FiT-DB / Search/ Help/ Sample detail

Os10g0406300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AOBP (Ascorbate oxidase promoter-binding protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0324) R2 : 0.817
β1 : 0.797 (0.119) R2dD : 0.0187 R2D : 0.0126
β2 : 2.77 (0.0964) R2dC : 0.505 R2C : -0.421
β3 : -5.22 (0.117) R2dE : 1.23 R2E : 0.288
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.132 (0.0693) R2dN8 : 0.00193 R2N8 : -0.00573
σ : 0.605
deviance : 168.83
__
_____
C
peak time of C : 1.67
E
wheather : temperature
threshold : 13.49
memory length : 109
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.7
open length of G : 6.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.87 0.616 12.2 0.802 2.66 -5.06 1.07 -0.964 0.0936 1.92 14.36 91 18.9 6.87
169.69 0.607 12.2 0.846 2.8 -5.26 0.742 -- 0.0998 1.66 13.77 97 18.8 6.87
170.07 0.607 12.2 0.772 2.76 -5.18 -- 0.238 0.167 1.75 13.85 106 18.8 6.8
168.83 0.605 12.2 0.797 2.77 -5.22 -- -- 0.132 1.67 13.49 109 18.7 6.88
401.86 0.934 12.2 0.911 -- -3.87 -- 0.34 0.169 -- 17.5 86 18.8 5.99
613.45 1.16 12.2 0.571 2.37 -- 0.744 -- -0.147 7.04 -- -- -- --
614.9 1.16 12.2 0.585 2.37 -- -- -- -0.149 7.03 -- -- -- --
401.18 0.933 12.2 0.903 -- -3.89 -- -- 0.168 -- 17.47 87 18.8 5.9
184.85 0.633 12.2 -- 2.83 -5.21 -- -- 0.0316 1.65 12.93 114 18.7 6.85
911.26 1.41 12.2 0.633 -- -- -- -- -0.106 -- -- -- -- --
623.94 1.17 12.2 -- 2.38 -- -- -- -0.214 7.02 -- -- -- --
422 0.957 12.2 -- -- -3.87 -- -- 0.0522 -- 17.41 88 18.8 5.86
921.82 1.42 12.2 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.18 temperature 15.0 90 > th dose dependent rect. 19 7
17 229.20 temperature 20.0 90 > th dose independent rect. 19 6
21 236.70 temperature 20.0 270 > th dose independent rect. 17 7
27 242.89 temperature 15.0 270 > th dose dependent rect. 19 3
71 290.86 atmosphere 1010.0 90 < th dose independent rect. 19 6
106 316.72 wind 9.0 270 < th dose independent rect. 13 15
109 317.55 temperature 10.0 270 > th dose independent rect. 4 9
110 317.55 atmosphere 995.0 270 > th dose independent rect. 4 9
111 317.55 atmosphere 1015.0 270 < th dose independent rect. 4 9
112 317.55 temperature 10.0 270 > th dose independent rect. 13 15
115 318.93 precipitation 0.1 270 < th dose independent rect. 4 9
116 318.93 precipitation 0.1 270 < th dose dependent rect. 4 9
117 319.02 precipitation 0.1 90 < th dose independent rect. 1 18
118 319.02 precipitation 0.1 90 < th dose dependent rect. 1 18
119 319.65 wind 1.0 270 > th dose independent rect. 18 5
120 319.67 humidity 50.0 270 > th dose independent rect. 17 6
124 320.00 wind 9.0 270 < th dose independent rect. 4 9
126 320.17 radiation 10.0 270 < th dose independent rect. 17 6
129 320.43 radiation 20.0 270 < th dose dependent rect. 17 6
137 321.32 precipitation 0.1 270 < th dose independent rect. 23 18
138 321.32 precipitation 0.1 270 < th dose dependent rect. 23 18
145 322.75 precipitation 0.1 270 < th dose independent rect. 13 15
146 322.75 precipitation 0.1 270 < th dose dependent rect. 13 15
150 323.91 precipitation 0.1 10 < th dose independent rect. 19 7
151 323.91 precipitation 0.1 10 < th dose dependent rect. 19 7
153 324.19 atmosphere 1015.0 90 < th dose independent rect. 19 19
158 324.50 radiation 1.0 90 < th dose dependent rect. 19 6
160 324.52 temperature 30.0 90 < th dose independent rect. 19 6
161 324.52 humidity 50.0 90 > th dose independent rect. 19 6
163 324.52 atmosphere 995.0 90 > th dose independent rect. 19 6
164 324.52 radiation 1.0 90 < th dose independent rect. 19 6
169 324.52 temperature 10.0 90 > th dose independent rect. 1 18
170 324.52 atmosphere 1015.0 90 < th dose independent rect. 1 18
178 324.95 wind 9.0 270 < th dose independent rect. 23 18
179 325.27 wind 9.0 90 < th dose independent rect. 19 6
181 325.36 atmosphere 1015.0 270 < th dose independent rect. 17 20
188 325.57 temperature 10.0 270 > th dose independent rect. 23 18
189 325.65 wind 9.0 90 < th dose independent rect. 1 18
190 325.80 temperature 10.0 90 > th dose dependent rect. 19 18
200 327.05 atmosphere 1015.0 270 < th dose independent rect. 18 17
201 327.12 wind 9.0 270 < th dose independent rect. 17 6
206 328.42 precipitation 0.1 270 < th dose independent rect. 17 6
207 328.42 precipitation 0.1 270 < th dose dependent rect. 17 6
208 328.48 wind 9.0 10 < th dose independent rect. 2 17
210 328.60 humidity 50.0 270 > th dose independent rect. 4 9
234 329.12 precipitation 0.1 90 < th dose independent rect. 19 6
235 329.12 precipitation 0.1 90 < th dose dependent rect. 19 6
281 330.85 precipitation 0.1 270 < th dose independent rect. 13 4
282 330.85 precipitation 0.1 270 < th dose dependent rect. 13 4
297 331.27 wind 1.0 270 > th dose independent rect. 13 4
313 332.15 wind 9.0 270 < th dose independent rect. 13 4
314 332.16 humidity 50.0 270 > th dose independent rect. 17 20
330 332.82 temperature 10.0 270 > th dose independent rect. 13 4
332 332.82 atmosphere 1010.0 270 < th dose independent rect. 13 4
334 332.82 temperature 10.0 270 > th dose independent rect. 17 20
342 333.56 atmosphere 995.0 270 > th dose independent rect. 23 18
350 334.46 wind 1.0 270 > th dose independent rect. 11 7
361 335.34 wind 9.0 270 < th dose independent rect. 17 20
367 335.61 precipitation 0.1 270 < th dose independent rect. 11 7
368 335.61 precipitation 0.1 270 < th dose dependent rect. 11 7
370 335.77 atmosphere 1010.0 270 < th dose independent rect. 19 2
375 336.16 temperature 15.0 30 > th dose independent rect. 19 19
395 336.31 humidity 50.0 270 > th dose independent rect. 18 17
416 337.41 atmosphere 995.0 90 > th dose independent rect. 19 19
417 337.47 wind 9.0 270 < th dose independent rect. 11 7
425 337.80 atmosphere 995.0 270 > th dose independent rect. 13 4
427 337.84 temperature 15.0 270 > th dose independent rect. 18 17
432 338.26 temperature 10.0 270 > th dose independent rect. 11 7
433 338.26 atmosphere 1015.0 270 < th dose independent rect. 11 7
461 338.90 wind 9.0 90 < th dose independent rect. 19 19
464 339.06 radiation 40.0 90 < th dose independent rect. 14 5
467 339.19 wind 9.0 270 < th dose independent rect. 18 17
497 340.23 wind 1.0 270 > th dose independent rect. 14 2
532 342.49 atmosphere 995.0 270 > th dose independent rect. 18 17
533 342.62 wind 9.0 270 < th dose independent rect. 14 2
537 342.87 precipitation 0.1 270 < th dose independent rect. 14 2
538 342.87 precipitation 0.1 270 < th dose dependent rect. 14 2
544 343.17 temperature 10.0 270 > th dose independent rect. 14 2
546 343.17 atmosphere 1010.0 270 < th dose independent rect. 14 2
548 343.17 temperature 10.0 270 > th dose independent rect. 16 22
549 343.18 atmosphere 995.0 270 > th dose independent rect. 13 15
557 343.70 precipitation 0.1 270 < th dose independent rect. 17 20
558 343.70 precipitation 0.1 270 < th dose dependent rect. 17 20
564 343.92 precipitation 0.1 90 < th dose independent rect. 19 19
565 343.92 precipitation 0.1 90 < th dose dependent rect. 19 19
605 344.73 radiation 1.0 270 > th dose independent rect. 13 4
614 345.35 atmosphere 1015.0 90 < th dose dependent rect. 19 6
647 346.27 atmosphere 995.0 270 > th dose independent rect. 17 20
677 347.68 precipitation 0.1 270 < th dose independent rect. 18 17
678 347.68 precipitation 0.1 270 < th dose dependent rect. 18 17
687 348.11 radiation 1.0 90 < th dose dependent rect. 7 18
710 349.36 radiation 1.0 90 < th dose dependent rect. 9 16
717 349.58 atmosphere 995.0 270 > th dose independent rect. 11 7
725 350.05 radiation 1.0 90 < th dose dependent sin 16 NA
735 350.34 wind 9.0 270 < th dose independent rect. 16 22
745 350.75 atmosphere 995.0 270 > th dose independent rect. 14 2
750 350.93 radiation 1.0 270 > th dose independent rect. 14 2
772 351.85 atmosphere 1015.0 270 < th dose independent rect. 6 17
860 354.38 radiation 1.0 1440 < th dose dependent rect. 20 7
874 355.05 temperature 10.0 90 > th dose dependent rect. 14 5
880 355.16 temperature 10.0 270 > th dose dependent rect. 14 2
905 356.30 atmosphere 995.0 270 > th dose dependent rect. 13 4
907 356.51 atmosphere 995.0 270 > th dose dependent rect. 14 2
923 356.90 wind 9.0 10 < th dose dependent rect. 19 7
958 358.00 temperature 10.0 1440 > th dose independent rect. 15 5
961 358.00 temperature 10.0 1440 > th dose independent rect. 20 19
964 358.04 radiation 1.0 270 < th dose independent rect. 7 16
965 358.05 temperature 10.0 1440 > th dose independent rect. 20 7
968 358.05 temperature 30.0 1440 < th dose independent rect. 20 7
972 358.05 humidity 50.0 1440 > th dose independent rect. 20 7
978 358.05 atmosphere 995.0 1440 > th dose independent rect. 20 7
979 358.05 radiation 1.0 1440 < th dose independent rect. 20 7
999 358.05 temperature 10.0 1440 > th dose independent rect. 3 17