMNSSLLGSDLEKVVKPNLELLKQCGMS--DFATSFPLYTSRLFTANPIYLRD 223
+ +L+ L+ N+ L+ SDLEKV+KPN+ LL++CG++ D A + R+FT+NP +
Sbjct: 179 ETLLRILKGNNVLVLSDLEKVIKPNIALLQECGLTVCDIA-KMARFAPRMFTSNPKQVEG 237
Query: 224 AVARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQVME-ELGFSRDELLMIIRKAPQL 282
V R +ELG+ R+S F++ + A S+ S +++ + LG S D+L ++K PQ+
Sbjct: 238 FVRRADELGVPRTSGQFKYMVGIFANISEGSATARMEYLSRSLGCSMDKLRSAVQKLPQI 297
Query: 283 VASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGL--LD 340
+ SE + EFL V LE Y+ P LF YS KGL L
Sbjct: 298 LGLSETNLGSKIEFLVGKVRLEPEYLLKTPKLFTYSLEKRLVARHYIVQVLAAKGLKGLK 357
Query: 341 CELDYYNTAAMSERKFVRKFVDPYKCHIPGLADAYTSSCAGET 383
++ + + + E FV+ F+D ++ +PGL+DAY + AG+
Sbjct: 358 KDVPFCSYVQLGESCFVKNFIDQHENVVPGLSDAYAALRAGKV 400
>Os11g0246100 Mitochodrial transcription termination factor-related family
protein
Length = 417
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 142/392 (36%), Positives = 203/392 (51%), Gaps = 23/392 (5%)
Query: 4 HLRRHMISLLLRPAYPHPTAAISPXXXXXXXXXFSTTAAPVSPEPFAVEDYLVATWGLTG 63
HLR H++ LL H + + +TAA PF+VE YL+AT GLT
Sbjct: 3 HLRNHLLPLL------HAATSTASSSPLHLTHRLLSTAAR---SPFSVEHYLIATCGLTA 53
Query: 64 AQARKASKKLSHLRSPSKPDAVLAFLS-------DLGLPPRKIAAVATADPRFLCADVES 116
AQAR+AS KLS L S S PDAVLA LS L L +AAV A+PR L A
Sbjct: 54 AQARRASPKLSRLNSSSNPDAVLALLSSSAAGLDSLSLSRADLAAVVAAEPRLLRAR-PG 112
Query: 117 NLARRVDEL-GGLGLSRSQI-ARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRM 174
+ARR+ L G LS QI + L+ SS V L FW+ +GSFD +LK LR
Sbjct: 113 TIARRIASLRGRANLSAPQIRSFLMSGGAAHLASSDVSPKLAFWVPFLGSFDMLLKILRR 172
Query: 175 NSSLLGSDLEKVVKPNLELLKQCGMS--DFATSFPLYTSRLFTANPIYLRDAVARVEELG 232
+++L +D+++VV+PN+ LL +CG+ D + L T NP L+ V R EELG
Sbjct: 173 CNAILATDVDRVVRPNVALLGECGLGVCDI-VQMTQTAAWLLTFNPERLKIVVRRAEELG 231
Query: 233 LDRSSRMFRHGLIAVAFTSKESVARKIQVME-ELGFSRDELLMIIRKAPQLVASSEEKIR 291
+ SS F+ + VA ++ ++A +++ + LG S D+L I + P ++ SE+ +R
Sbjct: 232 VPTSSWAFKDAVCTVARNNEGTIAARMEFLRGTLGCSMDKLRSAISRKPSILGFSEKTLR 291
Query: 292 QAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCELDYYNTAAM 351
EFL V LE YI RPV+ S KGL+ ++DYY+
Sbjct: 292 GKIEFLLTKVQLETEYILQRPVMLTLSLDKRLAPRHYVLQALVEKGLIKNDVDYYSCVCF 351
Query: 352 SERKFVRKFVDPYKCHIPGLADAYTSSCAGET 383
FV +++D ++ +PGL DAY + AG++
Sbjct: 352 GNEHFVARYIDRHEDALPGLTDAYAAVHAGKS 383
>Os02g0749900 Mitochodrial transcription termination factor-related family
protein
Length = 382
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 201/376 (53%), Gaps = 17/376 (4%)
Query: 14 LRPAYPHPTAAISPXXXXXXXXXFSTTAAPVSPEPFAVEDYLVATWGLTGAQARKASKKL 73
LR A+P P + S S + A +SP F ED LVA GLTGA+A KASK+L
Sbjct: 12 LRAAFPLPASHFS-------SRLLSASTATLSPTRFVDEDALVAACGLTGAEALKASKRL 64
Query: 74 SHLRSPSKPDAVL---AFLSDLGLPPRKIAAVATADPRFLCADVESNLARRVDELGGLGL 130
+ PS DA L AFL+D L IAA ++ PRFL V+ L +V L +GL
Sbjct: 65 Q--KVPSNLDAALTFLAFLADFRLSKDDIAAASSRYPRFLHLKVDETLTSQVARLRDIGL 122
Query: 131 SRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLL-GSDLEKVVKP 189
S +I RL+ +A + + L F+L +GS+ ++ ALR NSSLL +++E VKP
Sbjct: 123 STPEIGRLITIAPCILSNPRTISRLEFYLSFLGSYPRVHSALRNNSSLLRRNNIESEVKP 182
Query: 190 NLELLKQCGMS--DFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRMFRHGLIAV 247
N+ L+QCG++ D A + SR+ P ++++ VA ++ G+ R S FR+ L+AV
Sbjct: 183 NIAFLEQCGLTTCDIAKIL-MSGSRILIMQPEHVKEIVACADKFGMPRESAGFRYALMAV 241
Query: 248 AFTSKESVARKIQVMEE-LGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRDVGLEGR 306
S V+ K+ + +G S +L + + + P ++ SE K+ ++ EFLK +VGLE +
Sbjct: 242 TGISPVRVSAKLDFLRMVIGCSDAQLHIAVSRFPLILTYSEVKLSRSLEFLKAEVGLEPQ 301
Query: 307 YIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCELDYYNTAAMSERKFVRKFVDPYKC 366
YI RP L YS KGLL + D+Y+ + E F +KF+ PY
Sbjct: 302 YIVLRPALLGYSIQKRLMPRYHVMKVLNEKGLLKKDTDFYSMVKIVEESFFKKFLLPYHR 361
Query: 367 HIPGLADAYTSSCAGE 382
+PGL AY ++ G+
Sbjct: 362 SVPGLEKAYLAAREGK 377
>Os11g0206300 Mitochodrial transcription termination factor-related family
protein
Length = 458
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 153/267 (57%), Gaps = 7/267 (2%)
Query: 48 PFAVEDYLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADP 107
PF+ EDYLVAT GLTG QA KASKK+SHLRS + PDAVLA LS +GL +AAV +DP
Sbjct: 45 PFSAEDYLVATCGLTGDQALKASKKISHLRSAANPDAVLAVLSGVGLSRADLAAVVASDP 104
Query: 108 RFLCADVESNLARRVDEL-GGLGLSRSQIAR-LVPLALTCFRSSSVGTNLGFWLQIV-GS 164
LCA + N++RRV L +GLS QI R L+ R V L FW+ + GS
Sbjct: 105 HLLCARPD-NVSRRVTSLRDRVGLSDPQIGRFLLAGGAMAVRKCDVAERLEFWIPFLGGS 163
Query: 165 FDKILKALRMNSSLLGSDLEKVVKPNLELLKQCGMSDFATSFPLYTSRLFTANPIYLRDA 224
F+ +LK LR N++++ +D+EKV+KPN+ L ++ G++ LFT NP + A
Sbjct: 164 FETLLKMLRRNNAIVRADVEKVIKPNIALFQESGLT--VRDIVKMPGWLFTFNPKRVEAA 221
Query: 225 VARVEELGLDRSSRMFRHGL-IAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLV 283
V R +LG++ +S ++ L IA T + AR + L S D++ ++ K P ++
Sbjct: 222 VERTGKLGVELASSRLKYMLSIAGNITEGNASARMKYLSSTLNCSMDKVEYMVGKMPTII 281
Query: 284 ASSEEKIRQAAEFLKRDVGLEGRYIAH 310
SEEK+R EFL + I H
Sbjct: 282 TLSEEKLRSKIEFLSSTLNCCVDKIGH 308
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 265 LGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXX 324
LG S D + +++ K P ++ S + + EFL VGLE YI +PVLF S
Sbjct: 335 LGCSIDNICVMVYKMPSILGLSVNNLCRKIEFLVTKVGLEPDYILSKPVLFACSLEKRLM 394
Query: 325 XXXXXXXXXXMKGLLDCELDYYNTAAMSERKFVRKFVDPYKCHIPGLADAYTSSCAGET 383
KGL+ + A + E+ FV +++D +K +PGLADAY + C+G+
Sbjct: 395 PRHYIVEVLLAKGLIK-NAGFLTYAILREKDFVARYIDQHKNAVPGLADAYATICSGKV 452
>Os06g0224500 Mitochodrial transcription termination factor-related family
protein
Length = 330
Score = 148 bits (373), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 4 HLRRHMISLLLRPAYPHPTAAISPXXXXXXXXXFSTTAAPVSPEPFAVEDYLVATWGLTG 63
HLRR ++S LL+P P TAA + A EPFAVEDYLV + GLT
Sbjct: 3 HLRRCVLSRLLQP--PCLTAATHANSLLSLHLRRLLSGAA---EPFAVEDYLVESCGLTR 57
Query: 64 AQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLARRVD 123
A+A K S KLSHLRSPSKPDAVLA LS LGL IAA +DPR LCA V+ L RV
Sbjct: 58 ARAEKVSGKLSHLRSPSKPDAVLAILSGLGLTRPDIAAAVASDPRLLCARVDRTLDARVA 117
Query: 124 ELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLL 179
ELGG+GLSRSQIARL+PLA FR S+G+ L F + + G L A++ + L
Sbjct: 118 ELGGIGLSRSQIARLIPLARGGFRIKSLGSKLAFLVTVPGGCQDELWAIKPGTRLF 173
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%)
Query: 237 SRMFRHGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEF 296
+R+F ++ A S+ + +K + ++LG+S+++L + + P ++A E+++RQ +F
Sbjct: 170 TRLFALAVVKFAILSQGKITKKSGLFKKLGWSQEDLSLAAKNMPSILAMGEKRLRQRMKF 229
Query: 297 LKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLDCELDYYNTAAMSERKF 356
L DVGLE YIA RP L YS GLL D+Y+TA +S KF
Sbjct: 230 LTEDVGLEIPYIAQRPALMFYSIERRLLPRHCLINVLKRNGLLKINYDFYSTALISNEKF 289
Query: 357 VRKFVDPYKCHIPGLADAYTSSCAG 381
+ KFV PY +PG+ DAY SSCAG
Sbjct: 290 LDKFVHPYVESVPGIGDAYASSCAG 314
>Os02g0749800 Mitochodrial transcription termination factor-related family
protein
Length = 168
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 222 RDAVARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQVMEE-LGFSRDELLMIIRKAP 280
+DAV R +LG+ S+MFRH L ++ + K+ V++E LG+S++E+ + + KAP
Sbjct: 1 KDAVRRAIQLGVAPGSQMFRHALSTAGCIGQDKIDAKVAVLKESLGWSQEEVNLAVSKAP 60
Query: 281 QLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLD 340
+++ +SEE++R+ AEFL +VGL+ +Y+A R VL +YS +GL++
Sbjct: 61 RILVASEERLRRNAEFLIDEVGLQPQYVARRSVLLMYSLERRLVPRHLVVKLLKERGLIE 120
Query: 341 CELDYYNTAAMSERKFVRKFVDPYKCHIPGLADAYTSSCAGET 383
+ ++N A +E KF+ KFV P++ +PGLADAY S+CAG+T
Sbjct: 121 QDRCFFNAVAPTEEKFLEKFVVPFEGCVPGLADAYESACAGKT 163
>Os04g0637500 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 173/373 (46%), Gaps = 14/373 (3%)
Query: 21 PTAAISPXXXXXXXXXFSTTAAPVSPEPFAVEDYLVATWGLTGAQARKASKKLSHLRSPS 80
P A +S FST P S P + YLV+ GL+ A A KA+ + +HL S S
Sbjct: 26 PLAFLSSESRGHLVRRFST---PSSTPPHFMVQYLVSKCGLSPAAAAKAAPRFAHLDSAS 82
Query: 81 KPDAVLAFLSDLGLPPRKIAAVATADPRFLCADVESNLARRVDELGGLGLSRSQIARLV- 139
+PDA LAFL GL ++ V + P L +DV++ L + + LGL R+ +ARL
Sbjct: 83 RPDAALAFLRSQGLTRAQVREVVSWKPELLLSDVDATLDPKFRAVRALGLGRADVARLFA 142
Query: 140 --PLALTCFRSSSVGTNLGFWLQIVGSFDKILKALRMNSSLLGSDLEKVVKPNLELLKQC 197
P ALT +++ + FW+ +GS ++K L + LL ++ +++ NL L+
Sbjct: 143 LYPPALTYGIHTNLLPRVLFWIDFLGSAKLLMKWL-AKTWLLRYSVDALLR-NLSTLRSL 200
Query: 198 GM--SDFATSFPLYTSRLFTANPIYLRDAVARVEELGLDRSSRMFRHGLIAVAFTSKESV 255
G+ S T+ + + L T P + V RVE G+ SS M+ A+ S+ S
Sbjct: 201 GVQQSRITTTVRMQPT-LITQTPARFQKLVGRVEACGVPPSSGMYMWAFFALHNVSEGSF 259
Query: 256 -ARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVL 314
A+K V+ G + +E + R+AP LV +R+ EFL + G + +I PVL
Sbjct: 260 RAKKAAVVGAAGCTEEEFDAMFRRAPCLVFVPAALLRRKVEFLMAEAGCDATHIVTNPVL 319
Query: 315 FLYSXXXXXXXXXXXXXXXXMKGL-LDCELDYYNTAAMSERKFVRKFVDPYKCHIPGLAD 373
S +G+ + + + + E KFV ++V YK +P L +
Sbjct: 320 LTLSLGKRMAPRCRVVEALRSRGVGIGKKANLGSVMRYPEDKFVERYVLRYKEEVPELLE 379
Query: 374 AYTSS-CAGETAN 385
Y C G +
Sbjct: 380 LYPPRLCKGSSQT 392
>Os08g0528700 Mitochodrial transcription termination factor-related family
protein
Length = 190
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 1/174 (0%)
Query: 210 TSRLFTANPIYLRDAVARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQVMEE-LGFS 268
++R+ T +P L+ V + E+L + S F++ + AVA +++ V +++ + LG S
Sbjct: 12 SARVLTFSPERLKVIVQQAEKLRMPGCSWAFKNAVGAVARSNEGIVNARMEFLSSSLGCS 71
Query: 269 RDELLMIIRKAPQLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXX 328
++L + K PQ++ SE K+ EFL VGLE YI RPVL YS
Sbjct: 72 MEKLRSAVCKCPQILGLSESKLHSKIEFLVGKVGLEPDYILQRPVLLTYSLEKRLLPRHY 131
Query: 329 XXXXXXMKGLLDCELDYYNTAAMSERKFVRKFVDPYKCHIPGLADAYTSSCAGE 382
+KGL+ +D+Y +S FV +++D ++ +PGLADAY + C+G+
Sbjct: 132 VVEVLLVKGLIKKTVDFYGCVCVSNEDFVARYIDHHENAVPGLADAYAAVCSGK 185
>Os07g0423000 Mitochodrial transcription termination factor-related family
protein
Length = 408
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 159/348 (45%), Gaps = 9/348 (2%)
Query: 37 FSTTAAPVSPEPFAVE-DYLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLP 95
S TA + EP ++ +L T GL+ +A A+ ++ LRS K A++A +G
Sbjct: 53 LSGTATGAACEPCSLTLHFLRNTCGLSEDEAAAAAARV-RLRSTKKAHAIVALFRGIGFS 111
Query: 96 PRKIAAVATADPRFLCADVESNLARRVDELG-GLGLSRSQIARLV---PLALTCFR-SSS 150
IA + T++P L ++ L +++ LGL+ ++I RLV P + +
Sbjct: 112 AADIARLVTSNPSLLSYRADATLMPKIEFFRRELGLTDAEIRRLVLANPYRVLRYSLKRC 171
Query: 151 VGTNLGFWLQIVGSFDKILKALRMNSSLLGSDLEKVVKPNLELLKQCG-MSDFATSFPLY 209
+ N ++GS + A+ ++ L+ D+ ++ P +++L+ G +D
Sbjct: 172 IRPNYLILRDLLGSDKNVTAAVLQSTDLIHGDVRGILLPKIKILQDYGATNDVIVKLVTT 231
Query: 210 TSRLFTANPIYLRDAVARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQVMEELGFSR 269
R +++A ++ELG+ SS MF + A ++ LG+++
Sbjct: 232 HPRALMHRASRFEESLAAMKELGVRPSSGMFPYSFGLFARLHPRKWKGRMDNFLSLGWTK 291
Query: 270 DELLMIIRKAPQLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXX 329
++++ + P ++ S +K++ +FL + + Y+A P++ +S
Sbjct: 292 EQVIEAFVRHPYCMSVSNDKVKLIWQFLAKKLRWTTDYVARSPMVLSFSYDKRILPRCTV 351
Query: 330 XXXXXMKGLLDCELDYYNTAAMSERKFVRKFVDPYKCHIPGLADAYTS 377
+G+ + ++ + + E+KF K+V PY+ IP + +AY+S
Sbjct: 352 LNLLASRGIFNRDIKT-SHLVLGEKKFKEKYVTPYQDEIPEVLEAYSS 398
>Os05g0403600 Mitochodrial transcription termination factor-related family
protein
Length = 399
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 152/348 (43%), Gaps = 13/348 (3%)
Query: 37 FSTTAAPVSPEPFAVED---YLVATWGLTGAQARK--ASKKLSHLRSPSKPDAVLAFLSD 91
+S+TA +P D YLV + GL A AR A+ + +RS K DAV L
Sbjct: 40 YSSTAVTGGSDPEPCPDTVSYLV-SCGLPPAVARHTAANTRGLRIRSTEKADAVRTLLRS 98
Query: 92 LGLPPRKIAAVATADPRFLCADVESNLARRVDELGGLGLSRSQIARLVPLALTCFRSSSV 151
G +A +A + P L D + + +++ +G S+++ PL L +
Sbjct: 99 YGFSDADVARIARSAPLLLTVDPDRIIRPKLEFFATMGFQPSKLS-TAPLLLARSLEKHL 157
Query: 152 GTNLGFWLQIVGSFDKILKAL-RMNSSLLGSDLEKVVKPNLELLKQCGMS---DFATSFP 207
+ F I+GS D I + R+ +LL S L+ ++P +E L + G++ D +
Sbjct: 158 VPTIQFLRSIIGSDDGIRRGFSRIPRALLVS-LDNCMRPAVEALHRHGLTGREDVSKVLV 216
Query: 208 LYTSRLFTANPIYLRDAVARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQVMEELGF 267
L L +P+ + + ++ +G+ + F + A+ + + RK+ + G
Sbjct: 217 LQMGVLML-SPVRIGEIFEDLKAMGMSITDGRFANSFRAMCSMRRATWLRKVALYRSFGL 275
Query: 268 SRDELLMIIRKAPQLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXX 327
S E+ +K P + ++E I++ A F + + LE R + PV+ YS
Sbjct: 276 SESEVFEAFKKQPTALLGADETIKKNASFFRDALKLEMREVMVHPVVMAYSFEKTILPRC 335
Query: 328 XXXXXXXMKGLLDCELDYYNTAAMSERKFVRKFVDPYKCHIPGLADAY 375
+G ++ ++ + S + F ++VD + +P + +AY
Sbjct: 336 AVLSVLMREGKINPDIQLLHALLGSAKTFSGRYVDRFAADVPDVVEAY 383
>Os07g0496500
Length = 175
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 51 VEDYLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLG-LPPRKIAAVATADPRF 109
VEDYLV T+ LT + K + LSHL SP KPDA +AFLS L L IAA A+ R
Sbjct: 85 VEDYLVTTYSLTRDKVWKVTNSLSHLSSPCKPDAAVAFLSSLTRLLHSSIAAAVAANLRL 144
Query: 110 LCADVESNLAR 120
LCADVE NLA+
Sbjct: 145 LCADVEKNLAK 155
>Os05g0403400 Mitochodrial transcription termination factor-related family
protein
Length = 393
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 7/326 (2%)
Query: 54 YLVATWGLTGAQARKASKKLSHLRSPSKPDAVLAFLSDLGLPPRKIAAVATADPRFLCAD 113
YLVA+ GL+ A A + S+K + RS + +AV++ L G IA V P L +
Sbjct: 60 YLVASVGLSPAAAARISRK-ARFRSNADAEAVVSLLRGHGFSDANIAQVLPKIPGLLILN 118
Query: 114 VESNLARRVDELGGLGLSRSQIARLVPLALTCFRSSSVGTNLGFWLQIVGSFDKILKALR 173
+ L +++ LG+ S ++R PL V + F +VG+ + A+
Sbjct: 119 PDKILRPKLEYFASLGVVPSALSR-APLLARSLEKHLVPC-VEFIRGVVGTDANLCAAIS 176
Query: 174 MNSSLLGSDLEKVVKPNLELLKQCGMSDFATS-FPLYTSRLFTANPIYLRDAVARVEELG 232
N L D+ ++P +E L++ G+++ S + T +P + +E L
Sbjct: 177 RNPWALWCDINSSMRPAVESLRRHGLAEANISRLVVINLSALTMSPDRIDGIFGDLEALE 236
Query: 233 LDRSSRMFRHGLIAVAFTSKESVARKIQVMEELGFSRDELLMIIRKAPQLVASSEEKIRQ 292
L S F +G A++ + + ++ V G SR ELL R+ P ++ + + I++
Sbjct: 237 LPISHSRFVYGFWALSRLKRGAWEERMSVFMRFGVSRSELLKAFREQPGILVFTAKTIQR 296
Query: 293 AAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLLD---CELDYYNTA 349
F + + + + P+L +S +G + E+D
Sbjct: 297 KLSFYQEKLKVAPADVIAHPLLLTFSLEKNIIPKCAVLNVLLREGKIKRYGREMDLLRPL 356
Query: 350 AMSERKFVRKFVDPYKCHIPGLADAY 375
S F +FV Y+ +P + AY
Sbjct: 357 QRSNISFFERFVRKYEEDVPDVVKAY 382
>Os11g0206501
Length = 266
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 221 LRDAVARVEELGLDRSSRMFRHGLIAVAFTSKESVARKIQVMEE-LGFSRDELLMIIRKA 279
++ V R + LG+ R S FR +AV T++ SV +++ + LG S D +L+ + K
Sbjct: 81 IKRYVHRADMLGVPRCSPAFR---MAVCSTNEGSVTARMEFLSRTLGCSMDNILIAVGKR 137
Query: 280 PQLVASSEEKIRQAAEFLKRDVGLEGRYIAHRPVLFLYSXXXXXXXXXXXXXXXXMKGLL 339
P ++ S + +R+ EFL +VGL+ I + YS +GL+
Sbjct: 138 PTILGLSMDNLRRKIEFLVTEVGLKLECIVECLGILRYSLEKRMVPRHSVMEILRARGLM 197
Query: 340 DCELDYYNTAAMSERKFVRKFVDPYKCHIPGLADAYTSSCAGE 382
Y E FV +++D +K + GLADAY +SC G+
Sbjct: 198 KKGASLYGLIMQGEADFVARYIDTHKDMVHGLADAYNASCFGK 240
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,465,158
Number of extensions: 426907
Number of successful extensions: 1224
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 24
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)