Os12g0569900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Zn finger protein (Fragment).
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Os12g0569900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zn finger protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.34 | 0.733 | 6.28 | -3.36 | 4 | 2.45 | 0.594 | -7.4 | -0.293 | 6.49 | 25.91 | 5916 | -- | -- |
| 264.41 | 0.757 | 6.1 | -1.72 | 3.95 | 2.03 | 1.78 | -- | -0.0878 | 6.55 | 21.2 | 5946 | -- | -- |
| 243.91 | 0.727 | 6.29 | -3.46 | 4.01 | 2.47 | -- | -7.9 | -0.284 | 6.46 | 26.3 | 5931 | -- | -- |
| 260.63 | 0.752 | 6.08 | -1.48 | 3.98 | 1.93 | -- | -- | -0.0482 | 6.55 | 22.08 | 5953 | -- | -- |
| 1040.51 | 1.5 | 6.31 | -3.3 | -- | 2.72 | -- | -8.54 | 0.0911 | -- | 27.6 | 5699 | -- | -- |
| 386.89 | 0.922 | 5.97 | -0.609 | 4 | -- | 0.606 | -- | 0.42 | 6.5 | -- | -- | -- | -- |
| 387.81 | 0.922 | 5.97 | -0.601 | 4 | -- | -- | -- | 0.419 | 6.5 | -- | -- | -- | -- |
| 1065.86 | 1.52 | 6.13 | -1.46 | -- | 1.82 | -- | -- | -0.0391 | -- | 23.49 | 7122 | -- | -- |
| 302.39 | 0.81 | 5.99 | -- | 4.02 | 1.38 | -- | -- | 0.382 | 6.54 | 26.2 | 5903 | -- | -- |
| 1219.46 | 1.63 | 6.05 | -0.501 | -- | -- | -- | -- | 0.502 | -- | -- | -- | -- | -- |
| 397.33 | 0.932 | 5.96 | -- | 3.99 | -- | -- | -- | 0.485 | 6.51 | -- | -- | -- | -- |
| 1095.51 | 1.54 | 6.1 | -- | -- | 1.54 | -- | -- | 0.28 | -- | 27.6 | 7128 | -- | -- |
| 1226.09 | 1.63 | 6.04 | -- | -- | -- | -- | -- | 0.557 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 247.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 3 | 249.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 4 | 249.18 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 9 | 249.57 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 10 | 249.85 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 17 | 251.38 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 24 | 251.86 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 25 | 251.87 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 31 | 252.31 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 32 | 252.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 33 | 252.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 39 | 252.66 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 43 | 252.86 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 56 | 253.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 64 | 254.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 75 | 254.64 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 82 | 254.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 86 | 254.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 88 | 254.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 100 | 255.05 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 103 | 255.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 106 | 255.20 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 110 | 255.28 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 118 | 255.43 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 137 | 255.70 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 191 | 256.53 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 214 | 256.86 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 221 | 256.97 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 225 | 257.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 256 | 257.31 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 263 | 257.33 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 273 | 257.44 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 282 | 257.66 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 284 | 257.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 285 | 257.70 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 289 | 257.74 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 294 | 257.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 295 | 257.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 297 | 257.78 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 340 | 258.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 424 | 258.68 | temperature | 30 | 14400 | < th | dose independent | sin | 15 | NA |
| 452 | 258.92 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 471 | 259.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 491 | 259.20 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 543 | 259.34 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 554 | 259.41 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 593 | 259.64 | temperature | 30 | 14400 | > th | dose independent | sin | 15 | NA |
| 665 | 259.96 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 667 | 259.97 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 747 | 260.32 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 762 | 260.35 | temperature | 20 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 789 | 260.44 | humidity | 90 | 43200 | > th | dose dependent | sin | 14 | NA |
| 795 | 260.50 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 831 | 260.69 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 841 | 260.74 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 842 | 260.74 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 853 | 260.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 855 | 260.80 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 856 | 260.80 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 873 | 260.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 895 | 260.91 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 896 | 260.91 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 943 | 261.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 947 | 261.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 963 | 261.23 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 968 | 261.24 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 20 |
| 984 | 261.28 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |