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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0252400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zn finger protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0349) R2 : 0.149
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.1 (0.468) R2dE : 0.143 R2E : 0.144
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.105 (0.0735) R2dN8 : 0.00495 R2N8 : 0.00551
σ : 0.658
deviance : 198.26
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 72.49
memory length : 3
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.38
open length of G : 1.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.52 0.634 3.1 0.184 0.323 14.5 -0.285 27.2 -0.0928 10.9 70 10 7 1
217.46 0.692 3.08 0.133 0.357 2.29 -0.209 -- -0.106 10.6 70 10 7 1
185.87 0.635 3.1 0.178 0.323 14.4 -- 27 -0.0917 11 69.99 10 7 1.02
191.3 0.644 3.08 0.135 0.324 4.02 -- -- -0.0898 10.9 72.56 2 7.25 0.727
192.37 0.646 3.11 0.168 -- 14.7 -- 27.5 -0.0952 -- 69.95 9 6.97 1.06
222.6 0.699 3.08 0.0953 0.372 -- -0.298 -- -0.118 10.4 -- -- -- --
222.96 0.699 3.08 0.0835 0.373 -- -- -- -0.118 10.4 -- -- -- --
197.82 0.658 3.09 0.129 -- 4.12 -- -- -0.0909 -- 72.49 3 7.38 1.05
191.78 0.649 3.08 -- 0.323 3.99 -- -- -0.104 10.9 72.4 3 7.54 0.998
231.48 0.711 3.09 0.0773 -- -- -- -- -0.12 -- -- -- -- --
223.14 0.699 3.09 -- 0.373 -- -- -- -0.128 10.4 -- -- -- --
198.26 0.658 3.09 -- -- 4.1 -- -- -0.105 -- 72.49 3 7.38 1.05
231.64 0.71 3.1 -- -- -- -- -- -0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.52 humidity 70 10 < th dose independent rect. 7 1
61 185.52 humidity 70 10 < th dose dependent rect. 7 1
121 190.55 wind 1 10 < th dose dependent rect. 7 1
122 190.59 wind 1 10 < th dose independent rect. 7 1
123 190.60 atmosphere 1000 10 < th dose independent rect. 7 1
130 190.60 atmosphere 1000 10 < th dose dependent rect. 7 1
149 199.76 atmosphere 1000 90 < th dose independent rect. 6 8
158 200.84 radiation 30 30 > th dose independent rect. 7 1
194 201.26 atmosphere 1000 90 < th dose dependent rect. 8 6
221 201.97 atmosphere 1000 10 < th dose independent rect. 12 2
223 201.98 atmosphere 1000 10 < th dose dependent rect. 9 6
249 202.40 atmosphere 1000 90 < th dose independent rect. 24 14
250 202.41 atmosphere 1000 10 < th dose independent rect. 24 15
262 202.73 atmosphere 1000 10 < th dose dependent rect. 12 2
296 203.25 atmosphere 1000 10 < th dose dependent rect. 14 1
312 203.39 wind 1 10 < th dose independent rect. 13 1
314 203.39 wind 1 10 < th dose dependent rect. 13 1
350 204.31 atmosphere 1000 90 < th dose dependent rect. 24 14
351 204.33 atmosphere 1000 10 < th dose dependent rect. 24 15
364 204.60 radiation 20 30 > th dose dependent rect. 7 1
390 204.99 atmosphere 1000 720 < th dose independent rect. 2 1
404 205.30 atmosphere 1000 90 < th dose independent sin 3 NA
413 205.40 atmosphere 1000 90 > th dose independent sin 3 NA
430 205.55 atmosphere 1000 10 > th dose independent sin 2 NA
448 205.71 radiation 40 10 > th dose dependent rect. 14 1
596 206.38 atmosphere 1000 90 < th dose dependent rect. 17 21
604 206.45 atmosphere 1000 90 < th dose dependent rect. 21 17
606 206.45 atmosphere 1000 10 < th dose dependent rect. 17 22
613 206.49 atmosphere 1000 10 < th dose dependent rect. 19 20
629 206.55 atmosphere 1000 90 < th dose independent rect. 6 5
755 207.09 atmosphere 1000 270 < th dose dependent rect. 4 1
867 207.62 atmosphere 1000 10 < th dose independent rect. 9 11
928 207.81 atmosphere 1000 720 < th dose independent rect. 22 10
955 207.91 atmosphere 1000 10 < th dose dependent sin 1 NA
956 207.92 atmosphere 1000 30 < th dose independent rect. 7 20
978 207.96 atmosphere 1000 270 < th dose dependent rect. 9 2