Os06g0224900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0224900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Mitochodrial transcription termination factor-related family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.51 | 0.242 | 10.3 | 0.422 | 0.488 | 0.614 | -0.203 | -0.442 | 0.0542 | 14.7 | 78.67 | 1410 | -- | -- |
| 26.74 | 0.241 | 10.3 | 0.383 | 0.484 | 0.607 | -0.209 | -- | 0.0527 | 14.7 | 78.89 | 1405 | -- | -- |
| 26.65 | 0.24 | 10.3 | 0.424 | 0.484 | 0.611 | -- | -0.472 | 0.0584 | 14.7 | 78.52 | 1405 | -- | -- |
| 26.87 | 0.241 | 10.3 | 0.371 | 0.473 | 0.585 | -- | -- | 0.0406 | 14.7 | 78.14 | 1387 | -- | -- |
| 36.18 | 0.28 | 10.3 | 0.424 | -- | 0.79 | -- | -0.444 | 0.0561 | -- | 72.3 | 1161 | -- | -- |
| 31.46 | 0.263 | 10.3 | 0.426 | 0.508 | -- | -0.175 | -- | -0.0225 | 14.8 | -- | -- | -- | -- |
| 31.57 | 0.263 | 10.3 | 0.421 | 0.507 | -- | -- | -- | -0.0236 | 14.8 | -- | -- | -- | -- |
| 36.44 | 0.281 | 10.3 | 0.384 | -- | 0.772 | -- | -- | 0.0467 | -- | 72.12 | 1162 | -- | -- |
| 30.51 | 0.257 | 10.3 | -- | 0.487 | 0.636 | -- | -- | 0.0148 | 14.7 | 79.37 | 1429 | -- | -- |
| 46.48 | 0.319 | 10.3 | 0.4 | -- | -- | -- | -- | -0.0365 | -- | -- | -- | -- | -- |
| 36.25 | 0.282 | 10.3 | -- | 0.499 | -- | -- | -- | -0.0705 | 14.8 | -- | -- | -- | -- |
| 39.94 | 0.294 | 10.3 | -- | -- | 0.811 | -- | -- | 0.0159 | -- | 77.67 | 1159 | -- | -- |
| 50.7 | 0.332 | 10.3 | -- | -- | -- | -- | -- | -0.0809 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.86 | humidity | 90 | 1440 | > th | dose dependent | rect. | 9 | 15 |
| 3 | 25.89 | humidity | 90 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 10 | 26.00 | humidity | 90 | 1440 | > th | dose dependent | sin | 18 | NA |
| 17 | 26.10 | humidity | 90 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 20 | 26.14 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 33 | 26.20 | humidity | 70 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 44 | 26.23 | radiation | 20 | 10 | < th | dose dependent | sin | 0 | NA |
| 77 | 26.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 112 | 26.45 | humidity | 70 | 1440 | > th | dose dependent | sin | 14 | NA |
| 123 | 26.47 | humidity | 90 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 124 | 26.48 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 141 | 26.51 | humidity | 90 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 162 | 26.54 | humidity | 80 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 175 | 26.55 | humidity | 80 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 184 | 26.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 206 | 26.59 | humidity | 90 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 207 | 26.59 | humidity | 90 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 220 | 26.61 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 17 |
| 237 | 26.62 | humidity | 80 | 1440 | > th | dose dependent | no | NA | NA |
| 252 | 26.63 | humidity | 80 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 260 | 26.65 | humidity | 90 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 281 | 26.66 | humidity | 80 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 289 | 26.67 | humidity | 80 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 302 | 26.68 | humidity | 80 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 318 | 26.70 | humidity | 90 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 346 | 26.72 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 422 | 26.78 | humidity | 90 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 424 | 26.78 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 438 | 26.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 461 | 26.81 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 469 | 26.81 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 475 | 26.82 | humidity | 90 | 1440 | > th | dose independent | sin | 17 | NA |
| 491 | 26.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 507 | 26.84 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 540 | 26.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 558 | 26.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 559 | 26.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 576 | 26.88 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 583 | 26.88 | radiation | 20 | 30 | < th | dose independent | rect. | 12 | 23 |
| 602 | 26.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 603 | 26.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 614 | 26.90 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 616 | 26.90 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 665 | 26.92 | humidity | 80 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 977 | 27.06 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 990 | 27.06 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |