Os01g0865800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AOBP (Ascorbate oxidase promoter-binding protein).
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Os01g0865800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AOBP (Ascorbate oxidase promoter-binding protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.99 | 0.431 | 2.95 | -0.669 | 0.056 | -1.76 | 0.145 | 8.89 | 0.00261 | 8.22 | 999.6 | 256 | -- | -- |
| 85.06 | 0.433 | 2.86 | -0.14 | 0.0319 | -0.149 | 0.271 | -- | 0.00226 | 6.02 | 999.6 | 256 | -- | -- |
| 84.01 | 0.427 | 2.95 | -0.638 | 0.0572 | -1.73 | -- | 8.71 | 0.00236 | 9.96 | 999.6 | 245 | -- | -- |
| 85.06 | 0.43 | 2.86 | -0.155 | 0.0297 | -0.164 | -- | -- | -0.00456 | 9.15 | 999.6 | 255 | -- | -- |
| 84.21 | 0.427 | 2.95 | -0.656 | -- | -1.78 | -- | 9.02 | 0.00284 | -- | 999.5 | 245 | -- | -- |
| 85.65 | 0.434 | 2.86 | -0.115 | 0.0379 | -- | 0.247 | -- | -0.00771 | 6.53 | -- | -- | -- | -- |
| 85.7 | 0.434 | 2.86 | -0.11 | 0.0551 | -- | -- | -- | -0.00776 | 9.65 | -- | -- | -- | -- |
| 85.19 | 0.43 | 2.86 | -0.141 | -- | -0.175 | -- | -- | 0.00131 | -- | 999.6 | 241 | -- | -- |
| 85.5 | 0.431 | 2.86 | -- | 0.0567 | -0.15 | -- | -- | 0.0149 | 9.26 | 999.6 | 255 | -- | -- |
| 85.88 | 0.433 | 2.86 | -0.111 | -- | -- | -- | -- | -0.00766 | -- | -- | -- | -- | -- |
| 86.02 | 0.434 | 2.86 | -- | 0.0553 | -- | -- | -- | 0.00453 | 9.8 | -- | -- | -- | -- |
| 85.68 | 0.431 | 2.86 | -- | -- | -0.151 | -- | -- | 0.0158 | -- | 999.6 | 243 | -- | -- |
| 86.2 | 0.433 | 2.86 | -- | -- | -- | -- | -- | 0.00463 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.37 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 17 | 1 |
| 20 | 71.37 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 49 | 74.07 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 53 | 74.07 | wind | 5.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 79 | 74.36 | humidity | 90.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 81 | 74.36 | wind | 9.0 | 90 | > th | dose dependent | rect. | 22 | 12 |
| 92 | 74.58 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 212 | 79.44 | temperature | 30.0 | 90 | > th | dose independent | rect. | 16 | 1 |
| 221 | 79.76 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 229 | 79.76 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 253 | 79.89 | humidity | 90.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 254 | 79.91 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 360 | 81.07 | wind | 7.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 407 | 81.43 | temperature | 25.0 | 90 | > th | dose independent | rect. | 9 | 1 |
| 408 | 81.43 | wind | 3.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 428 | 81.52 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 16 | 5 |
| 454 | 81.68 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 12 | 9 |
| 555 | 81.98 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 585 | 82.04 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 666 | 82.29 | wind | 7.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 671 | 82.32 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 673 | 82.33 | radiation | 20.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 690 | 82.40 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 693 | 82.40 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 699 | 82.42 | wind | 3.0 | 10 | < th | dose independent | rect. | 19 | 2 |
| 701 | 82.42 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 6 | 13 |
| 706 | 82.44 | radiation | 30.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 717 | 82.46 | humidity | 60.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 726 | 82.47 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 727 | 82.48 | wind | 1.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 728 | 82.48 | temperature | 10.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 731 | 82.48 | humidity | 90.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 732 | 82.48 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 735 | 82.48 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 10 | 1 |
| 742 | 82.48 | temperature | 10.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 743 | 82.48 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 745 | 82.49 | wind | 9.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 747 | 82.50 | temperature | 30.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 767 | 82.55 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 777 | 82.57 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 786 | 82.59 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 790 | 82.60 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 807 | 82.64 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 817 | 82.65 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 9 | 12 |
| 818 | 82.66 | wind | 1.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 819 | 82.66 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 823 | 82.66 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 827 | 82.66 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 830 | 82.66 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 832 | 82.66 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 835 | 82.66 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 836 | 82.66 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 887 | 82.73 | wind | 9.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 897 | 82.74 | wind | 5.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 955 | 82.81 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 956 | 82.81 | wind | 5.0 | 720 | < th | dose independent | rect. | 1 | 7 |
| 969 | 82.83 | atmosphere | 1000.0 | 270 | < th | dose independent | sin | 21 | NA |
| 986 | 82.85 | atmosphere | 1000.0 | 270 | > th | dose independent | sin | 21 | NA |
| 998 | 82.86 | wind | 7.0 | 720 | > th | dose independent | rect. | 22 | 11 |