Os08g0528700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochodrial transcription termination factor-related family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0528700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Mitochodrial transcription termination factor-related family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.65 | 0.612 | 5.64 | 1.14 | 0.321 | -1.21 | -0.293 | 0.557 | 0.0628 | 18.2 | 49.68 | 3149 | -- | -- |
| 169.81 | 0.607 | 5.65 | 1.1 | 0.324 | -1.05 | -0.263 | -- | 0.0705 | 18.1 | 49.74 | 3143 | -- | -- |
| 169.81 | 0.607 | 5.64 | 1.14 | 0.323 | -1.19 | -- | 0.501 | 0.0634 | 17.9 | 49.86 | 3162 | -- | -- |
| 169.95 | 0.607 | 5.65 | 1.11 | 0.325 | -1.05 | -- | -- | 0.07 | 17.8 | 49.73 | 3156 | -- | -- |
| 175.13 | 0.616 | 5.64 | 1.13 | -- | -1.24 | -- | 0.604 | 0.0537 | -- | 49.91 | 3107 | -- | -- |
| 185.93 | 0.639 | 5.63 | 0.815 | 0.336 | -- | -0.175 | -- | 0.163 | 17.4 | -- | -- | -- | -- |
| 185.98 | 0.639 | 5.63 | 0.816 | 0.335 | -- | -- | -- | 0.162 | 17.2 | -- | -- | -- | -- |
| 175.33 | 0.617 | 5.64 | 1.1 | -- | -1.07 | -- | -- | 0.0614 | -- | 49.39 | 3098 | -- | -- |
| 198.33 | 0.656 | 5.66 | -- | 0.29 | -0.552 | -- | -- | 0.0345 | 17.7 | 50 | 3044 | -- | -- |
| 191.84 | 0.647 | 5.62 | 0.805 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 203.54 | 0.667 | 5.65 | -- | 0.321 | -- | -- | -- | 0.0716 | 17.3 | -- | -- | -- | -- |
| 202.77 | 0.663 | 5.66 | -- | -- | -0.667 | -- | -- | -0.00546 | -- | 49.19 | 2540 | -- | -- |
| 208.91 | 0.675 | 5.64 | -- | -- | -- | -- | -- | 0.0648 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.79 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 2 | 161.81 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 4 | 162.00 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 7 | 162.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 10 | 162.37 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 12 | 162.50 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 21 | 162.76 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 29 | 163.16 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 30 | 163.19 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 40 | 163.46 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 85 | 164.22 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 90 | 164.30 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 96 | 164.34 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 133 | 164.96 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 157 | 166.42 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 165 | 167.05 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 175 | 167.63 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 177 | 167.67 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 179 | 167.77 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 180 | 167.79 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 181 | 167.79 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 183 | 167.82 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 192 | 168.19 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 203 | 168.56 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 207 | 168.67 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 221 | 168.96 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 230 | 169.05 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 237 | 169.16 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 238 | 169.16 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 254 | 169.35 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 256 | 169.40 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 268 | 169.69 | wind | 7.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 270 | 169.69 | wind | 3.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 274 | 169.77 | wind | 3.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 276 | 169.78 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 277 | 169.78 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 281 | 169.81 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 297 | 169.95 | wind | 7.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 304 | 170.04 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 317 | 170.10 | wind | 3.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 328 | 170.17 | wind | 3.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 339 | 170.23 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 347 | 170.27 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 359 | 170.35 | wind | 3.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 362 | 170.35 | wind | 3.0 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 364 | 170.36 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 372 | 170.41 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 391 | 170.49 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 398 | 170.52 | temperature | 25.0 | 270 | < th | dose independent | sin | 7 | NA |
| 404 | 170.55 | wind | 3.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 410 | 170.57 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 11 |
| 416 | 170.59 | wind | 3.0 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 432 | 170.64 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 437 | 170.65 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 14 |
| 441 | 170.66 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 447 | 170.69 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 461 | 170.73 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 495 | 170.80 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 502 | 170.82 | wind | 3.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 511 | 170.83 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 563 | 170.98 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 584 | 171.04 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 585 | 171.04 | wind | 1.0 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 602 | 171.07 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 15 | 20 |
| 618 | 171.12 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 19 |
| 624 | 171.13 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 9 |
| 639 | 171.14 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 643 | 171.16 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 670 | 171.23 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 677 | 171.23 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 686 | 171.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 690 | 171.25 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 696 | 171.26 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 710 | 171.30 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 712 | 171.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 715 | 171.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 718 | 171.31 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 719 | 171.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 721 | 171.31 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 14 |
| 758 | 171.38 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 761 | 171.39 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 765 | 171.39 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 781 | 171.40 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 800 | 171.42 | wind | 3.0 | 43200 | < th | dose dependent | no | NA | NA |
| 805 | 171.44 | humidity | 50.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 810 | 171.45 | humidity | 50.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 813 | 171.45 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 5 |
| 827 | 171.46 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 15 |
| 828 | 171.46 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 18 |
| 848 | 171.50 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 850 | 171.50 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 853 | 171.51 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 899 | 171.54 | wind | 3.0 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 902 | 171.54 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 908 | 171.55 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 935 | 171.56 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 950 | 171.58 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 15 | 2 |
| 976 | 171.61 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 980 | 171.62 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 988 | 171.62 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 23 |