Os03g0821200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Zn finger protein (Fragment).
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Os03g0821200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zn finger protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.16 | 0.336 | 9.94 | 1.86 | 0.723 | -1.62 | 0.672 | 1.74 | 0.225 | 4.83 | 15.11 | 259 | -- | -- |
| 53.32 | 0.34 | 9.97 | 1.58 | 0.765 | -1.43 | 0.195 | -- | 0.153 | 4.79 | 15.95 | 249 | -- | -- |
| 52.01 | 0.336 | 9.96 | 1.78 | 0.724 | -1.69 | -- | 1.23 | 0.202 | 4.97 | 14.5 | 249 | -- | -- |
| 52.81 | 0.338 | 9.98 | 1.59 | 0.719 | -1.69 | -- | -- | 0.153 | 5.22 | 13.41 | 204 | -- | -- |
| 70.71 | 0.392 | 9.93 | 1.97 | -- | -1.97 | -- | 1.45 | 0.331 | -- | 19.26 | 250 | -- | -- |
| 81.1 | 0.422 | 10 | 1.24 | 1.19 | -- | 0.566 | -- | -0.0807 | 4.77 | -- | -- | -- | -- |
| 81.94 | 0.424 | 10 | 1.24 | 1.19 | -- | -- | -- | -0.0835 | 4.79 | -- | -- | -- | -- |
| 71.79 | 0.395 | 9.96 | 1.76 | -- | -2.39 | -- | -- | 0.269 | -- | 14.34 | 244 | -- | -- |
| 112.75 | 0.495 | 10 | -- | 0.963 | -0.915 | -- | -- | -0.115 | 4.97 | 9.106 | 182 | -- | -- |
| 156.91 | 0.585 | 10 | 1.28 | -- | -- | -- | -- | -0.0526 | -- | -- | -- | -- | -- |
| 122.17 | 0.517 | 10.1 | -- | 1.21 | -- | -- | -- | -0.221 | 4.76 | -- | -- | -- | -- |
| 138.38 | 0.548 | 10 | -- | -- | -1.47 | -- | -- | -0.0924 | -- | 24.5 | 250 | -- | -- |
| 200.14 | 0.66 | 10.1 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 3 | 50.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 14 | 51.17 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 18 | 51.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 25 | 51.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 26 | 51.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 38 | 51.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 39 | 51.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 41 | 51.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 70 | 52.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 109 | 52.52 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 117 | 52.60 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 127 | 52.65 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 143 | 52.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 151 | 52.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 10 |
| 161 | 52.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 162 | 52.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 169 | 52.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 184 | 52.99 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 210 | 53.08 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 218 | 53.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 231 | 53.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 291 | 53.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 305 | 53.29 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 311 | 53.30 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 333 | 53.33 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 366 | 53.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 371 | 53.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 14 |
| 426 | 53.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 501 | 53.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 515 | 53.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 521 | 53.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 522 | 53.53 | temperature | 30 | 1440 | < th | dose dependent | sin | 5 | NA |
| 584 | 53.60 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 588 | 53.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 697 | 53.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 699 | 53.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 710 | 53.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 819 | 53.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 944 | 53.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 957 | 53.88 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |