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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0263900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, Dof-type family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.99 (0.0328) R2 : 0.814
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.11 (0.114) R2dE : 0.811 R2E : 0.811
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.162 (0.0691) R2dN8 : 0.00279 R2N8 : 0.00337
σ : 0.616
deviance : 175.18
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 34.65
memory length : 264
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.6
open length of G : 3.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.07 0.593 3.97 0.382 0.392 4.94 -0.0216 2.39 -0.0972 3.44 32.72 257 0.737 3.78
164.36 0.597 3.97 0.36 0.418 4.9 1.28 -- -0.0908 4.36 32.98 251 0.717 3.86
159.05 0.587 3.97 0.383 0.384 4.93 -- 2.37 -0.0982 3.4 32.82 256 0.733 3.8
168.63 0.605 3.98 0.325 0.383 4.82 -- -- -0.111 3.35 33.64 242 0.745 3.98
163.16 0.595 3.97 0.384 -- 5.2 -- 2.32 -0.0948 -- 33.42 257 0.685 3.87
452.9 0.998 3.96 0.388 2.98 -- 1.73 -- -0.217 4.76 -- -- -- --
460.72 1.01 3.96 0.38 2.99 -- -- -- -0.226 4.74 -- -- -- --
172.38 0.611 3.98 0.324 -- 5.12 -- -- -0.122 -- 34.28 261 0.619 3.87
171.45 0.61 3.98 -- 0.384 4.79 -- -- -0.151 3.29 33.85 237 0.75 4.07
933.1 1.43 3.99 0.493 -- -- -- -- -0.148 -- -- -- -- --
464.52 1.01 3.97 -- 2.99 -- -- -- -0.268 4.74 -- -- -- --
175.18 0.616 3.99 -- -- 5.11 -- -- -0.162 -- 34.65 264 0.6 3.88
939.51 1.43 4 -- -- -- -- -- -0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 174.28 temperature 30.0 270 < th dose dependent rect. 1 3
2 175.92 temperature 30.0 270 < th dose dependent rect. 24 5
8 187.77 wind 1.0 270 > th dose independent rect. 24 5
9 194.74 wind 1.0 270 > th dose independent rect. 1 3
10 197.79 wind 7.0 270 < th dose independent rect. 1 3
12 198.79 temperature 10.0 270 > th dose independent rect. 1 3
14 198.79 temperature 30.0 270 < th dose independent rect. 1 3
15 198.79 humidity 50.0 270 > th dose independent rect. 1 3
18 198.79 atmosphere 995.0 270 > th dose independent rect. 1 3
19 198.79 atmosphere 1010.0 270 < th dose independent rect. 1 3
21 198.79 radiation 1.0 270 < th dose independent rect. 1 3
26 198.79 temperature 10.0 270 > th dose independent rect. 4 21
27 198.79 radiation 1.0 270 < th dose dependent rect. 1 3
32 200.77 radiation 1.0 270 < th dose dependent rect. 24 6
33 201.06 temperature 15.0 270 > th dose independent rect. 5 19
37 202.12 precipitation 0.1 270 < th dose independent rect. 4 21
38 202.12 precipitation 0.1 270 < th dose dependent rect. 4 21
39 202.15 wind 9.0 270 < th dose independent rect. 4 21
44 202.82 wind 7.0 270 < th dose independent rect. 24 5
50 202.96 temperature 10.0 270 > th dose independent rect. 24 5
51 202.96 temperature 30.0 270 < th dose independent rect. 24 5
52 202.96 humidity 50.0 270 > th dose independent rect. 24 5
55 202.96 atmosphere 995.0 270 > th dose independent rect. 24 5
56 202.96 radiation 20.0 270 < th dose independent rect. 24 5
60 203.01 radiation 1.0 270 < th dose independent rect. 24 5
63 203.06 radiation 1.0 270 < th dose dependent rect. 24 14
65 203.10 atmosphere 1015.0 270 < th dose independent rect. 24 5
68 203.31 precipitation 0.1 270 < th dose independent rect. 1 3
69 203.31 precipitation 0.1 270 < th dose dependent rect. 1 3
75 204.40 atmosphere 995.0 270 > th dose dependent rect. 1 3
77 205.38 wind 9.0 270 < th dose independent rect. 5 19
78 205.39 precipitation 0.1 270 < th dose independent rect. 5 19
79 205.39 precipitation 0.1 270 < th dose dependent rect. 5 19
85 207.51 atmosphere 1015.0 270 < th dose independent rect. 5 19
86 207.63 precipitation 0.1 270 < th dose independent rect. 24 5
87 207.63 precipitation 0.1 270 < th dose dependent rect. 24 5
109 212.26 radiation 1.0 270 < th dose independent rect. 24 14
115 213.06 atmosphere 995.0 270 > th dose dependent rect. 24 5
122 214.02 radiation 1.0 270 < th dose dependent sin 7 NA
197 218.13 atmosphere 995.0 270 > th dose independent rect. 5 19
219 218.65 humidity 50.0 270 > th dose dependent rect. 1 3
286 221.50 atmosphere 1015.0 270 < th dose independent rect. 4 21
287 221.53 wind 9.0 270 < th dose dependent rect. 1 3
297 222.44 radiation 1.0 90 < th dose dependent sin 3 NA
298 222.55 atmosphere 995.0 270 > th dose independent rect. 4 21
321 225.35 radiation 1.0 90 < th dose independent sin 3 NA
324 225.41 humidity 50.0 270 > th dose dependent rect. 24 5
325 225.47 radiation 1.0 90 > th dose independent sin 3 NA
398 229.99 radiation 1.0 270 > th dose independent sin 7 NA
399 230.00 radiation 1.0 270 < th dose independent sin 7 NA
401 230.01 radiation 20.0 10 < th dose dependent rect. 2 6
472 233.68 wind 9.0 270 < th dose dependent rect. 24 5
508 235.47 temperature 15.0 10 > th dose independent rect. 6 21
516 235.66 atmosphere 995.0 10 > th dose dependent rect. 3 3
630 238.65 precipitation 0.1 270 < th dose independent rect. 19 14
631 238.65 precipitation 0.1 270 < th dose dependent rect. 19 14
651 239.62 wind 7.0 10 < th dose independent rect. 3 3
656 239.86 precipitation 0.1 10 < th dose independent rect. 6 21
657 239.86 precipitation 0.1 10 < th dose dependent rect. 6 21
666 240.28 temperature 10.0 10 > th dose independent rect. 3 3
668 240.28 temperature 30.0 10 < th dose independent rect. 3 3
669 240.28 humidity 50.0 10 > th dose independent rect. 3 3
672 240.28 atmosphere 995.0 10 > th dose independent rect. 3 3
673 240.28 atmosphere 1010.0 10 < th dose independent rect. 3 3
675 240.28 radiation 20.0 10 < th dose independent rect. 3 3
715 241.33 wind 9.0 10 < th dose independent rect. 6 21
720 241.41 temperature 15.0 270 > th dose independent rect. 19 15
740 242.23 temperature 15.0 270 > th dose independent rect. 17 7
741 242.35 temperature 10.0 270 > th dose independent rect. 9 10
742 242.35 atmosphere 1015.0 270 < th dose independent rect. 9 10
744 242.35 humidity 50.0 270 > th dose independent rect. 19 14
745 242.35 atmosphere 995.0 270 > th dose independent rect. 19 14
753 242.68 temperature 10.0 270 > th dose dependent rect. 18 6
754 242.71 temperature 10.0 270 > th dose dependent rect. 19 14
756 242.78 humidity 50.0 270 > th dose independent rect. 5 19
760 242.94 wind 9.0 270 < th dose independent rect. 19 14
768 243.43 atmosphere 1010.0 10 < th dose independent rect. 2 5
807 244.43 precipitation 0.1 270 < th dose independent rect. 5 6
808 244.43 precipitation 0.1 270 < th dose dependent rect. 5 6
834 244.89 wind 9.0 270 < th dose independent rect. 5 6
835 244.90 temperature 10.0 270 > th dose independent rect. 5 6
836 244.90 atmosphere 995.0 270 > th dose independent rect. 5 6
837 244.90 atmosphere 1015.0 270 < th dose independent rect. 5 6
838 244.90 temperature 10.0 270 > th dose independent rect. 11 18
846 245.09 radiation 40.0 270 < th dose dependent rect. 15 9
861 245.39 temperature 30.0 270 < th dose independent rect. 19 14
869 245.58 wind 9.0 270 < th dose independent rect. 10 9
871 245.60 atmosphere 995.0 10 > th dose independent rect. 6 21
874 245.65 precipitation 0.1 270 < th dose independent rect. 10 9
875 245.65 precipitation 0.1 270 < th dose dependent rect. 10 9
879 245.75 wind 9.0 270 < th dose independent rect. 11 18
883 245.91 atmosphere 1015.0 10 < th dose independent rect. 6 21
886 246.04 precipitation 0.1 270 < th dose independent rect. 17 7
888 246.04 precipitation 0.1 270 < th dose dependent rect. 17 7
892 246.23 humidity 50.0 270 > th dose independent rect. 5 6
908 246.91 radiation 20.0 270 < th dose independent rect. 17 7
911 246.91 temperature 10.0 270 > th dose independent rect. 24 17
928 247.03 atmosphere 1015.0 270 < th dose independent rect. 24 17
935 247.51 wind 9.0 270 < th dose independent rect. 17 7
943 247.83 wind 9.0 270 < th dose independent rect. 24 17
999 248.53 atmosphere 995.0 270 > th dose independent rect. 17 7