BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0440000 Os05g0440000|Os05g0440000
(327 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0440000 Zinc finger, Dof-type family protein 540 e-154
Os01g0865800 Similar to AOBP (Ascorbate oxidase promoter-bi... 248 6e-66
Os02g0707200 Similar to Zn finger protein (Fragment) 122 3e-28
Os03g0276300 115 3e-26
Os03g0585600 114 9e-26
Os07g0508900 Zinc finger, Dof-type family protein 114 1e-25
Os03g0821200 Similar to Zn finger protein (Fragment) 112 3e-25
Os02g0673700 Zinc finger, Dof-type family protein 112 4e-25
Os07g0236700 Similar to Dof2 (Fragment) 111 8e-25
Os02g0726300 Similar to AOBP (Ascorbate oxidase promoter-bi... 111 9e-25
Os02g0252400 Similar to Zn finger protein (Fragment) 110 1e-24
Os03g0764900 Similar to Zn finger protein (Fragment) 108 4e-24
Os12g0569900 Similar to Zn finger protein (Fragment) 106 2e-23
Os06g0284500 Zinc finger, Dof-type family protein 103 2e-22
Os08g0490100 Similar to PBF protein 102 5e-22
Os05g0112200 Similar to Zn finger protein (Fragment) 101 9e-22
Os01g0193300 100 2e-21
Os09g0475800 Similar to Zn finger protein (Fragment) 98 9e-21
Os01g0263900 Zinc finger, Dof-type family protein 94 9e-20
Os07g0685000 Similar to Dof3 gene (Fragment) 94 9e-20
Os03g0169600 Zinc finger, Dof-type family protein 94 2e-19
Os01g0758200 Similar to Dof2 (Fragment) 94 2e-19
Os12g0590700 93 3e-19
Os01g0277500 Similar to Dof3 gene (Fragment) 91 2e-18
Os03g0619100 Zinc finger, Dof-type family protein 90 2e-18
Os10g0406300 Similar to AOBP (Ascorbate oxidase promoter-bi... 87 2e-17
Os10g0496000 Zinc finger, Dof-type family protein 86 5e-17
Os04g0678400 Zinc finger, Dof-type family protein 85 6e-17
Os01g0673700 73 3e-13
AB028133 71 1e-12
>Os05g0440000 Zinc finger, Dof-type family protein
Length = 327
Score = 540 bits (1391), Expect = e-154, Method: Compositional matrix adjust.
Identities = 279/327 (85%), Positives = 279/327 (85%)
Query: 1 MLSSHCESMLXXXXXXXXXXXXXDHHQRRYRPNVEVAPNCPRCESPNTKFCYYNNYSLSQ 60
MLSSHCESML DHHQRRYRPNVEVAPNCPRCESPNTKFCYYNNYSLSQ
Sbjct: 1 MLSSHCESMLAYAAAAGRRAVVVDHHQRRYRPNVEVAPNCPRCESPNTKFCYYNNYSLSQ 60
Query: 61 PRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKAVRAMVGETMTARXXXXXXXXXFSHR 120
PRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKAVRAMVGETMTAR FSHR
Sbjct: 61 PRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKAVRAMVGETMTARGGGGGGAAAFSHR 120
Query: 121 FHGPVRPDMILEGMAGSTAASAGLGEQPGVAAPDEKPAAADGSTIDLALLYAKFLNHHQP 180
FHGPVRPDMILEGMAGSTAASAGLGEQPGVAAPDEKPAAADGSTIDLALLYAKFLNHHQP
Sbjct: 121 FHGPVRPDMILEGMAGSTAASAGLGEQPGVAAPDEKPAAADGSTIDLALLYAKFLNHHQP 180
Query: 181 TMAEQGGGAAVPEXXXXXXXXXXXXXXXXXXXXXXXXXXYGPGQDGLVGEPISTEEHGAA 240
TMAEQGGGAAVPE YGPGQDGLVGEPISTEEHGAA
Sbjct: 181 TMAEQGGGAAVPESVDTSSGSSSDRTTSPAAAQPAAAAAYGPGQDGLVGEPISTEEHGAA 240
Query: 241 AMARCAQALGELNFSVDQISCYTSLGLPTTDGGDLILPSTLDQHAKYEPFDSLPEDALSL 300
AMARCAQALGELNFSVDQISCYTSLGLPTTDGGDLILPSTLDQHAKYEPFDSLPEDALSL
Sbjct: 241 AMARCAQALGELNFSVDQISCYTSLGLPTTDGGDLILPSTLDQHAKYEPFDSLPEDALSL 300
Query: 301 HDIISGDDDVWCNALGCQGLEAALCRP 327
HDIISGDDDVWCNALGCQGLEAALCRP
Sbjct: 301 HDIISGDDDVWCNALGCQGLEAALCRP 327
>Os01g0865800 Similar to AOBP (Ascorbate oxidase promoter-binding protein)
Length = 320
Score = 248 bits (632), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 158/320 (49%), Positives = 182/320 (56%), Gaps = 41/320 (12%)
Query: 27 QRRYRPNVEVAPNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGG 86
RRY+ E APNCPRC+SPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGG
Sbjct: 14 DRRYKQGAEAAPNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGG 73
Query: 87 CRKNRRGKAVRAMVGETMTARXXXXXXXXXFSHRFHGPVRPDMILEGMAGSTAASAGLGE 146
CRKNRRGK+ + F HRF GPVRPDM+LEGM G+ A
Sbjct: 74 CRKNRRGKSSSSARSAADAVS---SGRDAAFGHRFPGPVRPDMVLEGMVGNPA------- 123
Query: 147 QPGVAAPDEKPAAADGSTIDLALLYAKFLNHHQPTMAEQGGGAAVPEX---XXXXXXXXX 203
PG A PD AAADGSTIDLA+LYAKFLN H PT + G GA PE
Sbjct: 124 NPGQAMPDVA-AAADGSTIDLAMLYAKFLN-HPPT--DAGLGAVTPESGGHVDEAFDTFS 179
Query: 204 XXXXXXXXXXXXXXXXYGPGQDGL--------VGEPISTEEHGAAAM----ARCAQALGE 251
+ P QDG +P ST +M A ALGE
Sbjct: 180 ASSDLSPGILAAASAQFDPNQDGFGEWSSPASGNDPTSTATTATTSMLCTDASVQAALGE 239
Query: 252 LNFSVDQISCYTSLGLPTTDGGD-------LILPS-TLDQHAKYEPFDSLPEDALSLHD- 302
LNF++DQ SC+ SLGLPT G I+PS + + KY+ DS P+DA+SLH+
Sbjct: 240 LNFAMDQ-SCFDSLGLPTDVAGAGSLSSWCSIVPSLSTWEEPKYDSLDSFPDDAMSLHEC 298
Query: 303 IISGDDDVWCNALGCQGLEA 322
+I D W ++ CQGLEA
Sbjct: 299 MIGAPDHDW--SVDCQGLEA 316
>Os02g0707200 Similar to Zn finger protein (Fragment)
Length = 281
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 56/65 (86%)
Query: 28 RRYRPNVEVAPNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGC 87
RR RP + CPRCES +TKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVPVGGGC
Sbjct: 27 RRLRPQHDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGC 86
Query: 88 RKNRR 92
RKN+R
Sbjct: 87 RKNKR 91
>Os03g0276300
Length = 403
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 32 PNVEVAPNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 91
P E A CPRC+S NTKFCYYNNYSLSQPR+FCK CRRYWT+GGSLRNVPVGGGCR+N+
Sbjct: 85 PQPEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNK 144
Query: 92 R 92
R
Sbjct: 145 R 145
>Os03g0585600
Length = 371
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 47/52 (90%), Positives = 51/52 (98%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 91
CPRC+SPNTKFCYYNNYSLSQPR+FCK CRRYWTKGG+LRNVPVGGGCRKN+
Sbjct: 50 CPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNK 101
>Os07g0508900 Zinc finger, Dof-type family protein
Length = 359
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 46/56 (82%), Positives = 52/56 (92%)
Query: 37 APNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 92
A CPRC+S NTKFCYYNNYSLSQPR+FCK C+RYWT+GG+LRNVPVGGGCRKN+R
Sbjct: 48 ALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKR 103
>Os03g0821200 Similar to Zn finger protein (Fragment)
Length = 414
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 53/61 (86%)
Query: 32 PNVEVAPNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 91
P E CPRCES NTKFCY+NNYSLSQPR+FCK CRRYWT+GG+LRNVPVGGGCR+N+
Sbjct: 112 PQPEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNK 171
Query: 92 R 92
R
Sbjct: 172 R 172
>Os02g0673700 Zinc finger, Dof-type family protein
Length = 375
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 51/60 (85%)
Query: 27 QRRYRPNVEVAPNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGG 86
+RR RP E A NCPRC S NTKFCYYNNYSL QPRYFCK CRRYWT+GGSLRNVPVGGG
Sbjct: 63 ERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGG 122
>Os07g0236700 Similar to Dof2 (Fragment)
Length = 332
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 53/62 (85%)
Query: 32 PNVEVAPNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 91
P E CPRC+S NTKFCY+NNYSL+QPR+FCK CRRYWT+GG+LRNVPVGGG R+N+
Sbjct: 47 PQPEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGFRRNK 106
Query: 92 RG 93
RG
Sbjct: 107 RG 108
>Os02g0726300 Similar to AOBP (Ascorbate oxidase promoter-binding protein)
Length = 282
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 47/56 (83%), Positives = 50/56 (89%)
Query: 37 APNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 92
A CPRCES NTKFCYYNNY+LSQPR+FCK CRRYWTKGG LRNVPVGGGCRK +R
Sbjct: 44 AVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKR 99
>Os02g0252400 Similar to Zn finger protein (Fragment)
Length = 373
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 51/56 (91%)
Query: 37 APNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 92
+P CPRC S TKFCYYNNYS++QPRYFC+ CRRYWT+GGSLRNVPVGGGCRK++R
Sbjct: 44 SPCCPRCNSIKTKFCYYNNYSMAQPRYFCRECRRYWTQGGSLRNVPVGGGCRKSKR 99
>Os03g0764900 Similar to Zn finger protein (Fragment)
Length = 359
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 43/52 (82%), Positives = 48/52 (92%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 91
CPRC S NTKFCYYNNY+L+QPR+FCK CRRYWTKGG+LRNVP+GGGCRK R
Sbjct: 81 CPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPR 132
>Os12g0569900 Similar to Zn finger protein (Fragment)
Length = 348
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 49/51 (96%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKN 90
CPRC+S NTKFCY+NNYSLSQPR+FCK CRRYWT+GG+LRNVPVGGGCR+N
Sbjct: 96 CPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRN 146
>Os06g0284500 Zinc finger, Dof-type family protein
Length = 289
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 45/48 (93%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGC 87
CPRC+S NTKFCYYNNY+LSQPR+FCK CRRYWTKGG LRNVPVGGGC
Sbjct: 32 CPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVGGGC 79
>Os08g0490100 Similar to PBF protein
Length = 276
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 46/51 (90%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKN 90
CPRCES +TKFCYYNNY+ SQPR+FCK CRRYWTKGG+LRNVPVGGG RK
Sbjct: 63 CPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKK 113
>Os05g0112200 Similar to Zn finger protein (Fragment)
Length = 290
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 32 PNVEVAPNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 91
P E CPRC+S NTKFCY+NNYSLSQPR+FC+ CRRYWT+GG+LRNVPVGGG R++
Sbjct: 34 PLPEPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHA 93
Query: 92 R 92
+
Sbjct: 94 K 94
>Os01g0193300
Length = 215
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 46/51 (90%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKN 90
CPRCES NTKFCYYNNY+L+QPR+FCK CRRYWT+GG+LRNVPVGGG R
Sbjct: 32 CPRCESTNTKFCYYNNYNLAQPRHFCKACRRYWTRGGALRNVPVGGGTRNK 82
>Os09g0475800 Similar to Zn finger protein (Fragment)
Length = 230
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/49 (85%), Positives = 45/49 (91%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCR 88
CPRCES +TKFCYYNNY+ SQPR+FCK CRRYWTKGGSLRNVPVGGG R
Sbjct: 44 CPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGSR 92
>Os01g0263900 Zinc finger, Dof-type family protein
Length = 496
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 46/52 (88%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 91
CPRC S +TKFCYYNNY+++QPR+FCK C+RYWT GG++RNVPVG G RK++
Sbjct: 107 CPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSK 158
>Os07g0685000 Similar to Dof3 gene (Fragment)
Length = 476
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 47/56 (83%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKA 95
CPRC S +TKFCYYNNY+++QPR+FCK C+RYWT GGS+RN+PVG G RK++ A
Sbjct: 110 CPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKSSTA 165
>Os03g0169600 Zinc finger, Dof-type family protein
Length = 440
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 46/52 (88%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 91
CPRC S +TKFCYYNNY+++QPR+FCK C+RYWT GG++RNVPVG G RK++
Sbjct: 108 CPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSK 159
>Os01g0758200 Similar to Dof2 (Fragment)
Length = 211
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 45/52 (86%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 91
CPRC S +TKFCY+NNY+++QPR+FCK C RYWT GG+LRNVPVG G RKNR
Sbjct: 111 CPRCRSRDTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKNR 162
>Os12g0590700
Length = 265
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 39 NCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 92
CPRC S +TKFCYYNNY+ +QPR+FC+ CRRYWT GGSLRNVP+GG RK R
Sbjct: 52 QCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 105
>Os01g0277500 Similar to Dof3 gene (Fragment)
Length = 490
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR-GKAVRA 98
CPRC S TKFCY+NNY++ QPR+FC+ C+RYWT GG++RNVPVG G R+N+ K +A
Sbjct: 116 CPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVSKYCQA 175
Query: 99 MV 100
M+
Sbjct: 176 MM 177
>Os03g0619100 Zinc finger, Dof-type family protein
Length = 202
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 41/47 (87%)
Query: 39 NCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGG 85
CPRC S +TKFCYYNNY+ SQPR+FC+ CRRYWT GGSLRNVP+GG
Sbjct: 50 QCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGG 96
>Os10g0406300 Similar to AOBP (Ascorbate oxidase promoter-binding protein)
Length = 194
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 42/47 (89%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGG 86
CPRC S +TKFCY+NNY+++QPR+FCK C+RYWT GG++RNVPVG G
Sbjct: 97 CPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAG 143
>Os10g0496000 Zinc finger, Dof-type family protein
Length = 247
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 43 CESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 92
C S NTKFCYYNNYS +QPRY CK CRR+WT+GG+LR+VPVGGG + ++R
Sbjct: 83 CGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKR 132
>Os04g0678400 Zinc finger, Dof-type family protein
Length = 207
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPV 83
CPRC S NTKFCYYNNYS SQPR+FC+ CRRYWT GG+LR+VPV
Sbjct: 52 CPRCRSTNTKFCYYNNYSTSQPRHFCRACRRYWTHGGTLRDVPV 95
>Os01g0673700
Length = 175
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 34/42 (80%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNV 81
CPRC S TKFCY+NNY++ QPR+ C+ CRRYWT GG+LR V
Sbjct: 86 CPRCGSRETKFCYFNNYNVRQPRHLCRSCRRYWTAGGALRRV 127
>AB028133
Length = 235
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 40 CPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGG 76
CPRC S +TKFCY+NNY+++QPR+FCK C RYWT GG
Sbjct: 118 CPRCRSRDTKFCYFNNYNVNQPRHFCKACHRYWTAGG 154
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,611,464
Number of extensions: 493937
Number of successful extensions: 1440
Number of sequences better than 1.0e-10: 30
Number of HSP's gapped: 1435
Number of HSP's successfully gapped: 31
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)