FiT-DB / Search/ Help/ Sample detail

Os05g0112200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zn finger protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.09 (0.0206) R2 : 0.642
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.33 (0.0518) R2dC : 0.52 R2C : 0.481
β3 : -0.762 (0.0548) R2dE : 0.188 R2E : 0.0737
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.255 (0.0471) R2dN8 : 0.0368 R2N8 : -0.03
σ : 0.378
deviance : 65.79
__
_____
C
peak time of C : 4.3
E
wheather : temperature
threshold : 28.36
memory length : 8759
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.25 0.349 9.04 1.01 1.28 -1.27 0.311 1.9 0.316 4.21 26 4625 -- --
57.7 0.354 9.04 0.689 1.37 -1.1 0.358 -- 0.439 4.24 23 6879 -- --
54.83 0.345 9.05 1 1.27 -1.28 -- 1.96 0.277 4.23 26.44 4653 -- --
56.74 0.351 9.03 0.738 1.32 -1.14 -- -- 0.515 4.21 23.2 10832 -- --
114.58 0.501 9.11 0.294 -- -0.841 -- -0.0769 0.225 -- 26.44 4653 -- --
93.26 0.453 9.15 0.0522 1.29 -- 0.322 -- -0.0251 4.34 -- -- -- --
93.55 0.453 9.15 0.0493 1.29 -- -- -- -0.0268 4.34 -- -- -- --
112.37 0.496 9.13 0.313 -- -0.891 -- -- 0.152 -- 27.2 4790 -- --
65.79 0.378 9.09 -- 1.33 -0.762 -- -- 0.255 4.3 28.36 8759 -- --
183.24 0.633 9.16 0.1 -- -- -- -- 0.00741 -- -- -- -- --
93.61 0.453 9.15 -- 1.29 -- -- -- -0.0323 4.34 -- -- -- --
114.92 0.501 9.13 -- -- -0.87 -- -- 0.114 -- 27.2 4790 -- --
183.5 0.632 9.16 -- -- -- -- -- -0.00374 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.02 humidity 90 43200 < th dose independent rect. 17 5
4 54.32 humidity 90 43200 < th dose independent rect. 18 1
10 54.51 humidity 90 43200 < th dose independent rect. 21 1
13 54.56 humidity 90 43200 > th dose independent rect. 17 6
15 54.57 humidity 90 43200 > th dose independent rect. 18 4
21 54.62 humidity 80 43200 > th dose dependent rect. 17 6
34 54.79 humidity 90 43200 > th dose independent rect. 9 1
46 54.98 humidity 80 43200 > th dose dependent rect. 17 2
48 55.04 temperature 20 4320 > th dose dependent rect. 7 5
52 55.08 temperature 20 4320 > th dose dependent rect. 7 3
53 55.08 temperature 20 4320 > th dose dependent rect. 6 8
56 55.11 humidity 90 43200 > th dose dependent rect. 21 1
61 55.14 humidity 90 43200 < th dose independent sin 18 NA
71 55.20 humidity 90 43200 < th dose independent rect. 7 19
76 55.24 humidity 80 43200 > th dose dependent rect. 10 1
84 55.26 temperature 25 4320 > th dose dependent rect. 11 1
88 55.27 humidity 90 43200 > th dose independent rect. 7 19
98 55.29 humidity 90 43200 < th dose independent rect. 9 16
122 55.36 humidity 80 43200 > th dose dependent rect. 9 15
123 55.37 humidity 90 43200 < th dose independent rect. 9 2
126 55.37 humidity 90 43200 > th dose independent rect. 9 16
135 55.40 humidity 90 43200 > th dose independent sin 18 NA
140 55.42 radiation 1 14400 > th dose independent rect. 17 2
158 55.44 humidity 80 43200 > th dose dependent sin 19 NA
161 55.45 humidity 90 43200 > th dose independent rect. 11 14
200 55.55 temperature 20 4320 > th dose dependent sin 3 NA
207 55.56 temperature 25 4320 > th dose dependent rect. 11 3
236 55.61 humidity 80 43200 > th dose independent rect. 12 1
262 55.67 temperature 20 14400 > th dose dependent rect. 17 1
312 55.78 humidity 80 43200 < th dose independent rect. 12 1
329 55.81 temperature 20 4320 > th dose dependent rect. 6 15
334 55.82 temperature 20 14400 > th dose dependent rect. 17 4
393 55.91 radiation 1 14400 < th dose independent rect. 17 3
394 55.91 radiation 1 14400 < th dose independent rect. 17 5
395 55.91 radiation 1 14400 < th dose independent rect. 17 7
492 56.00 humidity 90 43200 > th dose independent rect. 15 23
501 56.01 humidity 90 43200 < th dose independent rect. 15 23
521 56.04 humidity 90 43200 > th dose independent no NA NA
540 56.06 humidity 90 43200 < th dose independent no NA NA
566 56.08 humidity 90 43200 > th dose independent rect. 11 23
586 56.10 humidity 80 43200 > th dose independent rect. 10 5
595 56.11 humidity 80 43200 > th dose independent rect. 10 8
607 56.12 humidity 90 43200 > th dose independent rect. 19 23
649 56.16 temperature 20 14400 > th dose dependent rect. 20 1
668 56.18 humidity 90 43200 < th dose independent rect. 11 23
678 56.19 humidity 90 43200 > th dose independent rect. 9 23
686 56.20 temperature 20 4320 > th dose dependent no NA NA
703 56.22 temperature 25 14400 < th dose independent rect. 17 2
708 56.22 humidity 90 43200 < th dose independent rect. 21 23
742 56.26 humidity 90 43200 < th dose independent rect. 9 23
751 56.27 humidity 90 43200 < th dose independent rect. 19 23
757 56.27 temperature 20 4320 > th dose dependent rect. 13 23
786 56.30 temperature 20 4320 > th dose dependent rect. 11 23
791 56.31 temperature 20 14400 > th dose dependent sin 17 NA
818 56.34 humidity 80 43200 < th dose independent rect. 10 5
839 56.37 humidity 80 43200 < th dose independent rect. 10 7
867 56.40 humidity 80 43200 < th dose independent rect. 12 5
895 56.42 radiation 1 14400 < th dose independent rect. 7 15
896 56.42 radiation 1 14400 < th dose independent rect. 7 17
899 56.42 radiation 1 14400 < th dose dependent rect. 17 1
905 56.43 radiation 1 14400 < th dose independent rect. 7 13
937 56.45 temperature 25 14400 > th dose independent rect. 17 1
977 56.48 humidity 80 43200 > th dose independent rect. 12 3