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Os03g0169600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, Dof-type family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0305) R2 : 0.935
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -5.64 (0.07) R2dE : 0.926 R2E : 0.918
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.619 (0.0643) R2dN8 : 0.0168 R2N8 : 0.00861
σ : 0.574
deviance : 151.86
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_____
C
peak time of C : --
E
wheather : temperature
threshold : -8.296
memory length : 117
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.6
open length of G : 8.83

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.66 0.581 12.2 0.694 1.12 -5.04 -1.15 -0.659 0.705 11.2 5.391 89 19.1 8.65
151.64 0.574 12.2 0.579 1.17 -4.94 -0.619 -- 0.677 11.1 4.162 92 19 8.65
144.2 0.559 12.2 0.591 0.904 -5.14 -- 0.476 0.706 11.8 2.57 110 18.8 8.7
142.69 0.556 12.2 0.607 0.619 -5.37 -- -- 0.704 11.7 1.018 107 18.8 8.76
144.59 0.56 12.2 0.512 -- -5.9 -- 0.611 0.792 -- -2.955 124 18.6 8.72
552.56 1.1 12.1 0.582 5.28 -- -0.348 -- 0.626 11.8 -- -- -- --
553.08 1.1 12.1 0.568 5.28 -- -- -- 0.624 11.8 -- -- -- --
143.45 0.558 12.2 0.573 -- -5.73 -- -- 0.716 -- -6.25 125 18.6 8.8
151.21 0.573 12.2 -- 0.733 -5.14 -- -- 0.661 11.4 -2.036 109 18.8 8.73
2310.27 2.25 12.3 0.412 -- -- -- -- 0.557 -- -- -- -- --
561.59 1.11 12.2 -- 5.28 -- -- -- 0.561 11.8 -- -- -- --
151.86 0.574 12.3 -- -- -5.64 -- -- 0.619 -- -8.296 117 18.6 8.83
2314.74 2.25 12.3 -- -- -- -- -- 0.511 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.08 temperature 10.0 90 > th dose dependent rect. 19 9
3 208.49 radiation 1.0 90 < th dose dependent rect. 19 9
4 208.51 temperature 15.0 90 > th dose independent rect. 19 9
7 208.52 temperature 30.0 90 < th dose independent rect. 19 9
8 208.52 humidity 50.0 90 > th dose independent rect. 19 9
10 208.52 atmosphere 995.0 90 > th dose independent rect. 19 9
11 208.52 radiation 1.0 90 < th dose independent rect. 19 9
16 208.52 temperature 10.0 90 > th dose independent rect. 4 15
17 208.52 atmosphere 1015.0 90 < th dose independent rect. 4 15
21 208.96 wind 9.0 90 < th dose independent rect. 19 9
22 210.46 wind 9.0 90 < th dose independent rect. 4 15
24 210.69 precipitation 0.1 90 < th dose independent rect. 4 15
25 210.69 precipitation 0.1 90 < th dose dependent rect. 4 15
26 214.50 precipitation 0.1 90 < th dose independent rect. 19 9
27 214.50 precipitation 0.1 90 < th dose dependent rect. 19 9
30 221.28 radiation 20.0 270 < th dose dependent rect. 17 9
32 221.97 radiation 10.0 270 < th dose independent rect. 17 9
33 221.98 humidity 50.0 270 > th dose independent rect. 17 9
34 222.04 temperature 10.0 270 > th dose independent rect. 6 7
35 222.04 atmosphere 995.0 270 > th dose independent rect. 6 7
36 222.04 atmosphere 1015.0 270 < th dose independent rect. 6 7
37 222.04 temperature 10.0 270 > th dose independent rect. 13 17
38 222.34 precipitation 0.1 270 < th dose independent rect. 6 7
39 222.34 precipitation 0.1 270 < th dose dependent rect. 6 7
41 223.06 wind 9.0 270 < th dose independent rect. 13 17
43 224.60 wind 9.0 270 < th dose independent rect. 6 7
45 226.47 temperature 10.0 270 > th dose independent rect. 17 9
49 226.47 temperature 10.0 270 > th dose independent rect. 2 15
50 226.47 atmosphere 1015.0 270 < th dose independent rect. 2 15
51 227.34 wind 9.0 270 < th dose independent rect. 17 9
52 227.93 wind 9.0 270 < th dose independent rect. 2 15
53 228.32 precipitation 0.1 270 < th dose independent rect. 2 15
54 228.32 precipitation 0.1 270 < th dose dependent rect. 2 15
55 229.88 precipitation 0.1 270 < th dose independent rect. 17 9
56 229.88 precipitation 0.1 270 < th dose dependent rect. 17 9
57 229.99 precipitation 0.1 270 < th dose independent rect. 13 17
58 229.99 precipitation 0.1 270 < th dose dependent rect. 13 17
59 230.07 humidity 50.0 270 > th dose independent rect. 6 7
60 230.12 atmosphere 995.0 270 > th dose independent rect. 13 17
70 234.74 atmosphere 995.0 90 > th dose independent rect. 4 15
78 237.87 atmosphere 995.0 270 > th dose independent rect. 2 15
96 240.57 radiation 1.0 270 > th dose independent rect. 6 7
109 243.55 atmosphere 1015.0 90 < th dose independent rect. 19 9
114 246.24 wind 1.0 270 > th dose independent rect. 6 7
131 254.04 radiation 40.0 270 < th dose independent rect. 13 17
135 254.96 radiation 30.0 30 < th dose dependent rect. 4 15
198 259.95 radiation 30.0 270 < th dose dependent rect. 1 6
199 260.02 temperature 10.0 1440 > th dose independent rect. 20 9
202 260.02 temperature 30.0 1440 < th dose independent rect. 20 9
206 260.02 humidity 50.0 1440 > th dose independent rect. 20 9
212 260.02 atmosphere 995.0 1440 > th dose independent rect. 20 9
213 260.02 radiation 20.0 1440 < th dose independent rect. 20 9
225 260.02 temperature 10.0 1440 > th dose independent rect. 5 15
237 261.59 wind 7.0 270 < th dose independent rect. 2 4
258 262.17 temperature 10.0 270 > th dose independent rect. 2 4
260 262.17 temperature 30.0 270 < th dose independent rect. 2 4
261 262.17 humidity 50.0 270 > th dose independent rect. 2 4
264 262.17 atmosphere 995.0 270 > th dose independent rect. 2 4
265 262.17 atmosphere 1015.0 270 < th dose independent rect. 2 4
266 262.17 radiation 20.0 270 < th dose independent rect. 2 4
269 262.17 temperature 10.0 270 > th dose independent rect. 6 20
272 262.22 radiation 40.0 270 < th dose dependent rect. 2 4
282 263.33 precipitation 0.1 270 < th dose independent rect. 2 4
283 263.33 precipitation 0.1 270 < th dose dependent rect. 2 4
368 267.35 wind 9.0 270 < th dose independent rect. 6 20
380 268.80 precipitation 0.1 270 < th dose independent rect. 6 19
381 268.80 precipitation 0.1 270 < th dose dependent rect. 6 19
392 269.47 atmosphere 1015.0 270 < th dose independent rect. 6 19
395 269.56 wind 9.0 270 < th dose dependent rect. 2 4
396 269.58 humidity 50.0 270 > th dose dependent rect. 2 4
433 272.31 radiation 20.0 30 < th dose independent rect. 4 15
450 273.80 humidity 50.0 270 > th dose independent rect. 6 19
459 274.80 humidity 50.0 90 > th dose dependent rect. 19 9
507 278.02 wind 1.0 270 > th dose independent rect. 18 8
515 278.64 wind 9.0 270 < th dose dependent rect. 1 6
551 280.67 wind 9.0 270 < th dose independent rect. 3 2
552 280.67 temperature 10.0 270 > th dose independent rect. 3 2
554 280.67 temperature 30.0 270 < th dose independent rect. 3 2
555 280.67 humidity 50.0 270 > th dose independent rect. 3 2
558 280.67 atmosphere 995.0 270 > th dose independent rect. 3 2
559 280.67 atmosphere 1010.0 270 < th dose independent rect. 3 2
561 280.67 radiation 20.0 270 < th dose independent rect. 3 2
564 280.67 temperature 10.0 270 > th dose independent rect. 5 22
570 280.74 radiation 40.0 270 < th dose dependent rect. 3 2
573 280.83 radiation 1.0 270 < th dose independent rect. 3 2
582 281.82 radiation 1.0 270 < th dose independent rect. 9 17
588 282.15 radiation 20.0 90 < th dose dependent rect. 4 5
628 283.83 wind 1.0 270 > th dose independent rect. 13 17
634 284.01 wind 9.0 90 < th dose dependent rect. 19 9
638 284.12 precipitation 0.1 270 < th dose independent rect. 3 2
639 284.12 precipitation 0.1 270 < th dose dependent rect. 3 2
660 285.15 radiation 1.0 90 < th dose dependent rect. 10 18
667 285.52 radiation 1.0 10 < th dose dependent sin 12 NA
679 285.91 humidity 50.0 270 > th dose dependent rect. 3 2
704 288.09 radiation 1.0 90 < th dose dependent sin 13 NA
706 288.11 radiation 1.0 270 < th dose dependent rect. 6 20
709 288.31 wind 9.0 270 < th dose dependent rect. 3 2
710 288.37 radiation 40.0 90 < th dose independent rect. 4 15
750 289.94 temperature 10.0 270 > th dose dependent rect. 2 4
756 290.34 temperature 10.0 270 > th dose independent rect. 13 5
758 290.34 atmosphere 1010.0 270 < th dose independent rect. 13 5
760 290.34 temperature 10.0 270 > th dose independent rect. 18 19
768 290.70 precipitation 0.1 270 < th dose independent rect. 18 19
769 290.70 precipitation 0.1 270 < th dose dependent rect. 18 19
770 290.78 wind 9.0 270 < th dose independent rect. 13 5
771 290.81 precipitation 0.1 270 < th dose independent rect. 13 5
772 290.81 precipitation 0.1 270 < th dose dependent rect. 13 5
782 291.16 wind 9.0 270 < th dose independent rect. 5 22
808 291.61 wind 1.0 270 > th dose independent rect. 13 5
830 292.50 wind 9.0 270 < th dose independent rect. 18 19
847 293.72 atmosphere 995.0 270 > th dose independent rect. 18 19
855 294.25 atmosphere 995.0 270 > th dose independent rect. 13 5
865 294.97 precipitation 0.1 270 < th dose independent rect. 12 7
866 294.97 precipitation 0.1 270 < th dose dependent rect. 12 7
882 295.32 humidity 50.0 270 > th dose independent rect. 18 19
890 295.43 atmosphere 995.0 270 > th dose independent rect. 19 17
894 295.53 atmosphere 995.0 270 > th dose independent rect. 6 19
899 295.66 radiation 40.0 10 < th dose dependent rect. 14 18
906 295.93 radiation 1.0 270 < th dose independent rect. 2 11
912 296.22 precipitation 0.1 270 < th dose independent rect. 5 22
914 296.22 precipitation 0.1 270 < th dose dependent rect. 5 22
998 298.98 atmosphere 1015.0 270 < th dose independent rect. 19 17