Os04g0678400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, Dof-type family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0678400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, Dof-type family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.41 | 0.678 | 7.52 | 1.75 | 1.12 | -3.09 | 0.697 | -6.18 | 0.631 | 11.7 | 6.448 | 555 | -- | -- |
| 215.57 | 0.684 | 7.46 | 1.65 | 1.09 | -1.88 | 0.384 | -- | 0.663 | 11.7 | 6.4 | 588 | -- | -- |
| 210.48 | 0.676 | 7.51 | 1.77 | 1.1 | -3.03 | -- | -5.67 | 0.641 | 11.7 | 6.4 | 546 | -- | -- |
| 216.03 | 0.685 | 7.46 | 1.66 | 1.1 | -1.77 | -- | -- | 0.654 | 11.7 | 6.1 | 588 | -- | -- |
| 269.04 | 0.764 | 7.54 | 1.77 | -- | -2.64 | -- | -5.36 | 0.616 | -- | 6.435 | 277 | -- | -- |
| 239.21 | 0.725 | 7.48 | 1.32 | 0.936 | -- | 0.579 | -- | 0.596 | 12.5 | -- | -- | -- | -- |
| 240.62 | 0.726 | 7.48 | 1.35 | 0.935 | -- | -- | -- | 0.599 | 12.6 | -- | -- | -- | -- |
| 271.5 | 0.767 | 7.49 | 1.63 | -- | -1.05 | -- | -- | 0.645 | -- | 5.601 | 161 | -- | -- |
| 280.93 | 0.781 | 7.5 | -- | 0.933 | -1.32 | -- | -- | 0.499 | 12.4 | 8.7 | 588 | -- | -- |
| 295.39 | 0.803 | 7.5 | 1.31 | -- | -- | -- | -- | 0.583 | -- | -- | -- | -- | -- |
| 288.35 | 0.794 | 7.52 | -- | 0.915 | -- | -- | -- | 0.449 | 12.6 | -- | -- | -- | -- |
| 331.68 | 0.848 | 7.53 | -- | -- | -0.638 | -- | -- | 0.444 | -- | 5.597 | 158 | -- | -- |
| 340.84 | 0.862 | 7.53 | -- | -- | -- | -- | -- | 0.437 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.05 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 23 |
| 2 | 204.81 | wind | 5.0 | 270 | < th | dose independent | rect. | 10 | 18 |
| 3 | 205.28 | wind | 5.0 | 270 | < th | dose independent | rect. | 9 | 20 |
| 7 | 207.80 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 6 | 14 |
| 13 | 208.63 | wind | 7.0 | 720 | < th | dose independent | rect. | 2 | 19 |
| 15 | 208.66 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 21 |
| 18 | 208.75 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 11 |
| 20 | 208.88 | wind | 5.0 | 30 | < th | dose independent | rect. | 12 | 18 |
| 26 | 209.48 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 10 | 20 |
| 32 | 209.82 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 20 | 10 |
| 40 | 210.11 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 43 | 210.24 | wind | 5.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 54 | 210.50 | wind | 7.0 | 720 | < th | dose independent | rect. | 2 | 17 |
| 55 | 210.58 | humidity | 80.0 | 30 | > th | dose independent | rect. | 11 | 19 |
| 71 | 211.01 | wind | 9.0 | 720 | < th | dose independent | rect. | 10 | 9 |
| 74 | 211.08 | wind | 7.0 | 720 | < th | dose independent | rect. | 9 | 13 |
| 81 | 211.22 | wind | 9.0 | 720 | < th | dose independent | rect. | 7 | 15 |
| 90 | 211.46 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 92 | 211.47 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 20 | 21 |
| 101 | 211.60 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 108 | 211.70 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 10 |
| 109 | 211.71 | wind | 5.0 | 270 | > th | dose dependent | rect. | 15 | 19 |
| 118 | 211.85 | wind | 7.0 | 720 | < th | dose independent | rect. | 10 | 11 |
| 123 | 211.99 | wind | 7.0 | 720 | < th | dose independent | rect. | 1 | 14 |
| 126 | 212.02 | wind | 5.0 | 720 | > th | dose dependent | rect. | 6 | 20 |
| 134 | 212.08 | wind | 5.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 165 | 212.26 | wind | 5.0 | 720 | > th | dose dependent | rect. | 4 | 13 |
| 172 | 212.31 | wind | 5.0 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 174 | 212.32 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 179 | 212.35 | wind | 5.0 | 720 | > th | dose dependent | no | NA | NA |
| 181 | 212.35 | wind | 5.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 198 | 212.49 | wind | 7.0 | 720 | < th | dose independent | rect. | 23 | 15 |
| 205 | 212.55 | wind | 7.0 | 270 | > th | dose independent | rect. | 15 | 20 |
| 220 | 212.62 | wind | 5.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 253 | 212.86 | wind | 7.0 | 30 | < th | dose dependent | rect. | 12 | 18 |
| 256 | 212.90 | wind | 9.0 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 269 | 212.97 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 21 |
| 278 | 213.02 | wind | 7.0 | 720 | < th | dose independent | rect. | 7 | 7 |
| 305 | 213.18 | temperature | 20.0 | 30 | > th | dose independent | rect. | 6 | 14 |
| 321 | 213.31 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 20 | 20 |
| 327 | 213.39 | wind | 7.0 | 720 | > th | dose independent | rect. | 15 | 22 |
| 354 | 213.61 | radiation | 10.0 | 30 | < th | dose dependent | sin | 7 | NA |
| 356 | 213.66 | radiation | 10.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 364 | 213.73 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 370 | 213.79 | humidity | 80.0 | 10 | > th | dose independent | rect. | 8 | 22 |
| 373 | 213.82 | wind | 7.0 | 720 | > th | dose independent | rect. | 19 | 21 |
| 377 | 213.85 | wind | 7.0 | 720 | < th | dose independent | rect. | 9 | 5 |
| 399 | 214.04 | wind | 5.0 | 270 | > th | dose dependent | rect. | 15 | 9 |
| 403 | 214.06 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 405 | 214.09 | humidity | 80.0 | 10 | > th | dose dependent | no | NA | NA |
| 417 | 214.18 | radiation | 1.0 | 90 | < th | dose independent | sin | 8 | NA |
| 423 | 214.24 | wind | 5.0 | 270 | > th | dose dependent | rect. | 15 | 11 |
| 424 | 214.24 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 427 | 214.27 | wind | 7.0 | 720 | < th | dose independent | no | NA | NA |
| 430 | 214.28 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 436 | 214.35 | wind | 9.0 | 30 | < th | dose dependent | rect. | 10 | 20 |
| 441 | 214.38 | radiation | 1.0 | 90 | > th | dose independent | sin | 7 | NA |
| 481 | 214.63 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 21 |
| 492 | 214.68 | wind | 5.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 535 | 214.93 | wind | 7.0 | 720 | < th | dose independent | sin | 5 | NA |
| 551 | 214.99 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 18 |
| 552 | 215.00 | wind | 7.0 | 720 | > th | dose independent | rect. | 22 | 23 |
| 556 | 215.02 | wind | 7.0 | 720 | > th | dose independent | rect. | 4 | 22 |
| 560 | 215.05 | wind | 7.0 | 720 | > th | dose independent | sin | 5 | NA |
| 565 | 215.06 | wind | 7.0 | 720 | > th | dose independent | rect. | 7 | 19 |
| 572 | 215.07 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 589 | 215.11 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 598 | 215.15 | wind | 7.0 | 720 | > th | dose independent | no | NA | NA |
| 610 | 215.17 | wind | 7.0 | 720 | > th | dose independent | rect. | 24 | 23 |
| 624 | 215.22 | wind | 7.0 | 270 | < th | dose independent | sin | 15 | NA |
| 631 | 215.25 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 15 | 11 |
| 635 | 215.27 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 641 | 215.31 | wind | 7.0 | 270 | > th | dose independent | rect. | 11 | 23 |
| 642 | 215.31 | wind | 7.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 665 | 215.38 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 10 |
| 725 | 215.54 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 14 |
| 726 | 215.54 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 14 |
| 769 | 215.70 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 824 | 215.89 | wind | 5.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 838 | 215.92 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 23 |
| 860 | 215.99 | wind | 7.0 | 270 | > th | dose independent | sin | 15 | NA |
| 862 | 215.99 | humidity | 70.0 | 10 | > th | dose dependent | sin | 9 | NA |
| 878 | 216.08 | wind | 7.0 | 270 | > th | dose independent | rect. | 15 | 11 |
| 895 | 216.15 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 896 | 216.15 | wind | 7.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 897 | 216.15 | wind | 7.0 | 720 | < th | dose independent | rect. | 2 | 11 |
| 900 | 216.15 | wind | 1.0 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 901 | 216.16 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 6 |
| 913 | 216.20 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 990 | 216.39 | wind | 7.0 | 1440 | > th | dose independent | rect. | 8 | 6 |