FiT-DB / Search/ Help/ Sample detail

Os08g0490100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PBF protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0264) R2 : 0.818
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.13 (0.0691) R2dC : 0.821 R2C : 0.816
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.109 (0.0556) R2dN8 : 0.00197 R2N8 : -0.00288
σ : 0.499
deviance : 113.6
__
_____
C
peak time of C : 5.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.54 0.476 12.5 0.182 3.27 0.493 0.386 0.387 -0.0759 4.83 10.13 10 -- --
103.37 0.474 12.5 0.197 3.27 0.489 0.247 -- -0.0757 4.84 10.07 10 -- --
102.9 0.472 12.5 0.182 3.27 0.487 -- 0.321 -0.0778 4.83 10.08 10 -- --
103.5 0.474 12.5 0.195 3.26 0.493 -- -- -0.0782 4.83 10.17 10 -- --
616.81 1.16 12.6 0.368 -- -0.215 -- 0.226 -0.00675 -- 10.08 10 -- --
111.69 0.495 12.5 0.243 3.13 -- 0.367 -- -0.0798 5.41 -- -- -- --
112.03 0.496 12.5 0.244 3.13 -- -- -- -0.0815 5.4 -- -- -- --
233.8 0.712 12.6 2.19 -- -2.69 -- -- 0.268 -- 0.6 615 -- --
104.47 0.476 12.5 -- 3.28 0.511 -- -- -0.0991 4.81 10.08 10 -- --
621.74 1.17 12.6 0.35 -- -- -- -- -0.00435 -- -- -- -- --
113.6 0.499 12.5 -- 3.13 -- -- -- -0.109 5.4 -- -- -- --
128.28 0.528 12.6 -- -- -3.54 -- -- 0.0412 -- 1.56 667 -- --
624.97 1.17 12.6 -- -- -- -- -- -0.0432 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.07 atmosphere 1000.0 270 > th dose dependent rect. 13 3
4 93.44 atmosphere 1000.0 270 > th dose dependent rect. 12 5
8 94.12 atmosphere 1005.0 90 > th dose independent rect. 14 4
10 94.23 atmosphere 1000.0 270 > th dose dependent rect. 14 1
11 94.26 atmosphere 1005.0 90 > th dose independent rect. 16 1
12 94.26 radiation 10.0 10 < th dose dependent rect. 16 1
14 94.50 wind 3.0 270 > th dose independent rect. 12 5
19 94.74 temperature 30.0 10 < th dose dependent rect. 16 1
23 94.87 temperature 30.0 90 < th dose independent rect. 15 2
26 94.91 humidity 60.0 270 > th dose independent rect. 13 2
28 94.94 wind 7.0 10 > th dose dependent rect. 16 1
29 94.97 atmosphere 1000.0 10 > th dose dependent rect. 14 5
33 95.09 humidity 60.0 90 > th dose independent rect. 15 2
35 95.20 humidity 60.0 10 > th dose dependent rect. 16 1
36 95.27 humidity 60.0 270 > th dose independent rect. 12 5
43 95.60 radiation 10.0 10 < th dose independent rect. 12 7
44 95.60 radiation 10.0 10 < th dose independent rect. 10 9
46 95.62 atmosphere 1005.0 270 > th dose independent rect. 12 5
50 95.66 atmosphere 1005.0 10 > th dose independent rect. 16 2
52 95.73 radiation 10.0 10 < th dose independent rect. 8 11
55 95.77 radiation 20.0 10 < th dose dependent rect. 7 11
58 95.86 wind 1.0 270 > th dose dependent rect. 13 3
63 96.07 temperature 30.0 10 < th dose independent rect. 16 1
64 96.08 temperature 30.0 90 < th dose independent rect. 13 4
68 96.19 radiation 10.0 10 < th dose independent rect. 16 1
70 96.20 humidity 50.0 10 > th dose independent rect. 14 5
73 96.24 wind 7.0 10 > th dose independent rect. 16 1
75 96.25 humidity 70.0 10 > th dose independent rect. 16 1
79 96.27 wind 9.0 720 < th dose independent rect. 20 15
96 96.47 wind 1.0 270 > th dose dependent rect. 12 5
103 96.58 radiation 20.0 10 < th dose dependent rect. 23 20
106 96.62 temperature 15.0 720 > th dose independent rect. 5 12
109 96.64 temperature 30.0 10 < th dose independent rect. 14 5
110 96.68 wind 9.0 720 < th dose independent rect. 5 12
115 96.75 radiation 10.0 10 < th dose independent rect. 14 3
122 96.82 precipitation 0.1 720 < th dose independent rect. 23 9
123 96.82 precipitation 0.1 720 < th dose dependent rect. 23 9
124 96.84 temperature 15.0 720 > th dose independent rect. 5 3
129 96.87 radiation 40.0 720 < th dose independent rect. 23 9
138 96.94 radiation 30.0 90 < th dose independent rect. 13 5
141 96.97 precipitation 0.1 270 < th dose independent rect. 13 13
143 96.97 precipitation 0.1 270 < th dose dependent rect. 13 13
148 96.99 radiation 40.0 10 < th dose dependent rect. 13 6
156 97.07 wind 9.0 720 < th dose independent rect. 23 9
157 97.07 temperature 10.0 720 > th dose independent rect. 23 9
158 97.07 temperature 30.0 720 < th dose independent rect. 23 9
159 97.07 humidity 50.0 720 > th dose independent rect. 23 9
161 97.07 atmosphere 995.0 720 > th dose independent rect. 23 9
162 97.07 temperature 10.0 720 > th dose independent rect. 8 15
180 97.21 temperature 10.0 720 > th dose independent rect. 11 9
181 97.21 atmosphere 1015.0 720 < th dose independent rect. 11 9
182 97.21 temperature 10.0 720 > th dose independent rect. 20 15
183 97.21 atmosphere 995.0 720 > th dose independent rect. 20 15
187 97.24 wind 9.0 270 < th dose independent rect. 13 13
194 97.29 wind 9.0 270 < th dose independent rect. 21 11
196 97.30 humidity 90.0 270 < th dose independent rect. 13 2
197 97.30 wind 5.0 10 > th dose independent rect. 14 3
199 97.30 precipitation 0.1 720 < th dose independent rect. 5 12
201 97.30 precipitation 0.1 720 < th dose dependent rect. 5 12
204 97.32 temperature 10.0 270 > th dose independent rect. 21 11
205 97.32 temperature 30.0 270 < th dose independent rect. 21 11
206 97.32 humidity 50.0 270 > th dose independent rect. 21 11
208 97.32 atmosphere 995.0 270 > th dose independent rect. 21 11
209 97.32 temperature 10.0 270 > th dose independent rect. 8 13
212 97.32 radiation 10.0 10 < th dose dependent rect. 10 7
215 97.33 radiation 30.0 720 < th dose dependent rect. 17 12
218 97.35 radiation 40.0 270 < th dose independent rect. 21 11
220 97.36 wind 9.0 720 < th dose independent rect. 20 21
221 97.43 humidity 90.0 270 < th dose independent rect. 12 5
226 97.47 radiation 40.0 270 < th dose independent rect. 14 1
230 97.49 atmosphere 1005.0 10 > th dose independent rect. 14 5
239 97.56 humidity 50.0 720 > th dose independent rect. 17 12
246 97.59 precipitation 0.1 720 < th dose independent rect. 4 14
248 97.59 precipitation 0.1 720 < th dose dependent rect. 4 14
249 97.60 atmosphere 1015.0 270 < th dose independent rect. 8 13
251 97.61 precipitation 0.1 720 < th dose independent rect. 5 3
252 97.61 precipitation 0.1 720 < th dose dependent rect. 5 3
253 97.61 wind 1.0 10 > th dose dependent rect. 14 5
255 97.62 radiation 10.0 720 < th dose independent rect. 17 12
259 97.63 temperature 10.0 270 > th dose independent rect. 2 11
260 97.63 atmosphere 995.0 270 > th dose independent rect. 2 11
261 97.63 atmosphere 1015.0 270 < th dose independent rect. 2 11
262 97.63 temperature 10.0 270 > th dose independent rect. 13 13
277 97.68 temperature 10.0 720 > th dose independent rect. 17 12
278 97.68 atmosphere 1015.0 720 < th dose independent rect. 5 12
279 97.68 radiation 30.0 720 < th dose independent rect. 17 12
290 97.74 radiation 10.0 10 < th dose independent rect. 23 20
291 97.74 precipitation 0.1 720 < th dose independent rect. 20 21
292 97.74 radiation 40.0 90 < th dose dependent rect. 15 2
293 97.74 precipitation 0.1 720 < th dose dependent rect. 20 21
304 97.77 precipitation 0.1 90 < th dose independent rect. 14 4
305 97.77 precipitation 0.1 90 < th dose dependent rect. 14 4
314 97.82 radiation 40.0 720 < th dose independent rect. 5 3
315 97.82 wind 9.0 270 < th dose independent rect. 12 5
322 97.85 wind 3.0 10 > th dose dependent rect. 16 3
323 97.86 atmosphere 995.0 10 > th dose independent rect. 14 5
330 97.89 radiation 40.0 720 < th dose dependent rect. 17 3
331 97.90 wind 5.0 720 < th dose independent rect. 5 3
333 97.91 wind 9.0 270 < th dose independent rect. 13 3
339 97.93 temperature 30.0 720 < th dose independent rect. 5 3
340 97.93 humidity 50.0 720 > th dose independent rect. 5 3
342 97.93 atmosphere 995.0 720 > th dose independent rect. 5 3
343 97.93 atmosphere 1015.0 720 < th dose independent rect. 5 3
345 97.93 temperature 10.0 720 > th dose independent rect. 8 21
350 97.94 precipitation 0.1 270 < th dose independent rect. 2 11
352 97.94 precipitation 0.1 270 < th dose dependent rect. 2 11
364 97.99 wind 9.0 720 < th dose independent rect. 17 12
380 98.06 wind 9.0 720 < th dose independent rect. 5 20
385 98.09 humidity 90.0 10 < th dose independent rect. 16 1
387 98.10 humidity 50.0 720 > th dose independent rect. 20 15
388 98.11 temperature 10.0 720 > th dose independent rect. 17 3
389 98.11 atmosphere 1015.0 720 < th dose independent rect. 17 3
390 98.11 radiation 30.0 720 < th dose independent rect. 17 3
394 98.11 temperature 10.0 720 > th dose independent rect. 20 21
397 98.12 atmosphere 995.0 10 > th dose independent rect. 16 1
410 98.16 radiation 10.0 720 < th dose independent rect. 1 4
417 98.18 radiation 10.0 720 < th dose dependent rect. 1 4
424 98.21 humidity 50.0 720 > th dose independent rect. 17 3
426 98.22 wind 9.0 10 < th dose independent rect. 16 1
427 98.22 temperature 10.0 10 > th dose independent rect. 16 1
429 98.22 atmosphere 1010.0 10 < th dose independent rect. 16 1
431 98.22 radiation 40.0 10 < th dose independent rect. 16 1
432 98.22 precipitation 0.1 10 < th dose independent rect. 16 1
434 98.22 temperature 10.0 10 > th dose independent rect. 17 23
435 98.22 precipitation 0.1 10 < th dose dependent rect. 16 1
437 98.23 temperature 10.0 270 > th dose independent rect. 13 3
439 98.23 atmosphere 1010.0 270 < th dose independent rect. 13 3
441 98.23 temperature 10.0 270 > th dose independent rect. 16 21
455 98.27 precipitation 0.1 10 < th dose independent rect. 17 23
456 98.27 precipitation 0.1 10 < th dose dependent rect. 17 23
462 98.28 radiation 1.0 90 < th dose dependent sin 15 NA
464 98.29 wind 9.0 720 < th dose independent rect. 17 3
468 98.29 atmosphere 995.0 270 > th dose independent rect. 17 19
475 98.30 radiation 40.0 10 < th dose independent rect. 13 6
484 98.34 atmosphere 995.0 270 > th dose independent rect. 16 21
493 98.36 radiation 20.0 10 < th dose dependent rect. 20 23
517 98.41 wind 1.0 270 > th dose independent rect. 17 12
526 98.44 wind 9.0 720 < th dose independent rect. 1 4
527 98.44 temperature 10.0 720 > th dose independent rect. 1 4
528 98.44 temperature 30.0 720 < th dose independent rect. 1 4
529 98.44 humidity 50.0 720 > th dose independent rect. 1 4
532 98.44 atmosphere 995.0 720 > th dose independent rect. 1 4
538 98.44 humidity 50.0 270 > th dose independent rect. 2 11
539 98.44 temperature 10.0 720 > th dose independent rect. 5 20
544 98.47 wind 9.0 10 < th dose independent rect. 14 5
552 98.47 radiation 1.0 270 > th dose dependent rect. 12 20
554 98.48 atmosphere 995.0 10 > th dose independent rect. 17 23
564 98.51 wind 1.0 720 > th dose independent rect. 17 3
573 98.52 wind 3.0 10 > th dose dependent rect. 14 3
597 98.61 radiation 40.0 90 < th dose dependent rect. 13 4
603 98.64 humidity 50.0 270 > th dose independent rect. 17 19
604 98.64 atmosphere 1015.0 10 < th dose dependent rect. 16 1
609 98.65 wind 9.0 270 < th dose independent rect. 1 11
611 98.66 wind 9.0 720 < th dose dependent rect. 5 3
612 98.66 humidity 50.0 90 > th dose dependent rect. 13 4
619 98.69 precipitation 0.1 1440 < th dose independent rect. 17 1
623 98.69 precipitation 0.1 1440 < th dose dependent rect. 17 1
642 98.75 atmosphere 995.0 720 > th dose independent rect. 17 12
643 98.75 wind 9.0 270 < th dose independent rect. 20 23
650 98.78 temperature 10.0 10 > th dose independent rect. 14 5
652 98.78 atmosphere 1010.0 10 < th dose independent rect. 14 5
654 98.78 temperature 10.0 10 > th dose independent rect. 19 19
655 98.78 atmosphere 995.0 10 > th dose independent rect. 19 19
657 98.79 radiation 40.0 720 < th dose independent rect. 14 18
700 98.88 temperature 10.0 10 > th dose dependent rect. 16 1
705 98.89 precipitation 0.1 720 < th dose independent rect. 20 14
706 98.89 precipitation 0.1 720 < th dose dependent rect. 20 14
746 98.96 atmosphere 995.0 720 > th dose independent rect. 17 3
753 98.97 radiation 10.0 270 > th dose independent rect. 12 20
758 98.99 radiation 1.0 90 < th dose independent sin 15 NA
777 99.04 wind 9.0 270 < th dose independent rect. 17 19
778 99.04 precipitation 0.1 270 < th dose independent rect. 17 19
781 99.04 precipitation 0.1 270 < th dose dependent rect. 17 19
805 99.09 precipitation 0.1 720 < th dose independent rect. 5 20
807 99.09 precipitation 0.1 720 < th dose dependent rect. 5 20
813 99.11 humidity 90.0 10 < th dose independent rect. 14 5
815 99.12 wind 1.0 270 > th dose independent rect. 17 19
831 99.18 humidity 50.0 10 > th dose dependent rect. 13 6
836 99.20 humidity 60.0 270 > th dose independent rect. 23 18
838 99.20 radiation 20.0 30 < th dose dependent rect. 19 12
871 99.29 precipitation 0.1 10 < th dose independent rect. 19 19
873 99.29 precipitation 0.1 10 < th dose dependent rect. 19 19
876 99.30 wind 9.0 270 < th dose independent rect. 8 13
911 99.36 humidity 90.0 10 < th dose dependent rect. 16 1
921 99.39 temperature 10.0 720 > th dose independent rect. 14 10
923 99.39 temperature 10.0 720 > th dose independent rect. 24 14
924 99.39 atmosphere 995.0 720 > th dose independent rect. 24 14
929 99.39 radiation 1.0 90 < th dose dependent rect. 17 7
938 99.42 radiation 1.0 90 < th dose independent rect. 17 12
943 99.43 precipitation 0.1 270 < th dose independent rect. 16 21
947 99.43 precipitation 0.1 270 < th dose dependent rect. 16 21
962 99.46 temperature 30.0 270 < th dose dependent rect. 23 9
967 99.48 radiation 20.0 90 > th dose independent rect. 16 15
968 99.48 wind 9.0 30 < th dose independent rect. 19 19
969 99.48 wind 9.0 270 < th dose independent rect. 16 21
972 99.49 radiation 10.0 10 < th dose independent rect. 19 12
974 99.50 radiation 20.0 90 > th dose independent rect. 16 1
988 99.50 wind 1.0 30 > th dose independent rect. 5 14