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Os05g0403600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mitochodrial transcription termination factor-related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.5 (0.033) R2 : 0.844
β1 : 3.58 (0.121) R2dD : 0.315 R2D : 0.279
β2 : 3.49 (0.0895) R2dC : 0.568 R2C : 0.403
β3 : 1.27 (0.0944) R2dE : 0.0737 R2E : -0.04
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.04 (0.0725) R2dN8 : 0.101 R2N8 : -0.0334
σ : 0.614
deviance : 173.62
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C
peak time of C : 17.5
E
wheather : humidity
threshold : 91.32
memory length : 753
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22.5
open length of G : 1.57

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.58 0.606 7.5 3.54 3.49 1.31 1.97 0.404 1.03 17.5 91.42 745 22.5 1.6
166.69 0.601 7.5 3.6 3.49 1.3 1.69 -- 1.04 17.5 91.42 753 22.5 1.6
173.52 0.614 7.49 3.58 3.47 1.29 -- -0.235 1.05 17.5 91.89 752 22.5 1.61
173.62 0.614 7.5 3.58 3.49 1.27 -- -- 1.04 17.5 91.32 753 22.5 1.57
702.46 1.23 7.39 4.23 -- 1.82 -- -1.67 1.25 -- 89.98 47520 22.2 1.25
238.9 0.725 7.56 3.79 3.12 -- 1.2 -- 0.791 17.6 -- -- -- --
242.42 0.729 7.55 3.78 3.13 -- -- -- 0.797 17.5 -- -- -- --
700.67 1.23 7.41 3.88 -- 1.68 -- -- 1.18 -- 89.45 47520 22.9 0.0777
498.24 1.04 7.52 -- 3.51 1.62 -- -- 1.02 17.5 90.24 771 22.9 1.02
751.18 1.28 7.51 3.68 -- -- -- -- 0.721 -- -- -- -- --
619.48 1.16 7.65 -- 3.07 -- -- -- 0.375 17.6 -- -- -- --
990.62 1.47 7.65 -- -- 2.22 -- -- 0.0862 -- 58.14 47520 22 0.0333
1108.41 1.55 7.6 -- -- -- -- -- 0.312 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.63 humidity 90.0 720 > th dose dependent rect. 22 3
10 180.08 humidity 90.0 720 > th dose independent rect. 22 2
15 180.85 humidity 90.0 720 > th dose dependent rect. 15 10
16 181.01 humidity 90.0 720 > th dose dependent rect. 9 16
28 182.02 humidity 90.0 720 > th dose independent rect. 21 4
50 185.91 humidity 70.0 720 > th dose dependent rect. 19 7
64 187.09 humidity 90.0 720 > th dose dependent sin 17 NA
88 188.78 humidity 90.0 720 < th dose dependent rect. 18 13
93 189.25 humidity 60.0 1440 > th dose dependent rect. 12 19
102 189.36 humidity 50.0 1440 > th dose dependent rect. 14 17
130 190.08 humidity 90.0 720 < th dose independent rect. 20 4
140 190.24 humidity 90.0 720 < th dose dependent rect. 19 4
158 190.69 humidity 70.0 14400 > th dose independent rect. 19 12
159 190.70 humidity 70.0 14400 > th dose independent rect. 19 2
160 190.74 humidity 70.0 14400 > th dose independent rect. 19 10
183 190.95 humidity 70.0 14400 > th dose independent rect. 19 6
187 191.03 humidity 50.0 1440 > th dose dependent sin 14 NA
189 191.08 humidity 90.0 720 < th dose dependent rect. 20 1
218 191.64 humidity 70.0 720 > th dose dependent rect. 18 14
316 193.19 humidity 90.0 720 > th dose independent rect. 5 20
343 193.44 humidity 90.0 720 > th dose independent rect. 9 16
365 193.71 humidity 70.0 1440 > th dose dependent rect. 19 22
400 194.04 radiation 20.0 14400 > th dose dependent rect. 16 16
451 194.48 humidity 80.0 1440 > th dose independent rect. 10 22
491 194.90 humidity 90.0 720 > th dose independent sin 15 NA
494 194.91 radiation 1.0 1440 < th dose dependent rect. 18 23
495 194.92 humidity 70.0 1440 > th dose dependent no NA NA
513 195.01 humidity 90.0 1440 < th dose dependent rect. 14 17
518 195.04 humidity 70.0 1440 > th dose dependent rect. 2 23
535 195.19 humidity 70.0 14400 < th dose independent rect. 19 12
536 195.19 humidity 70.0 1440 > th dose dependent rect. 22 23
539 195.21 radiation 20.0 14400 < th dose independent rect. 16 16
547 195.26 humidity 70.0 1440 > th dose dependent rect. 5 23
566 195.35 wind 3.0 43200 < th dose dependent rect. 2 3
590 195.52 humidity 70.0 14400 < th dose independent rect. 19 2
613 195.63 humidity 80.0 1440 < th dose independent rect. 10 22
618 195.67 temperature 20.0 1440 > th dose dependent rect. 14 1
675 195.95 radiation 20.0 14400 > th dose dependent rect. 6 2
690 195.97 humidity 60.0 43200 < th dose independent rect. 14 2
691 195.97 radiation 1.0 1440 > th dose independent rect. 12 18
702 196.03 humidity 90.0 1440 < th dose dependent sin 14 NA
709 196.07 humidity 90.0 43200 < th dose independent rect. 20 1
731 196.18 precipitation 0.1 43200 < th dose independent rect. 15 2
734 196.18 precipitation 0.1 43200 < th dose dependent rect. 15 2
745 196.24 precipitation 0.1 43200 > th dose independent rect. 15 2
775 196.34 radiation 10.0 14400 < th dose independent rect. 11 22
783 196.37 wind 9.0 43200 > th dose dependent rect. 18 1
819 196.55 precipitation 0.1 43200 > th dose dependent rect. 14 3
839 196.61 radiation 30.0 14400 < th dose independent sin 12 NA
845 196.62 humidity 80.0 43200 > th dose dependent rect. 20 1
850 196.65 humidity 60.0 43200 > th dose independent rect. 15 1
865 196.70 radiation 20.0 14400 < th dose independent rect. 24 8
874 196.71 radiation 10.0 14400 < th dose independent rect. 13 18
890 196.74 radiation 20.0 14400 < th dose independent rect. 6 2
896 196.75 humidity 80.0 1440 > th dose independent rect. 10 12
906 196.78 radiation 1.0 1440 < th dose independent rect. 12 18
930 196.84 humidity 60.0 43200 > th dose independent rect. 14 3
944 196.89 radiation 10.0 14400 < th dose independent rect. 16 23
981 197.04 precipitation 0.1 43200 < th dose independent rect. 14 5
982 197.04 precipitation 0.1 43200 < th dose dependent rect. 14 5
989 197.09 precipitation 0.1 43200 > th dose independent rect. 14 5
995 197.10 radiation 10.0 14400 < th dose independent rect. 8 23